Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003402

Physical Location & Seq

Genomic Coordinates Forward (+)

42761727 .. 42761882

Gene Structure 156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0280200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 156 bp

ATGGGTATGCGAAGGTCACTCATCTCCCTCCGAGTCATTCTAACCATATACCAATTATGTTACATGCTAGCACTATTCCCATTGCTAAACGCCCCAAACACTATAGGTTCAAGTTTGAAGCTTTTTGGTTGCAGCATGTTGATTGTGATCCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0008144 GO:0008150 GO:0008270 GO:0010035 GO:0010038 GO:0016020 GO:0019842 GO:0030170 GO:0031090 GO:0036094 GO:0042221 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048037 GO:0050662 GO:0050896 GO:0070279 GO:0097159 GO:0098588 GO:0098805 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00250 ko00260 ko00270 ko00280 ko01100 ko01110 map00250 map00260 map00270 map00280 map01100 map01110

Pfam Domains

Protein Families

Aminotran_3

Protein Analysis

51

Amino Acids

5.69

Weight (kDa)

9.84

Isoelectric Point (pI)

48.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39660 AT4G39660
fragaria_vesca	FvH4_1g21920
malus_domestica	MD15G1330500.v1.1
prunus_persica	Prupe.1G573800_v2.0.a1 Prupe.1G573800_v2.0.a1 Prupe.6G177100_v2.0.a1 Prupe.6G177100_v2.0.a1
pyrus_communis	pycom15g29470
rosa_chinensis	RchiOBHm_Chr2g0115931 RchiOBHm_Chr6g0298301
rosa_laevigata	RLG00000011518 RLG00000018224
rosa_multiflora	Rmu_sc0003420.1_g000003 Rmu_ssc0000197.1_g000006
rosa_roxburghii	Rroxscaffold_2G00127710 Rroxscaffold_2G00128500 Rroxscaffold_7G00169760
rosa_rugosa	Rorug02G0201300 Rorug06G0279900 Rorug06G0280000 Rorug06G0280100 Rorug06G0280200 Rorug06G0280300 Rorug06G0280300 Rorug06G0280400
rosa_samantha	Rh2AG258100 Rh2CG264700 Rh2DG266400 Rh6AG390800 Rh6BG399000 Rh6CG404900 Rh6DG391400
rosa_wichuraiana	Rw2G020240 Rw6G034120 Rw6G034160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	142
AgsI	TTSAA	2 cut(s)	111, 118
AluBI	AGCT	1 cut(s)	121
AluI	AGCT	1 cut(s)	121
AlwI	GGATC	1 cut(s)	142
ApeKI	GCWGC	1 cut(s)	132
AsuNHI	GCTAGC	1 cut(s)	67
BbvI	GCAGC	1 cut(s)	144
BfaI	CTAG	1 cut(s)	68
BfmI	CTRYAG	1 cut(s)	102
BisI	GCNGC	1 cut(s)	133
BlsI	GCNGC	1 cut(s)	134
BmtI	GCTAGC	1 cut(s)	71
BsaBI	GATNNNNATC	1 cut(s)	146
Bse3DI	GCAATG	1 cut(s)	80
Bse8I	GATNNNNATC	1 cut(s)	146
BseJI	GATNNNNATC	1 cut(s)	146
BseMI	GCAATG	1 cut(s)	80
BseXI	GCAGC	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	147
BspOI	GCTAGC	1 cut(s)	71
BspPI	GGATC	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	80
BssMI	GATC	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	1 cut(s)	153
BstKTI	GATC	1 cut(s)	150
BstMBI	GATC	1 cut(s)	147
BstNSI	RCATGY	2 cut(s)	67, 139
BstSFI	CTRYAG	1 cut(s)	102
BstV1I	GCAGC	1 cut(s)	144
Cac8I	GCNNGC	1 cut(s)	69
CviAII	CATG	2 cut(s)	64, 136
CviJI	RGCY	1 cut(s)	121
CviKI_1	RGCY	1 cut(s)	121
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
FaeI	CATG	2 cut(s)	67, 139
FaiI	YATR	7 cut(s)	8, 47, 49, 58, 65, 104, 137
FatI	CATG	2 cut(s)	63, 135
Fnu4HI	GCNGC	1 cut(s)	133
Fsp4HI	GCNGC	1 cut(s)	133
FspBI	CTAG	1 cut(s)	68
GluI	GCNGC	1 cut(s)	133
Hin1II	CATG	2 cut(s)	67, 139
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	1 cut(s)	33
Hpy188I	TCNGA	1 cut(s)	32
HpyAV	CCTTC	1 cut(s)	6
HpyCH4V	TGCA	1 cut(s)	132
HpyF3I	CTNAG	1 cut(s)	153
Hsp92II	CATG	2 cut(s)	67, 139
Kzo9I	GATC	1 cut(s)	147
Lsp1109I	GCAGC	1 cut(s)	144
MaeI	CTAG	1 cut(s)	68
MaeIII	GTNAC	2 cut(s)	15, 59
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MluCI	AATT	1 cut(s)	53
MlyI	GAGTC	1 cut(s)	42
MnlI	CCTC	1 cut(s)	38
NdeII	GATC	1 cut(s)	147
NheI	GCTAGC	1 cut(s)	67
NlaIII	CATG	2 cut(s)	67, 139
NmuCI	GTSAC	1 cut(s)	15
NspI	RCATGY	2 cut(s)	67, 139
PkrI	GCNGC	1 cut(s)	134
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
SatI	GCNGC	1 cut(s)	133
Sau3AI	GATC	1 cut(s)	147
SchI	GAGTC	1 cut(s)	42
SetI	ASST	3 cut(s)	17, 109, 123
SfcI	CTRYAG	1 cut(s)	102
SgeI	CNNG	5 cut(s)	44, 76, 80, 123, 148
Sse9I	AATT	1 cut(s)	53
SspMI	CTAG	1 cut(s)	68
TasI	AATT	1 cut(s)	53
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	1 cut(s)	132
Tsp45I	GTSAC	1 cut(s)	15
XceI	RCATGY	2 cut(s)	67, 139
XspI	CTAG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.