Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003207

Physical Location & Seq

Genomic Coordinates Reverse (-)

18822762 .. 18827388

Gene Structure 4627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0201300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGAAGTTTCTCGTAATATTGGTTCTCTTCTTTTTCTTTGCTAAATTTGATGCAATTAGATATGATCTACAGGGTGATGTGTCGAGAACGATCACTGTCAGTAAGAATGGTCGAGGGCAATTTAGCACTGTACAACAAGCCATTGATTCCATACCATCAAATAATGCATGGTGGATCCGGATCCATATTAACCATGGTGTCTACAATGAAAAGGTTACAATCCCTCAAGACAAACCGTACATTATTCTTGAAGGAAACCCTAATCATCTTACAACAATCGATTTTGGAGATGCTGGCAGTGTTGTTGCCAGTCCTACATTCAAGGCACATGCAGATAATTTTGTGGCAAAAAATATAGTATTCAAGAATACTTACGACCACCTTATCACATTGGAGCCGAATGGGAGGAAAACTACTTGGGCACCTGCTGCTGCAATAGATGGAGACAAAGCAAGTTTCTATTACTGCACTTTCATTAGCTTGCAAGATACACTGTCTGATGCCCAAGGTCGACACTATTTCTATGACTGCAACATTCAAGGTGCTATAGACTTTATTTGGGGAAATGGCCAGTCAATTTACGAGAAATGTCAGATAACTTCGTTAGTCCACAAACTAGGCCAGAATGGTGGTTATATCACTGCACAGGGTCGCGAAAGACCTGAGGAAACTACTGGGTTTGTATTCAAAGATTGCCATGTATGTGGATCAGGACCTATAATGCTAGGAAGAGCATACAGAGCATACGCAAGAGTATTGTTTTCTGGGACATATATGGAAAACATTATTACACCCCAGGGCTGGTCAGAATGGCAAGTCAAACCAGTGGATTCAATCACATTCTCAGAGGCGAAATGCAGGATTCAATGGGAGAAGAAGTTATCGAATGATGAAGTCATGAGTTTAGCAAATACAGCTTCTTTTATAACTCAAGATGGACGATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0008144 GO:0008150 GO:0008270 GO:0010035 GO:0010038 GO:0016020 GO:0019842 GO:0030170 GO:0031090 GO:0036094 GO:0042221 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048037 GO:0050662 GO:0050896 GO:0070279 GO:0097159 GO:0098588 GO:0098805 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00250 ko00260 ko00270 ko00280 ko01100 ko01110 map00250 map00260 map00270 map00280 map01100 map01110

Pfam Domains

Protein Families

Aminotran_3

Protein Analysis

315

Amino Acids

35.48

Weight (kDa)

6.7

Isoelectric Point (pI)

