FvH4_1g21920

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
13858013 .. 13862432
4420 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g21920.t1

Sequence Viewer

Length: 1437 bp
ATGGCGTTTCAGCTATTCAGAGTGGTTGTAAGAGACTTGGCCAAACCCAAGATTGGTTGTGCTAGAGTGTCTTCTTCTTTCTCTACCCTTCAGCCTAATGCTTCTGACGAAGCTGATGTGCCTTCTTTGCCGCCGTTCAATTACGAGCCGAGGCCGTACAATGGGCCACGCGCCGATGAGATCTTCGAGAAGCGGAAGAAGTTTCTGGGTCCTTCTCTTTTCCACTTCTACCAGAAGCCTATCAATATTGTAGAAGGGAAGATGCAATATCTGTTTGATGAGGATGGCAGGCGCTACCTCGATGCTTTTGCCGGAATCGTGACTGTTTCTTGCGGACATTGTCATCCGGTTGTTTTAAAGGCTATAACGGAGCAGAGTCAGCTTCTTCAGCATGCTACAACCATATACTTGCACCACGCAATCGCAGATTTCGCAGAGGCGTTGGCTTCAAAAATGCCTGGAAATCTCAAGGTTGTATACGTTGTAAATTCTGGGACAGAAGCTAATGAGTTAGCAATGCTGATGGCCCGTCTGTACAGTGGCAGTCTGGGTATGATTGCGTTGAGAAATGCATATCATGGTGGAAGCTCGAATACGATTGGTTTGACAGCATTGAACACATGGAAGTATCCAATTCCACAGGGCGAAATTCATCACGTGGTAAATCCAGACCCATACCGTGGGATCTTTGGCGCTGATGCCAAATGTTATGCCAAAGATGTGCAAGATCACATCGATTACGGCACTTCTGGAAAAATTGCTGGATATATATCCGAAACAATTCAGGGAGTCGGAGGAACCATTGAATTGGCTCCTGGTTATTTAAAGATGGTTTATGACATTGTCCGAAAGGCTGGTGGTGTCTGTATTGCTGATGAAGTACAGACTGGGTTTGGCCGCACCGGAAGTCACTATTGGGGATTTGAAACCCAGGGTGTTATTCCTGACATTGTTACTATGGCCAAGGGAATTGGAAATGGATTGCCCTTGGGAGCAGTGGTTACTACTCCTGAAATCGCAAGTGTACTGGCACAGAAAATACTGTTCAACACTTATGGTGGAAACCCTGTATGCTCTGCGGGAGGGCTTGCAGTTCTCAAAGTCATTGATGAGGAGAAGCGTCAAAGTCACTCTGCTGATGTTGGCTCACATTTGCTTGCACGTTTGAGAGATCTTCAACAGCAACATGACATCATTGGAGATATCAGAGGTAGAGGATTGATGGTGGGAGTGGAGCTGGTGACCGATAGGACTGAAAAGACACCTGCCAAGGCAGAAACTGCGGTTTTGTTTGAAAAACTTCGAGAGCTTGGAATCCTGGTTGGCAAAGGTGGTTTGCATGGTAACGTTTTTCGAATAAAACCACCAATGTGTTTTAACAAGGACGATGCAGATTTTCTTGTAGATGCACTGGACTATTCTATGTCAAAGTTGTGA

Protein Analysis

479

Amino Acids

52.01

Weight (kDa)

6.74

Isoelectric Point (pI)

