Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003207

Physical Location & Seq

Genomic Coordinates Forward (+)

20789444 .. 20792876

Gene Structure 3433 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G205800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGAGTACCTTTCAGATTACTTCCTCCCAACCTAGCATCTGTTTCAGAAACACGTCTCAAGCTCTCCGTCCATCTCCAAAGCTTCTTGTTCCAACTTGTTTGCAGCCAACCTATAATGCATCCATTCGGCAACAACGGATGCCGGTTTTGAAGGCTCAGCAATGCAGGGTTTTATCCAAGTACCATCAATCTGCACCTGTCTGCTTGTTAGGTGGCAAGGGAAAGAGTGAAAGTGGTGATGAGGGTTCCCCTTGGAAAGCCCTTGAGAAAGCAATGGGTAATTTGAAGAAAGACCAGTCGATAGAGGATGTATTACGTCAGCAGATTGAAAGGAATGAATTTTATGAAGAGAGAGGAGGAGGTGGTGGTGGTGGTGGTGGCAGTGGCAGTGGCAGAGGCAGCGGCGGTGATGGTACAGGTGGTTCTGGATCAGAGGATGAAGGCCTTGCTGGAATCATGGATGAAACACTGCAAGTGATTCTCGCAACCGTTGGATTTCTTTTTCTGTATTTTTACATCATCAGCGGTGAGGAGTGGACTCGGCTAGCAAAGGATTATATCAAGTTTCTCTTATCGGGGTCCAAGAGTATTCGTTTACAGCGTTCCATGTACAAATGGGGAAGGTTCTACAAGAATCTGACTGAGAAGAAGTATTATGATAAGTTCTGGTTGGAGAAGGCCATAATCACTACACCAACTTGGTGGGATAGCCCCGAAAAGTACCGGCACATCGTTAGATCTAATTTAGAATCAAATTCAGATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

256

Amino Acids

28.48

Weight (kDa)

9.03

Isoelectric Point (pI)