34.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pectinesterase	PF01095	31 - 284	1.2e-51	Pectinesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43630 AT3G59640 AT3G59640
fragaria_vesca	FvH4_1g21910 FvH4_1g21910 FvH4_4g10550 FvH4_4g10550 FvH4_4g10550
malus_domestica	MD08G1231200.v1.1 MD10G1168700.v1.1 MD15G1424100.v1.1
prunus_persica	Prupe.1G205800_v2.0.a1 Prupe.1G570000_v2.0.a1
pyrus_communis	pycom08g20100 pycom15g37610
rosa_chinensis	RchiOBHm_Chr2g0115921 RchiOBHm_Chr4g0406201
rosa_laevigata	RLG00000008790 RLG00000018223
rosa_multiflora	Rmu_sc0012210.1_g000002 Rmu_sc0041989.1_g000001 Rmu_ssc0000197.1_g000008
rosa_roxburghii	Rroxscaffold_2G00127700 Rroxscaffold_2G00128510 Rroxscaffold_5G00350910
rosa_rugosa	Rorug02G0201300 Rorug04G0066100
rosa_samantha	Rh2AG257900 Rh2BG269000 Rh2CG264500 Rh2DG266200 Rh4AG136200 Rh4BG133600 Rh4CG144400 Rh4DG131100
rosa_wichuraiana	Rw2G020230 Rw4G011170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	926
AarI	CACCTGC	1 cut(s)	433
Acc36I	ACCTGC	1 cut(s)	433
AccB1I	GGYRCC	1 cut(s)	421
AccI	GTMKAC	2 cut(s)	201, 511
AccII	CGCG	1 cut(s)	654
AccIII	TCCGGA	1 cut(s)	177
AclWI	GGATC	5 cut(s)	169, 175, 182, 188, 715
AcoI	YGGCCR	1 cut(s)	568
AcsI	RAATTY	1 cut(s)	44
AfaI	GTAC	2 cut(s)	132, 239
AfiI	CCNNNNNNNGG	1 cut(s)	801
AgsI	TTSAA	7 cut(s)	251, 322, 364, 539, 688, 834, 866
AjnI	CCWGG	1 cut(s)	795
AluBI	AGCT	2 cut(s)	480, 917
AluI	AGCT	2 cut(s)	480, 917
Alw26I	GTCTC	1 cut(s)	438
AlwI	GGATC	5 cut(s)	169, 175, 182, 188, 715
Aor13HI	TCCGGA	1 cut(s)	177
AoxI	GGCC	2 cut(s)	568, 619
ApeKI	GCWGC	2 cut(s)	428, 431
ApoI	RAATTY	1 cut(s)	44
AspS9I	GGNCC	1 cut(s)	713
AsuHPI	GGTGA	1 cut(s)	86
AvaII	GGWCC	1 cut(s)	713
AxyI	CCTNAGG	1 cut(s)	663
BaeGI	GKGCMC	1 cut(s)	424
BalI	TGGCCA	1 cut(s)	570
BamHI	GGATCC	2 cut(s)	174, 180
BanI	GGYRCC	1 cut(s)	421
BbvI	GCAGC	2 cut(s)	415, 418
BccI	CCATC	3 cut(s)	163, 434, 929
BciT130I	CCWGG	1 cut(s)	797
BcoDI	GTCTC	1 cut(s)	438
BfaI	CTAG	2 cut(s)	617, 725
BfmI	CTRYAG	2 cut(s)	68, 546
BfuAI	ACCTGC	1 cut(s)	433
BisI	GCNGC	2 cut(s)	429, 432
BlsI	GCNGC	2 cut(s)	430, 433
Bme1390I	CCNGG	1 cut(s)	797
Bme18I	GGWCC	1 cut(s)	713
BmgT120I	GGNCC	1 cut(s)	713
BmiI	GGNNCC	4 cut(s)	176, 182, 396, 423
BmrFI	CCNGG	1 cut(s)	797
BmrI	ACTGGG	1 cut(s)	684
BmsI	GCATC	3 cut(s)	40, 280, 490
BmuI	ACTGGG	1 cut(s)	684
BpuEI	CTTGAG	2 cut(s)	210, 915
Bsa29I	ATCGAT	1 cut(s)	279
BsaBI	GATNNNNATC	1 cut(s)	179