30.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_3 PF00202 80 - 471 7e-85 Aminotransferase class-III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1273
Acc36I ACCTGC 1 cut(s) 1273
AccB7I CCANNNNNTGG 1 cut(s) 680
AccI GTMKAC 1 cut(s) 477
AccII CGCG 1 cut(s) 171
AciI CCGC 6 cut(s) 131, 193, 333, 898, 1079, 1283
AclI AACGTT 1 cut(s) 1347
AclWI GGATC 1 cut(s) 692
AcoI YGGCCR 3 cut(s) 39, 895, 960
AcsI RAATTY 2 cut(s) 487, 648
AcuI CTGAAG 2 cut(s) 74, 371
AcvI CACGTG 1 cut(s) 658
AfaI GTAC 4 cut(s) 158, 536, 882, 1026
AfiI CCNNNNNNNGG 3 cut(s) 53, 161, 680
AgsI TTSAA 8 cut(s) 139, 450, 616, 806, 926, 1048, 1178, 1295
AjnI CCWGG 4 cut(s) 457, 814, 930, 1317
AjuI GAANNNNNNNTTGG 2 cut(s) 898, 930
AleI CACNNNNGTG 1 cut(s) 1369
AluBI AGCT 7 cut(s) 13, 113, 382, 503, 588, 1237, 1309
AluI AGCT 7 cut(s) 13, 113, 382, 503, 588, 1237, 1309
Alw26I GTCTC 1 cut(s) 27
AlwI GGATC 1 cut(s) 692
AlwNI CAGNNNCTG 1 cut(s) 1280
AoxI GGCC 6 cut(s) 39, 152, 164, 525, 895, 960
ApoI RAATTY 2 cut(s) 487, 648
Asp700I GAANNNNTTC 2 cut(s) 780, 1299
AspLEI GCGC 3 cut(s) 173, 294, 695
AspS9I GGNCC 3 cut(s) 164, 209, 526
AsuHPI GGTGA 1 cut(s) 1252
AsuII TTCGAA 1 cut(s) 1354
AvaII GGWCC 1 cut(s) 209
BalI TGGCCA 2 cut(s) 41, 962
BarI GAAGNNNNNNTAC 2 cut(s) 577, 609
BbrPI CACGTG 1 cut(s) 658
BbsI GAAGAC 1 cut(s) 63
BccI CCATC 4 cut(s) 278, 517, 823, 1216
BceAI ACGGC 3 cut(s) 118, 139, 757
BcgI CGANNNNNNTGC 2 cut(s) 290, 324
BciT130I CCWGG 4 cut(s) 459, 816, 932, 1319
BciVI GTATCC 1 cut(s) 639
BcoDI GTCTC 1 cut(s) 27
BfaI CTAG 1 cut(s) 63
BfoI RGCGCY 2 cut(s) 295, 696
BfuAI ACCTGC 1 cut(s) 1273
BfuI GTATCC 1 cut(s) 639
BglII AGATCT 2 cut(s) 180, 1171
BisI GCNGC 2 cut(s) 131, 898
BlsI GCNGC 2 cut(s) 132, 899
Bme1390I CCNGG 4 cut(s) 459, 816, 932, 1319
Bme18I GGWCC 1 cut(s) 209
BmgT120I GGNCC 3 cut(s) 164, 209, 526
BmiI GGNNCC 3 cut(s) 210, 799, 813
BmrFI CCNGG 4 cut(s) 459, 816, 932, 1319
BmrI ACTGGG 1 cut(s) 897
BmsI GCATC 5 cut(s) 252, 292, 688, 1378, 1396
BmuI ACTGGG 1 cut(s) 897
BpiI GAAGAC 1 cut(s) 63
Bpu14I TTCGAA 1 cut(s) 1354
BpuEI CTTGAG 1 cut(s) 452
Bsa29I ATCGAT 1 cut(s) 735
BsaAI YACGTR 1 cut(s) 658
BsaBI GATNNNNATC 1 cut(s) 769
