Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003402

Physical Location & Seq

Genomic Coordinates Reverse (-)

42715280 .. 42716088

Gene Structure 809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0279900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGAACCACGAACTCTGCAACTGATGGAGCTACAAACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAATGCCAACACAGATTTCTGGCGAAGCCGTGCCAGGTGGGTTCCTACTCCAGATCAAATAAGGATCCTCAAGGATCTTTACTACGACAAGGGAGTTAAGCGCCCAACTACAGAGCATATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGACATGTTGAGGGCAAGAACATTTATTTTTGGTTCCAGAATGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGGTGGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTAATCTCAACTTTGGTTCCACCGATTCTACTGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGATTGAAACTCTTCCATTGTTCCCCATGCATGGTGAGGACATCTTGGGCATCATGAAGACTACTTCCGAGGGAGGTAGCGGTTATGGCGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTCAACTCCTACAGAGATGCAGACATGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0008144 GO:0008150 GO:0008270 GO:0010035 GO:0010038 GO:0016020 GO:0019842 GO:0030170 GO:0031090 GO:0036094 GO:0042221 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048037 GO:0050662 GO:0050896 GO:0070279 GO:0097159 GO:0098588 GO:0098805 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00250 ko00260 ko00270 ko00280 ko01100 ko01110 map00250 map00260 map00270 map00280 map01100 map01110

Pfam Domains

Protein Families

Aminotran_3

Protein Analysis

239

Amino Acids

25.89

Weight (kDa)

5.19

Isoelectric Point (pI)