BsaJI	CCNNGG	4 cut(s)	193, 505, 795, 796
BsaWI	WCCGGW	1 cut(s)	177
BsaXI	ACNNNNNCTCC	2 cut(s)	863, 893
Bsc4I	CCNNNNNNNGG	1 cut(s)	801
Bse1I	ACTGG	4 cut(s)	309, 571, 679, 824
Bse21I	CCTNAGG	1 cut(s)	663
Bse8I	GATNNNNATC	1 cut(s)	179
BseAI	TCCGGA	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	797
BseCI	ATCGAT	1 cut(s)	279
BseDI	CCNNGG	4 cut(s)	193, 505, 795, 796
BseJI	GATNNNNATC	1 cut(s)	179
BseLI	CCNNNNNNNGG	1 cut(s)	801
BseMII	CTCAG	2 cut(s)	654, 858
BseNI	ACTGG	4 cut(s)	309, 571, 679, 824
BseSI	GKGCMC	1 cut(s)	424
BseXI	GCAGC	2 cut(s)	415, 418
BsgI	GTGCAG	2 cut(s)	451, 627
Bsh1236I	CGCG	1 cut(s)	654
BshFI	GGCC	2 cut(s)	570, 621
BshNI	GGYRCC	1 cut(s)	421
BshVI	ATCGAT	1 cut(s)	279
BsiSI	CCGG	1 cut(s)	178
BslFI	GGGAC	1 cut(s)	781
BslI	CCNNNNNNNGG	1 cut(s)	801
BsmAI	GTCTC	1 cut(s)	438
BsmFI	GGGAC	1 cut(s)	781
BsnI	GGCC	2 cut(s)	570, 621
Bsp1286I	GDGCHC	1 cut(s)	424
Bsp13I	TCCGGA	1 cut(s)	177
Bsp1407I	TGTACA	1 cut(s)	130
Bsp143I	GATC	5 cut(s)	64, 90, 174, 180, 707
Bsp19I	CCATGG	1 cut(s)	193
Bsp68I	TCGCGA	1 cut(s)	654
BspANI	GGCC	2 cut(s)	570, 621
BspCNI	CTCAG	2 cut(s)	655, 857
BspDI	ATCGAT	1 cut(s)	279
BspEI	TCCGGA	1 cut(s)	177
BspFNI	CGCG	1 cut(s)	654
BspHI	TCATGA	1 cut(s)	897
BspLI	GGNNCC	4 cut(s)	176, 182, 396, 423
BspMI	ACCTGC	1 cut(s)	433
BspPI	GGATC	5 cut(s)	169, 175, 182, 188, 715
BspQI	GCTCTTC	1 cut(s)	724
BspT107I	GGYRCC	1 cut(s)	421
BsrGI	TGTACA	1 cut(s)	130
BsrI	ACTGG	4 cut(s)	309, 571, 679, 824
BssECI	CCNNGG	4 cut(s)	193, 505, 795, 796
BssMI	GATC	5 cut(s)	64, 90, 174, 180, 707
BssT1I	CCWWGG	2 cut(s)	193, 505
Bst2UI	CCWGG	1 cut(s)	797
Bst4CI	ACNGT	4 cut(s)	97, 130, 237, 495
Bst6I	CTCTTC	2 cut(s)	32, 724
BstAPI	GCANNNNNTGC	1 cut(s)	428
BstAUI	TGTACA	1 cut(s)	130
BstC8I	GCNNGC	2 cut(s)	295, 482
BstDEI	CTNAG	2 cut(s)	663, 844
BstDSI	CCRYGG	1 cut(s)	193
BstFNI	CGCG	1 cut(s)	654
BstKTI	GATC	5 cut(s)	67, 93, 177, 183, 710
BstMAI	GTCTC	1 cut(s)	438
BstMBI	GATC	5 cut(s)	64, 90, 174, 180, 707
BstMWI	GCNNNNNNNGC	3 cut(s)	428, 740, 914
BstNI	CCWGG	1 cut(s)	797
BstNSI	RCATGY	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	795
BstSFI	CTRYAG	2 cut(s)	68, 546
BstSLI	GKGCMC	1 cut(s)	424
BstUI	CGCG	1 cut(s)	654
BstV1I	GCAGC	2 cut(s)	415, 418
BstX2I	RGATCY	2 cut(s)	174, 180
BstXI	CCANNNNNNTGG	2 cut(s)	629, 704
BstYI	RGATCY	2 cut(s)	174, 180
Bsu15I	ATCGAT	1 cut(s)	279
Bsu36I	CCTNAGG	1 cut(s)	663
BsuRI	GGCC	2 cut(s)	570, 621
BsuTUI	ATCGAT	1 cut(s)	279