BsaJI CCNNGG 7 cut(s) 149, 679, 930, 931, 963, 987, 1269
BsaWI WCCGGW 2 cut(s) 346, 902
BsaXI ACNNNNNCTCC 2 cut(s) 984, 1014
Bsc4I CCNNNNNNNGG 3 cut(s) 53, 161, 680
Bse1I ACTGG 3 cut(s) 892, 1032, 1416
Bse3DI GCAATG 1 cut(s) 522
Bse8I GATNNNNATC 1 cut(s) 769
BseBI CCWGG 4 cut(s) 459, 816, 932, 1319
BseCI ATCGAT 1 cut(s) 735
BseDI CCNNGG 7 cut(s) 149, 679, 930, 931, 963, 987, 1269
BseGI GGATG 2 cut(s) 289, 343
BseJI GATNNNNATC 1 cut(s) 769
BseLI CCNNNNNNNGG 3 cut(s) 53, 161, 680
BseMI GCAATG 1 cut(s) 522
BseNI ACTGG 3 cut(s) 892, 1032, 1416
BseRI GAGGAG 1 cut(s) 1127
Bsh1236I CGCG 1 cut(s) 171
BshFI GGCC 6 cut(s) 41, 154, 166, 527, 897, 962
BshVI ATCGAT 1 cut(s) 735
BsiSI CCGG 3 cut(s) 312, 347, 903
BslFI GGGAC 1 cut(s) 508
BslI CCNNNNNNNGG 3 cut(s) 53, 161, 680
BsmAI GTCTC 1 cut(s) 27
BsmFI GGGAC 1 cut(s) 508
BsnI GGCC 6 cut(s) 41, 154, 166, 527, 897, 962
Bsp119I TTCGAA 1 cut(s) 1354
Bsp1407I TGTACA 1 cut(s) 534
Bsp143I GATC 4 cut(s) 180, 684, 727, 1171
BspACI CCGC 6 cut(s) 131, 193, 333, 898, 1079, 1283
BspANI GGCC 6 cut(s) 41, 154, 166, 527, 897, 962
BspDI ATCGAT 1 cut(s) 735
BspFNI CGCG 1 cut(s) 171
BspLI GGNNCC 3 cut(s) 210, 799, 813
BspMI ACCTGC 1 cut(s) 1273
BspPI GGATC 1 cut(s) 692
BspT104I TTCGAA 1 cut(s) 1354
BsrDI GCAATG 1 cut(s) 522
BsrGI TGTACA 1 cut(s) 534
BsrI ACTGG 3 cut(s) 892, 1032, 1416
BssECI CCNNGG 7 cut(s) 149, 679, 930, 931, 963, 987, 1269
BssMI GATC 4 cut(s) 180, 684, 727, 1171
BssNAI GTATAC 1 cut(s) 478
BssT1I CCWWGG 3 cut(s) 963, 987, 1269
Bst1107I GTATAC 1 cut(s) 478
Bst2UI CCWGG 4 cut(s) 459, 816, 932, 1319
Bst4CI ACNGT 4 cut(s) 325, 539, 680, 1044
BstAPI GCANNNNNTGC 1 cut(s) 1280
BstAUI TGTACA 1 cut(s) 534
BstBAI YACGTR 1 cut(s) 658
BstBI TTCGAA 1 cut(s) 1354
BstC8I GCNNGC 4 cut(s) 290, 393, 1089, 1158
BstDSI CCRYGG 1 cut(s) 679
BstEII GGTNACC 1 cut(s) 1240
BstF5I GGATG 2 cut(s) 289, 343
BstFNI CGCG 1 cut(s) 171
BstH2I RGCGCY 2 cut(s) 295, 696
BstHHI GCGC 3 cut(s) 173, 294, 695
BstKTI GATC 4 cut(s) 183, 687, 730, 1174
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 4 cut(s) 180, 684, 727, 1171
BstMWI GCNNNNNNNGC 5 cut(s) 127, 379, 388, 431, 1280
BstNI CCWGG 4 cut(s) 459, 816, 932, 1319
BstNSI RCATGY 1 cut(s) 395