50.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	38 - 99	1.1e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39660 AT4G39660
fragaria_vesca	FvH4_1g21920
malus_domestica	MD15G1330500.v1.1
prunus_persica	Prupe.1G573800_v2.0.a1 Prupe.1G573800_v2.0.a1 Prupe.6G177100_v2.0.a1 Prupe.6G177100_v2.0.a1
pyrus_communis	pycom15g29470
rosa_chinensis	RchiOBHm_Chr2g0115931 RchiOBHm_Chr6g0298301
rosa_laevigata	RLG00000011518 RLG00000018224
rosa_multiflora	Rmu_sc0003420.1_g000003 Rmu_ssc0000197.1_g000006
rosa_roxburghii	Rroxscaffold_2G00127710 Rroxscaffold_2G00128500 Rroxscaffold_7G00169760
rosa_rugosa	Rorug02G0201300 Rorug06G0279900 Rorug06G0280000 Rorug06G0280100 Rorug06G0280200 Rorug06G0280300 Rorug06G0280300 Rorug06G0280400
rosa_samantha	Rh2AG258100 Rh2CG264700 Rh2DG266400 Rh6AG390800 Rh6BG399000 Rh6CG404900 Rh6DG391400
rosa_wichuraiana	Rw2G020240 Rw6G034120 Rw6G034160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	437
AciI	CCGC	2 cut(s)	648, 657
AfaI	GTAC	1 cut(s)	352
AfiI	CCNNNNNNNGG	3 cut(s)	353, 437, 599
AflIII	ACRYGT	1 cut(s)	238
AgsI	TTSAA	1 cut(s)	575
AhlI	ACTAGT	2 cut(s)	338, 467
AjnI	CCWGG	3 cut(s)	116, 346, 564
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AloI	GAACNNNNNNTCC	2 cut(s)	328, 360
AluBI	AGCT	4 cut(s)	31, 223, 434, 682
AluI	AGCT	4 cut(s)	31, 223, 434, 682
Alw21I	GWGCWC	1 cut(s)	684
Alw26I	GTCTC	1 cut(s)	221
Ama87I	CYCGRG	1 cut(s)	285
AoxI	GGCC	1 cut(s)	428
ApeKI	GCWGC	2 cut(s)	74, 317
ArsI	GACNNNNNNTTYG	4 cut(s)	407, 439, 440, 472
AseI	ATTAAT	1 cut(s)	495
Asp700I	GAANNNNTTC	2 cut(s)	340, 579
AspLEI	GCGC	1 cut(s)	186
AspS9I	GGNCC	3 cut(s)	381, 428, 462
AsuC2I	CCSGG	1 cut(s)	79
AsuHPI	GGTGA	2 cut(s)	554, 614
AvaI	CYCGRG	1 cut(s)	285
AvaII	GGWCC	2 cut(s)	381, 462
BaeGI	GKGCMC	1 cut(s)	330
BamHI	GGATCC	4 cut(s)	147, 359, 407, 440
BanII	GRGCYC	2 cut(s)	286, 684
BauI	CACGAG	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	632
Bbv12I	GWGCWC	1 cut(s)	684
BbvI	GCAGC	2 cut(s)	86, 304
BccI	CCATC	4 cut(s)	19, 50, 419, 476
BceAI	ACGGC	1 cut(s)	96
BciT130I	CCWGG	3 cut(s)	118, 348, 566
BcnI	CCSGG	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	221
BcuI	ACTAGT	2 cut(s)	338, 467
BfaI	CTAG	2 cut(s)	339, 468
BfmI	CTRYAG	2 cut(s)	192, 697
BfoI	RGCGCY	1 cut(s)	187
BglII	AGATCT	1 cut(s)	210
BisI	GCNGC	2 cut(s)	75, 318
BlpI	GCTNAGC	1 cut(s)	683
BlsI	GCNGC	2 cut(s)	76, 319
Bme1390I	CCNGG	4 cut(s)	79, 118, 348, 566
Bme18I	GGWCC	2 cut(s)	381, 462
BmeT110I	CYCGRG	1 cut(s)	285
BmgT120I	GGNCC	3 cut(s)	381, 428, 462
BmrFI	CCNGG	4 cut(s)	79, 118, 348, 566
BmsI	GCATC	2 cut(s)	627, 694
BpiI	GAAGAC	1 cut(s)	632
BpmI	CTGGAG	3 cut(s)	117, 203, 546
Bpu1102I	GCTNAGC	1 cut(s)	683
BpuEI	CTTGAG	3 cut(s)	137, 306, 698
BpuMI	CCSGG	1 cut(s)	79
BsaJI	CCNNGG	2 cut(s)	330, 636
BsaXI	ACNNNNNCTCC	2 cut(s)	328, 358
Bsc4I	CCNNNNNNNGG	3 cut(s)	353, 437, 599
Bse1I	ACTGG	5 cut(s)	229, 358, 391, 400, 529
BseBI	CCWGG	3 cut(s)	118, 348, 566