BtgI	CCRYGG	1 cut(s)	193
BtsI	GCAGTG	2 cut(s)	304, 639
BtsIMutI	CAGTG	6 cut(s)	93, 126, 304, 491, 639, 831
BtuMI	TCGCGA	1 cut(s)	654
BveI	ACCTGC	1 cut(s)	433
Cac8I	GCNNGC	2 cut(s)	295, 482
CciI	TCATGA	1 cut(s)	897
Cfr13I	GGNCC	1 cut(s)	713
ClaI	ATCGAT	1 cut(s)	279
Csp6I	GTAC	2 cut(s)	131, 238
CviAII	CATG	5 cut(s)	168, 194, 329, 698, 898
CviJI	RGCY	7 cut(s)	140, 397, 480, 570, 621, 801, 917
CviKI_1	RGCY	7 cut(s)	140, 397, 480, 570, 621, 801, 917
CviQI	GTAC	2 cut(s)	131, 238
DdeI	CTNAG	2 cut(s)	663, 844
DpnI	GATC	5 cut(s)	66, 92, 176, 182, 709
DpnII	GATC	5 cut(s)	64, 90, 174, 180, 707
EaeI	YGGCCR	1 cut(s)	568
Eam1104I	CTCTTC	2 cut(s)	32, 724
EarI	CTCTTC	2 cut(s)	32, 724
Eco130I	CCWWGG	2 cut(s)	193, 505
Eco47I	GGWCC	1 cut(s)	713
Eco81I	CCTNAGG	1 cut(s)	663
EcoO109I	RGGNCCY	1 cut(s)	713
EcoRII	CCWGG	1 cut(s)	795
EcoT14I	CCWWGG	2 cut(s)	193, 505
EcoT22I	ATGCAT	1 cut(s)	169
ErhI	CCWWGG	2 cut(s)	193, 505
FaeI	CATG	5 cut(s)	171, 197, 332, 701, 901
FaqI	GGGAC	1 cut(s)	781
FatI	CATG	5 cut(s)	167, 193, 328, 697, 897
FblI	GTMKAC	2 cut(s)	201, 511
Fnu4HI	GCNGC	2 cut(s)	429, 432
Fsp4HI	GCNGC	2 cut(s)	429, 432
FspBI	CTAG	2 cut(s)	617, 725
GluI	GCNGC	2 cut(s)	429, 432
HaeIII	GGCC	2 cut(s)	570, 621
HapII	CCGG	1 cut(s)	178
Hin1II	CATG	5 cut(s)	171, 197, 332, 701, 901
HincII	GTYRAC	1 cut(s)	512
HindII	GTYRAC	1 cut(s)	512
HinfI	GANTC	3 cut(s)	146, 830, 862
HpaII	CCGG	1 cut(s)	178
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	3 cut(s)	202, 512, 610
Hpy188I	TCNGA	4 cut(s)	499, 594, 808, 847
Hpy188III	TCNNGA	9 cut(s)	84, 178, 227, 248, 364, 653, 711, 898, 932
Hpy8I	GTNNAC	3 cut(s)	202, 512, 610
HpyAV	CCTTC	1 cut(s)	245
HpyCH4III	ACNGT	4 cut(s)	97, 130, 237, 495
HpyCH4V	TGCA	9 cut(s)	53, 167, 332, 434, 468, 484, 531, 644, 858
HpyF10VI	GCNNNNNNNGC	3 cut(s)	428, 740, 914
HpyF3I	CTNAG	2 cut(s)	663, 844
Hsp92II	CATG	5 cut(s)	171, 197, 332, 701, 901
Kpn2I	TCCGGA	1 cut(s)	177
Kzo9I	GATC	5 cut(s)	64, 90, 174, 180, 707
LguI	GCTCTTC	1 cut(s)	724
LmnI	GCTCC	1 cut(s)	394
Lsp1109I	GCAGC	2 cut(s)	415, 418
LweI	GCATC	3 cut(s)	40, 280, 490
MaeI	CTAG	2 cut(s)	617, 725
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	5 cut(s)	66, 92, 176, 182, 709
MboI	GATC	5 cut(s)	64, 90, 174, 180, 707
MboII	GAAGA	3 cut(s)	19, 741, 886
MflI	RGATCY	2 cut(s)	174, 180
MhlI	GDGCHC	1 cut(s)	424
MlsI	TGGCCA	1 cut(s)	570
MluCI	AATT	5 cut(s)	44, 54, 119, 337, 576
MluNI	TGGCCA	1 cut(s)	570
MnlI	CCTC	5 cut(s)	107, 234, 399, 658, 841