BstPI GGTNACC 1 cut(s) 1240
BstSCI CCNGG 4 cut(s) 457, 814, 930, 1317
BstUI CGCG 1 cut(s) 171
BstV2I GAAGAC 1 cut(s) 63
BstX2I RGATCY 3 cut(s) 180, 684, 1171
BstXI CCANNNNNNTGG 1 cut(s) 808
BstYI RGATCY 3 cut(s) 180, 684, 1171
BstZ17I GTATAC 1 cut(s) 478
Bsu15I ATCGAT 1 cut(s) 735
BsuI GTATCC 1 cut(s) 639
BsuRI GGCC 6 cut(s) 41, 154, 166, 527, 897, 962
BsuTUI ATCGAT 1 cut(s) 735
BtgI CCRYGG 1 cut(s) 679
BtsCI GGATG 2 cut(s) 289, 343
BtsI GCAGTG 1 cut(s) 1002
BtsIMutI CAGTG 3 cut(s) 544, 1002, 1409
BveI ACCTGC 1 cut(s) 1273
Cac8I GCNNGC 4 cut(s) 290, 393, 1089, 1158
CaiI CAGNNNCTG 1 cut(s) 1280
CfoI GCGC 3 cut(s) 173, 294, 695
Cfr13I GGNCC 3 cut(s) 164, 209, 526
ClaI ATCGAT 1 cut(s) 735
CseI GACGC 1 cut(s) 1109
Csp6I GTAC 4 cut(s) 157, 535, 881, 1025
CviAII CATG 5 cut(s) 392, 578, 621, 1187, 1340
CviQI GTAC 4 cut(s) 157, 535, 881, 1025
DpnI GATC 4 cut(s) 182, 686, 729, 1173
DpnII GATC 4 cut(s) 180, 684, 727, 1171
DraI TTTAAA 2 cut(s) 357, 825
EaeI YGGCCR 3 cut(s) 39, 895, 960
Eco130I CCWWGG 3 cut(s) 963, 987, 1269
Eco32I GATATC 1 cut(s) 1204
Eco47I GGWCC 1 cut(s) 209
Eco57I CTGAAG 2 cut(s) 74, 371
Eco72I CACGTG 1 cut(s) 658
Eco91I GGTNACC 1 cut(s) 1240
EcoO109I RGGNCCY 1 cut(s) 209
EcoO65I GGTNACC 1 cut(s) 1240
EcoRII CCWGG 4 cut(s) 457, 814, 930, 1317
EcoRV GATATC 1 cut(s) 1204
EcoT14I CCWWGG 3 cut(s) 963, 987, 1269
EcoT22I ATGCAT 1 cut(s) 574
ErhI CCWWGG 3 cut(s) 963, 987, 1269
FaeI CATG 5 cut(s) 395, 581, 624, 1190, 1343
FaqI GGGAC 1 cut(s) 508
FatI CATG 5 cut(s) 391, 577, 620, 1186, 1339
FauI CCCGC 1 cut(s) 1072
FblI GTMKAC 1 cut(s) 477
Fnu4HI GCNGC 2 cut(s) 131, 898
FokI GGATG 2 cut(s) 296, 330
Fsp4HI GCNGC 2 cut(s) 131, 898
FspBI CTAG 1 cut(s) 63
GlaI GCGC 3 cut(s) 172, 293, 694
GluI GCNGC 2 cut(s) 131, 898
HaeII RGCGCY 2 cut(s) 295, 696
HaeIII GGCC 6 cut(s) 41, 154, 166, 527, 897, 962
HapII CCGG 3 cut(s) 312, 347, 903
HgaI GACGC 1 cut(s) 1109
HhaI GCGC 3 cut(s) 173, 294, 695
Hin1II CATG 5 cut(s) 395, 581, 624, 1190, 1343
Hin6I GCGC 3 cut(s) 171, 292, 693
HinP1I GCGC 3 cut(s) 171, 292, 693
HinfI GANTC 4 cut(s) 315, 376, 789, 1314
HpaII CCGG 3 cut(s) 312, 347, 903
HphI GGTGA 1 cut(s) 1252
Hpy166II GTNNAC 2 cut(s) 478, 1025