BseDI	CCNNGG	2 cut(s)	330, 636
BseGI	GGATG	2 cut(s)	61, 536
BseLI	CCNNNNNNNGG	3 cut(s)	353, 437, 599
BseMII	CTCAG	1 cut(s)	697
BseNI	ACTGG	5 cut(s)	229, 358, 391, 400, 529
BseRI	GAGGAG	2 cut(s)	567, 570
BseSI	GKGCMC	1 cut(s)	330
BseXI	GCAGC	2 cut(s)	86, 304
BseYI	CCCAGC	1 cut(s)	39
BshFI	GGCC	1 cut(s)	430
BsiHKAI	GWGCWC	1 cut(s)	684
BsiHKCI	CYCGRG	1 cut(s)	285
BsiSI	CCGG	1 cut(s)	78
BslI	CCNNNNNNNGG	3 cut(s)	353, 437, 599
BsmAI	GTCTC	1 cut(s)	221
BsnI	GGCC	1 cut(s)	430
BsoBI	CYCGRG	1 cut(s)	285
Bsp1286I	GDGCHC	3 cut(s)	286, 330, 684
Bsp1720I	GCTNAGC	1 cut(s)	683
Bsp19I	CCATGG	1 cut(s)	330
BspACI	CCGC	2 cut(s)	648, 657
BspANI	GGCC	1 cut(s)	430
BspCNI	CTCAG	1 cut(s)	696
BspHI	TCATGA	1 cut(s)	621
BsrI	ACTGG	5 cut(s)	229, 358, 391, 400, 529
BssECI	CCNNGG	2 cut(s)	330, 636
BssSI	CACGAG	1 cut(s)	206
BssT1I	CCWWGG	1 cut(s)	330
Bst2BI	CACGAG	1 cut(s)	206
Bst2UI	CCWGG	3 cut(s)	118, 348, 566
Bst6I	CTCTTC	2 cut(s)	296, 585
BstC8I	GCNNGC	1 cut(s)	432
BstDEI	CTNAG	2 cut(s)	683, 717
BstDSI	CCRYGG	1 cut(s)	330
BstF5I	GGATG	2 cut(s)	61, 536
BstH2I	RGCGCY	1 cut(s)	187
BstHHI	GCGC	1 cut(s)	186
BstMAI	GTCTC	1 cut(s)	221
BstMWI	GCNNNNNNNGC	2 cut(s)	654, 713
BstNI	CCWGG	3 cut(s)	118, 348, 566
BstNSI	RCATGY	1 cut(s)	242
BstSCI	CCNGG	4 cut(s)	77, 116, 346, 564
BstSFI	CTRYAG	2 cut(s)	192, 697
BstSLI	GKGCMC	1 cut(s)	330
BstV1I	GCAGC	2 cut(s)	86, 304
BstV2I	GAAGAC	1 cut(s)	632
BstX2I	RGATCY	7 cut(s)	147, 157, 210, 359, 407, 440, 488
BstYI	RGATCY	7 cut(s)	147, 157, 210, 359, 407, 440, 488
BsuRI	GGCC	1 cut(s)	430
BtgI	CCRYGG	1 cut(s)	330
BtsCI	GGATG	2 cut(s)	61, 536
BtsIMutI	CAGTG	1 cut(s)	384
Cac8I	GCNNGC	1 cut(s)	432
CciI	TCATGA	1 cut(s)	621
CfoI	GCGC	1 cut(s)	186
Cfr13I	GGNCC	3 cut(s)	381, 428, 462
Csp6I	GTAC	1 cut(s)	351
CviAII	CATG	6 cut(s)	239, 331, 595, 599, 622, 712
CviQI	GTAC	1 cut(s)	351
DdeI	CTNAG	2 cut(s)	683, 717
Eam1104I	CTCTTC	2 cut(s)	296, 585
EarI	CTCTTC	2 cut(s)	296, 585
Ecl136II	GAGCTC	1 cut(s)	682
Eco130I	CCWWGG	1 cut(s)	330
Eco24I	GRGCYC	2 cut(s)	286, 684
Eco47I	GGWCC	2 cut(s)	381, 462
Eco53kI	GAGCTC	1 cut(s)	682
Eco88I	CYCGRG	1 cut(s)	285
EcoICRI	GAGCTC	1 cut(s)	682
EcoRII	CCWGG	3 cut(s)	116, 346, 564
EcoT14I	CCWWGG	1 cut(s)	330
EcoT22I	ATGCAT	1 cut(s)	600
EcoT38I	GRGCYC	2 cut(s)	286, 684
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	6 cut(s)	242, 334, 598, 602, 625, 715
FaiI	YATR	9 cut(s)	201, 234, 240, 332, 596, 600, 623, 654, 713
FatI	CATG	6 cut(s)	238, 330, 594, 598, 621, 711
Fnu4HI	GCNGC	2 cut(s)	75, 318
FokI	GGATG	2 cut(s)	68, 523
FriOI	GRGCYC	2 cut(s)	286, 684
Fsp4HI	GCNGC	2 cut(s)	75, 318
FspBI	CTAG	2 cut(s)	339, 468
GlaI	GCGC	1 cut(s)	185
GluI	GCNGC	2 cut(s)	75, 318
GsaI	CCCAGC	1 cut(s)	43
GsuI	CTGGAG	3 cut(s)	117, 203, 546
HaeII	RGCGCY	1 cut(s)	187
HaeIII	GGCC	1 cut(s)	430
HapII	CCGG	1 cut(s)	78
HhaI	GCGC	1 cut(s)	186
Hin1II	CATG	6 cut(s)	242, 334, 598, 602, 625, 715
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HinfI	GANTC	1 cut(s)	518