Mox20I	TGGCCA	1 cut(s)	570
Mph1103I	ATGCAT	1 cut(s)	169
MroI	TCCGGA	1 cut(s)	177
MscI	TGGCCA	1 cut(s)	570
MseI	TTAA	1 cut(s)	189
MslI	CAYNNNNRTG	1 cut(s)	702
Msp20I	TGGCCA	1 cut(s)	570
MspI	CCGG	1 cut(s)	178
MspR9I	CCNGG	1 cut(s)	797
MvaI	CCWGG	1 cut(s)	797
MvnI	CGCG	1 cut(s)	654
MwoI	GCNNNNNNNGC	3 cut(s)	428, 740, 914
NcoI	CCATGG	1 cut(s)	193
NdeII	GATC	5 cut(s)	64, 90, 174, 180, 707
NlaIII	CATG	5 cut(s)	171, 197, 332, 701, 901
NlaIV	GGNNCC	4 cut(s)	176, 182, 396, 423
NruI	TCGCGA	1 cut(s)	654
NsiI	ATGCAT	1 cut(s)	169
NspI	RCATGY	1 cut(s)	332
PagI	TCATGA	1 cut(s)	897
PaqCI	CACCTGC	1 cut(s)	433
PasI	CCCWGGG	1 cut(s)	796
PciSI	GCTCTTC	1 cut(s)	724
PfeI	GAWTC	3 cut(s)	146, 830, 862
PkrI	GCNGC	2 cut(s)	430, 433
PpuMI	RGGWCCY	1 cut(s)	713
PsiI	TTATAA	1 cut(s)	926
Psp5II	RGGWCCY	1 cut(s)	713
Psp6I	CCWGG	1 cut(s)	795
PspGI	CCWGG	1 cut(s)	795
PspN4I	GGNNCC	4 cut(s)	176, 182, 396, 423
PspPI	GGNCC	1 cut(s)	713
PspPPI	RGGWCCY	1 cut(s)	713
PsrI	GAACNNNNNNTAC	1 cut(s)	38
PsuI	RGATCY	2 cut(s)	174, 180
RruI	TCGCGA	1 cut(s)	654
RsaI	GTAC	2 cut(s)	132, 239
RsaNI	GTAC	2 cut(s)	131, 238
RseI	CAYNNNNRTG	1 cut(s)	702
SalI	GTCGAC	1 cut(s)	510
SapI	GCTCTTC	1 cut(s)	724
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	2 cut(s)	429, 432
Sau3AI	GATC	5 cut(s)	64, 90, 174, 180, 707
Sau96I	GGNCC	1 cut(s)	713
ScrFI	CCNGG	1 cut(s)	797
SduI	GDGCHC	1 cut(s)	424
SetI	ASST	9 cut(s)	216, 384, 427, 482, 511, 544, 664, 718, 919
SfaNI	GCATC	3 cut(s)	40, 280, 490
SfcI	CTRYAG	2 cut(s)	68, 546
SinI	GGWCC	1 cut(s)	713
SmiMI	CAYNNNNRTG	1 cut(s)	702
SmlI	CTYRAG	2 cut(s)	225, 930
SmoI	CTYRAG	2 cut(s)	225, 930
Sse9I	AATT	5 cut(s)	44, 54, 119, 337, 576
SspI	AATATT	1 cut(s)	18
SspMI	CTAG	2 cut(s)	617, 725
StyD4I	CCNGG	1 cut(s)	795
StyI	CCWWGG	2 cut(s)	193, 505
TaaI	ACNGT	4 cut(s)	97, 130, 237, 495
TaqI	TCGA	5 cut(s)	83, 112, 279, 511, 884
TasI	AATT	5 cut(s)	44, 54, 119, 337, 576
TatI	WGTACW	1 cut(s)	130
TfiI	GAWTC	3 cut(s)	146, 830, 862
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	6 cut(s)	100, 133, 304, 498, 646, 831
TseI	GCWGC	2 cut(s)	428, 431
TspDTI	ATGAA	4 cut(s)	17, 222, 463, 906
TspRI	CASTG	6 cut(s)	100, 133, 304, 498, 646, 831
VpaK11BI	GGWCC	1 cut(s)	713
XapI	RAATTY	1 cut(s)	44
XceI	RCATGY	1 cut(s)	332
XcmI	CCANNNNNNNNNTGG	1 cut(s)	191
XmiI	GTMKAC	2 cut(s)	201, 511
XspI	CTAG	2 cut(s)	617, 725
Zsp2I	ATGCAT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.