Hpy188I TCNGA 6 cut(s) 20, 106, 775, 794, 848, 1208
Hpy188III TCNNGA 7 cut(s) 187, 319, 668, 750, 944, 1010, 1304
Hpy8I GTNNAC 2 cut(s) 478, 1025
HpyAV CCTTC 4 cut(s) 98, 132, 222, 248
HpyCH4III ACNGT 4 cut(s) 325, 539, 680, 1044
HpyCH4IV ACGT 4 cut(s) 480, 657, 1162, 1347
HpyCH4V TGCA 9 cut(s) 265, 412, 572, 724, 1091, 1160, 1339, 1391, 1409
HpyF10VI GCNNNNNNNGC 5 cut(s) 127, 379, 388, 431, 1280
HpySE526I ACGT 4 cut(s) 480, 657, 1162, 1347
Hsp92II CATG 5 cut(s) 395, 581, 624, 1190, 1343
HspAI GCGC 3 cut(s) 171, 292, 693
Kzo9I GATC 4 cut(s) 180, 684, 727, 1171
LmnI GCTCC 4 cut(s) 370, 817, 992, 1234
LweI GCATC 5 cut(s) 252, 292, 688, 1378, 1396
MaeI CTAG 1 cut(s) 63
MaeII ACGT 4 cut(s) 480, 657, 1162, 1347
MaeIII GTNAC 7 cut(s) 319, 908, 952, 1000, 1127, 1240, 1343
MalI GATC 4 cut(s) 182, 686, 729, 1173
MboI GATC 4 cut(s) 180, 684, 727, 1171
MboII GAAGA 7 cut(s) 63, 66, 175, 208, 271, 377, 1166
MflI RGATCY 3 cut(s) 180, 684, 1171
MlsI TGGCCA 2 cut(s) 41, 962
MluCI AATT 8 cut(s) 139, 487, 633, 648, 756, 780, 806, 969
MluNI TGGCCA 2 cut(s) 41, 962
MlyI GAGTC 2 cut(s) 385, 798
MmeI TCCRAC 1 cut(s) 772
MnlI CCTC 9 cut(s) 144, 274, 308, 430, 788, 1076, 1105, 1202, 1208
Mox20I TGGCCA 2 cut(s) 41, 962
Mph1103I ATGCAT 1 cut(s) 574
MroXI GAANNNNTTC 2 cut(s) 780, 1299
MscI TGGCCA 2 cut(s) 41, 962
MseI TTAA 3 cut(s) 356, 824, 1377
MslI CAYNNNNRTG 1 cut(s) 1369
Msp20I TGGCCA 2 cut(s) 41, 962
MspI CCGG 3 cut(s) 312, 347, 903
MspR9I CCNGG 4 cut(s) 459, 816, 932, 1319
MvaI CCWGG 4 cut(s) 459, 816, 932, 1319
MvnI CGCG 1 cut(s) 171
MwoI GCNNNNNNNGC 5 cut(s) 127, 379, 388, 431, 1280
NdeII GATC 4 cut(s) 180, 684, 727, 1171
NlaIII CATG 5 cut(s) 395, 581, 624, 1190, 1343
NlaIV GGNNCC 3 cut(s) 210, 799, 813
NmeAIII GCCGAG 1 cut(s) 174
NmuCI GTSAC 4 cut(s) 319, 908, 1127, 1240
NsiI ATGCAT 1 cut(s) 574
NspI RCATGY 1 cut(s) 395
NspV TTCGAA 1 cut(s) 1354
OliI CACNNNNGTG 1 cut(s) 1369
PaeI GCATGC 1 cut(s) 395
PaqCI CACCTGC 1 cut(s) 1273
PasI CCCWGGG 1 cut(s) 931
PdmI GAANNNNTTC 2 cut(s) 780, 1299
PfeI GAWTC 2 cut(s) 315, 1314
PflFI GACNNNGTC 2 cut(s) 339, 842
PflMI CCANNNNNTGG 1 cut(s) 680
PkrI GCNGC 2 cut(s) 132, 899
PleI GAGTC 2 cut(s) 384, 797
PmaCI CACGTG 1 cut(s) 658