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	2 cut(s)	554, 614
Hpy166II	GTNNAC	2 cut(s)	384, 465
Hpy188I	TCNGA	1 cut(s)	637
Hpy188III	TCNNGA	5 cut(s)	134, 206, 271, 287, 622
Hpy8I	GTNNAC	2 cut(s)	384, 465
HpyCH4V	TGCA	5 cut(s)	19, 309, 544, 598, 707
HpyF10VI	GCNNNNNNNGC	2 cut(s)	654, 713
HpyF3I	CTNAG	2 cut(s)	683, 717
Hsp92II	CATG	6 cut(s)	242, 334, 598, 602, 625, 715
HspAI	GCGC	1 cut(s)	184
LmnI	GCTCC	1 cut(s)	28
Lsp1109I	GCAGC	2 cut(s)	86, 304
LweI	GCATC	2 cut(s)	627, 694
MaeI	CTAG	2 cut(s)	339, 468
MboII	GAAGA	3 cut(s)	313, 572, 637
MflI	RGATCY	7 cut(s)	147, 157, 210, 359, 407, 440, 488
MhlI	GDGCHC	3 cut(s)	286, 330, 684
MluCI	AATT	3 cut(s)	373, 421, 454
Mph1103I	ATGCAT	1 cut(s)	600
MroXI	GAANNNNTTC	2 cut(s)	340, 579
MseI	TTAA	2 cut(s)	180, 495
MspA1I	CMGCKG	2 cut(s)	223, 434
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	4 cut(s)	79, 118, 348, 566
MvaI	CCWGG	3 cut(s)	118, 348, 566
MwoI	GCNNNNNNNGC	2 cut(s)	654, 713
NciI	CCSGG	1 cut(s)	79
NcoI	CCATGG	1 cut(s)	330
NlaIII	CATG	6 cut(s)	242, 334, 598, 602, 625, 715
NsiI	ATGCAT	1 cut(s)	600
NspI	RCATGY	1 cut(s)	242
PaeR7I	CTCGAG	1 cut(s)	285
PagI	TCATGA	1 cut(s)	621
PciI	ACATGT	1 cut(s)	238
PdmI	GAANNNNTTC	2 cut(s)	340, 579
PfeI	GAWTC	1 cut(s)	518
PflMI	CCANNNNNTGG	1 cut(s)	437
PkrI	GCNGC	2 cut(s)	76, 319
PscI	ACATGT	1 cut(s)	238
PshBI	ATTAAT	1 cut(s)	495
Psp124BI	GAGCTC	1 cut(s)	684
Psp6I	CCWGG	3 cut(s)	116, 346, 564
PspFI	CCCAGC	1 cut(s)	39
PspGI	CCWGG	3 cut(s)	116, 346, 564
PspPI	GGNCC	3 cut(s)	381, 428, 462
PsuI	RGATCY	7 cut(s)	147, 157, 210, 359, 407, 440, 488
PvuII	CAGCTG	2 cut(s)	223, 434
RsaI	GTAC	1 cut(s)	352
RsaNI	GTAC	1 cut(s)	351
SacI	GAGCTC	1 cut(s)	684
SaqAI	TTAA	2 cut(s)	180, 495
SatI	GCNGC	2 cut(s)	75, 318
Sau96I	GGNCC	3 cut(s)	381, 428, 462
ScrFI	CCNGG	4 cut(s)	79, 118, 348, 566
SduI	GDGCHC	3 cut(s)	286, 330, 684
SetI	ASST	7 cut(s)	33, 122, 225, 308, 436, 646, 684
SfaNI	GCATC	2 cut(s)	627, 694
SfcI	CTRYAG	2 cut(s)	192, 697
Sfr274I	CTCGAG	1 cut(s)	285
SinI	GGWCC	2 cut(s)	381, 462
SlaI	CTCGAG	1 cut(s)	285
SmlI	CTYRAG	4 cut(s)	152, 285, 321, 677
SmoI	CTYRAG	4 cut(s)	152, 285, 321, 677
SpeI	ACTAGT	2 cut(s)	338, 467
Sse9I	AATT	3 cut(s)	373, 421, 454
SsiI	CCGC	2 cut(s)	648, 657
SspMI	CTAG	2 cut(s)	339, 468
SstI	GAGCTC	1 cut(s)	684
StyD4I	CCNGG	4 cut(s)	77, 116, 346, 564
StyI	CCWWGG	1 cut(s)	330
TaqI	TCGA	3 cut(s)	51, 286, 414
TasI	AATT	3 cut(s)	373, 421, 454
TfiI	GAWTC	1 cut(s)	518
Tru1I	TTAA	2 cut(s)	180, 495
Tru9I	TTAA	2 cut(s)	180, 495
TscAI	CASTG	1 cut(s)	391
TseI	GCWGC	2 cut(s)	74, 317
TspDTI	ATGAA	2 cut(s)	314, 638
TspRI	CASTG	1 cut(s)	391
Van91I	CCANNNNNTGG	1 cut(s)	437
VpaK11BI	GGWCC	2 cut(s)	381, 462
VspI	ATTAAT	1 cut(s)	495
XceI	RCATGY	1 cut(s)	242
XhoI	CTCGAG	1 cut(s)	285
XmnI	GAANNNNTTC	2 cut(s)	340, 579
XspI	CTAG	2 cut(s)	339, 468
Zsp2I	ATGCAT	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.