PmlI CACGTG 1 cut(s) 658
PpsI GAGTC 2 cut(s) 384, 797
Ppu21I YACGTR 1 cut(s) 658
PpuMI RGGWCCY 1 cut(s) 209
Psp1406I AACGTT 1 cut(s) 1347
Psp5II RGGWCCY 1 cut(s) 209
Psp6I CCWGG 4 cut(s) 457, 814, 930, 1317
PspCI CACGTG 1 cut(s) 658
PspEI GGTNACC 1 cut(s) 1240
PspGI CCWGG 4 cut(s) 457, 814, 930, 1317
PspN4I GGNNCC 3 cut(s) 210, 799, 813
PspPI GGNCC 3 cut(s) 164, 209, 526
PspPPI RGGWCCY 1 cut(s) 209
PstNI CAGNNNCTG 1 cut(s) 1280
PsuI RGATCY 3 cut(s) 180, 684, 1171
PsyI GACNNNGTC 2 cut(s) 339, 842
RsaI GTAC 4 cut(s) 158, 536, 882, 1026
RsaNI GTAC 4 cut(s) 157, 535, 881, 1025
RseI CAYNNNNRTG 1 cut(s) 1369
SaqAI TTAA 3 cut(s) 356, 824, 1377
SatI GCNGC 2 cut(s) 131, 898
Sau3AI GATC 4 cut(s) 180, 684, 727, 1171
Sau96I GGNCC 3 cut(s) 164, 209, 526
SchI GAGTC 2 cut(s) 385, 798
ScrFI CCNGG 4 cut(s) 459, 816, 932, 1319
SfaNI GCATC 5 cut(s) 252, 292, 688, 1378, 1396
SfuI TTCGAA 1 cut(s) 1354
SinI GGWCC 1 cut(s) 209
SmiMI CAYNNNNRTG 1 cut(s) 1369
SmlI CTYRAG 1 cut(s) 467
SmoI CTYRAG 1 cut(s) 467
SphI GCATGC 1 cut(s) 395
Sse9I AATT 8 cut(s) 139, 487, 633, 648, 756, 780, 806, 969
SsiI CCGC 6 cut(s) 131, 193, 333, 898, 1079, 1283
SspI AATATT 1 cut(s) 247
SspMI CTAG 1 cut(s) 63
StyD4I CCNGG 4 cut(s) 457, 814, 930, 1317
StyI CCWWGG 3 cut(s) 963, 987, 1269
TaaI ACNGT 4 cut(s) 325, 539, 680, 1044
TaiI ACGT 4 cut(s) 483, 660, 1165, 1350
TaqI TCGA 6 cut(s) 186, 300, 590, 735, 1303, 1354
TaqII GACCGA 1 cut(s) 1259
TasI AATT 8 cut(s) 139, 487, 633, 648, 756, 780, 806, 969
TatI WGTACW 3 cut(s) 534, 880, 1024
TauI GCSGC 2 cut(s) 133, 900
TfiI GAWTC 2 cut(s) 315, 1314
Tru1I TTAA 3 cut(s) 356, 824, 1377
Tru9I TTAA 3 cut(s) 356, 824, 1377
TscAI CASTG 3 cut(s) 544, 1002, 1416
TseFI GTSAC 4 cut(s) 319, 908, 1127, 1240
Tsp45I GTSAC 4 cut(s) 319, 908, 1127, 1240
TspDTI ATGAA 2 cut(s) 641, 891
TspGWI ACGGA 1 cut(s) 383
TspRI CASTG 3 cut(s) 544, 1002, 1416
Tth111I GACNNNGTC 2 cut(s) 339, 842
Van91I CCANNNNNTGG 1 cut(s) 680
VpaK11BI GGWCC 1 cut(s) 209
XapI RAATTY 2 cut(s) 487, 648
XceI RCATGY 1 cut(s) 395
XmiI GTMKAC 1 cut(s) 477
XmnI GAANNNNTTC 2 cut(s) 780, 1299
XspI CTAG 1 cut(s) 63
Zsp2I ATGCAT 1 cut(s) 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.