65.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43630 AT3G59640 AT3G59640
fragaria_vesca	FvH4_1g21910 FvH4_1g21910 FvH4_4g10550 FvH4_4g10550 FvH4_4g10550
malus_domestica	MD08G1231200.v1.1 MD10G1168700.v1.1 MD15G1424100.v1.1
prunus_persica	Prupe.1G205800_v2.0.a1 Prupe.1G570000_v2.0.a1
pyrus_communis	pycom08g20100 pycom15g37610
rosa_chinensis	RchiOBHm_Chr2g0115921 RchiOBHm_Chr4g0406201
rosa_laevigata	RLG00000008790 RLG00000018223
rosa_multiflora	Rmu_sc0012210.1_g000002 Rmu_sc0041989.1_g000001 Rmu_ssc0000197.1_g000008
rosa_roxburghii	Rroxscaffold_2G00127700 Rroxscaffold_2G00128510 Rroxscaffold_5G00350910
rosa_rugosa	Rorug02G0201300 Rorug04G0066100
rosa_samantha	Rh2AG257900 Rh2BG269000 Rh2CG264500 Rh2DG266200 Rh4AG136200 Rh4BG133600 Rh4CG144400 Rh4DG131100
rosa_wichuraiana	Rw2G020230 Rw4G011170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	402, 405, 525
AclWI	GGATC	1 cut(s)	436
AcsI	RAATTY	2 cut(s)	338, 754
AfaI	GTAC	5 cut(s)	7, 182, 415, 611, 722
AflIII	ACRYGT	1 cut(s)	51
AgsI	TTSAA	3 cut(s)	151, 286, 329
AjiI	CACGTC	1 cut(s)	54
AluBI	AGCT	2 cut(s)	62, 82
AluI	AGCT	2 cut(s)	62, 82
Alw26I	GTCTC	1 cut(s)	60
AlwI	GGATC	1 cut(s)	436
AoxI	GGCC	2 cut(s)	442, 678
ApeKI	GCWGC	2 cut(s)	103, 399
ApoI	RAATTY	2 cut(s)	338, 754
AspS9I	GGNCC	1 cut(s)	579
AsuHPI	GGTGA	3 cut(s)	248, 419, 539
AsuNHI	GCTAGC	1 cut(s)	544
AvaII	GGWCC	1 cut(s)	579
BbvI	GCAGC	2 cut(s)	115, 411
BccI	CCATC	3 cut(s)	79, 192, 404
BcoDI	GTCTC	1 cut(s)	60
BfaI	CTAG	2 cut(s)	33, 545
BglII	AGATCT	1 cut(s)	737
BisI	GCNGC	3 cut(s)	104, 400, 403
BlpI	GCTNAGC	1 cut(s)	156
BlsI	GCNGC	3 cut(s)	105, 401, 404
Bme18I	GGWCC	1 cut(s)	579
BmgBI	CACGTC	1 cut(s)	54
BmgT120I	GGNCC	1 cut(s)	579
BmiI	GGNNCC	2 cut(s)	247, 580
BmsI	GCATC	3 cut(s)	45, 128, 129
BmtI	GCTAGC	1 cut(s)	548
Bpu1102I	GCTNAGC	1 cut(s)	156
BpuEI	CTTGAG	2 cut(s)	42, 284
BsaJI	CCNNGG	1 cut(s)	251
Bse118I	RCCGGY	2 cut(s)	142, 723
Bse1I	ACTGG	1 cut(s)	295
Bse3DI	GCAATG	2 cut(s)	167, 279
BseDI	CCNNGG	1 cut(s)	251
BseGI	GGATG	5 cut(s)	119, 144, 313, 442, 466
BseMI	GCAATG	2 cut(s)	167, 279
BseMII	CTCAG	2 cut(s)	170, 633
BseNI	ACTGG	1 cut(s)	295
BseRI	GAGGAG	3 cut(s)	369, 372, 545
BseXI	GCAGC	2 cut(s)	115, 411
BsgI	GTGCAG	1 cut(s)	177
BshFI	GGCC	2 cut(s)	444, 680
BsiSI	CCGG	2 cut(s)	143, 724
BsmAI	GTCTC	1 cut(s)	60
BsmBI	CGTCTC	1 cut(s)	60
BsnI	GGCC	2 cut(s)	444, 680
Bsp1407I	TGTACA	1 cut(s)	609
Bsp143I	GATC	2 cut(s)	428, 737
Bsp1720I	GCTNAGC	1 cut(s)	156
BspACI	CCGC	3 cut(s)	402, 405, 525
BspANI	GGCC	2 cut(s)	444, 680
BspCNI	CTCAG	2 cut(s)	169, 634
BspLI	GGNNCC	2 cut(s)	247, 580
BspOI	GCTAGC	1 cut(s)	548
BspPI	GGATC	1 cut(s)	436
BsrDI	GCAATG	2 cut(s)	167, 279
BsrFI	RCCGGY	2 cut(s)	142, 723
BsrGI	TGTACA	1 cut(s)	609
BsrI	ACTGG	1 cut(s)	295
BssAI	RCCGGY	2 cut(s)	142, 723
BssECI	CCNNGG	1 cut(s)	251
BssMI	GATC	2 cut(s)	428, 737
BssT1I	CCWWGG	1 cut(s)	251
Bst4CI	ACNGT	1 cut(s)	490
Bst6I	CTCTTC	1 cut(s)	342
BstAUI	TGTACA	1 cut(s)	609
BstC8I	GCNNGC	1 cut(s)	546
BstDEI	CTNAG	2 cut(s)	156, 642
BstF5I	GGATG	5 cut(s)	119, 144, 313, 442, 466
BstKTI	GATC	2 cut(s)	431, 740
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	2 cut(s)	428, 737
BstMWI	GCNNNNNNNGC	1 cut(s)	399
BstV1I	GCAGC	2 cut(s)	115, 411
BstX2I	RGATCY	1 cut(s)	737
BstXI	CCANNNNNNTGG	1 cut(s)	702
BstYI	RGATCY	1 cut(s)	737
BsuRI	GGCC	2 cut(s)	444, 680
BtrI	CACGTC	1 cut(s)	54
BtsCI	GGATG	5 cut(s)	119, 144, 313, 442, 466
BtsI	GCAGTG	3 cut(s)	388, 394, 467
BtsIMutI	CAGTG	3 cut(s)	388, 394, 467
Cac8I	GCNNGC	1 cut(s)	546
Cfr10I	RCCGGY	2 cut(s)	142, 723
Cfr13I	GGNCC	1 cut(s)	579
Csp6I	GTAC	5 cut(s)	6, 181, 414, 610, 721
CviAII	CATG	2 cut(s)	457, 607
CviJI	RGCY	9 cut(s)	62, 82, 106, 155, 260, 444, 544, 680, 711
CviKI_1	RGCY	9 cut(s)	62, 82, 106, 155, 260, 444, 544, 680, 711
CviQI	GTAC	5 cut(s)	6, 181, 414, 610, 721
DdeI	CTNAG	2 cut(s)	156, 642
DpnI	GATC	2 cut(s)	430, 739
DpnII	GATC	2 cut(s)	428, 737
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
Eco130I	CCWWGG	1 cut(s)	251
Eco147I	AGGCCT	1 cut(s)	444
Eco47I	GGWCC	1 cut(s)	579
EcoT14I	CCWWGG	1 cut(s)	251
EcoT22I	ATGCAT	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	251
Esp3I	CGTCTC	1 cut(s)	60
FaeI	CATG	2 cut(s)	460, 610
FaiI	YATR	7 cut(s)	114, 345, 458, 558, 608, 657, 683
FalI	AAGNNNNNCTT	2 cut(s)	554, 586
FatI	CATG	2 cut(s)	456, 606
Fnu4HI	GCNGC	3 cut(s)	104, 400, 403
FokI	GGATG	5 cut(s)	106, 151, 320, 449, 473
Fsp4HI	GCNGC	3 cut(s)	104, 400, 403
FspBI	CTAG	2 cut(s)	33, 545
GluI	GCNGC	3 cut(s)	104, 400, 403
HaeIII	GGCC	2 cut(s)	444, 680
HapII	CCGG	2 cut(s)	143, 724
Hin1II	CATG	2 cut(s)	460, 610
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	5 cut(s)	453, 478, 538, 634, 749
HpaII	CCGG	2 cut(s)	143, 724
HphI	GGTGA	3 cut(s)	248, 419, 539
Hpy166II	GTNNAC	2 cut(s)	537, 596
Hpy188I	TCNGA	5 cut(s)	15, 47, 433, 639, 760
Hpy188III	TCNNGA	1 cut(s)	426
Hpy8I	GTNNAC	2 cut(s)	537, 596
HpyAV	CCTTC	4 cut(s)	145, 434, 615, 670
HpyCH4III	ACNGT	1 cut(s)	490
HpyCH4IV	ACGT	2 cut(s)	53, 316
HpyCH4V	TGCA	5 cut(s)	103, 119, 165, 194, 472
HpyF10VI	GCNNNNNNNGC	1 cut(s)	399
HpyF3I	CTNAG	2 cut(s)	156, 642
HpySE526I	ACGT	2 cut(s)	53, 316
Hsp92II	CATG	2 cut(s)	460, 610
Kzo9I	GATC	2 cut(s)	428, 737
LpnPI	CCDG	9 cut(s)	151, 156, 210, 308, 402, 411, 435, 652, 737
Lsp1109I	GCAGC	2 cut(s)	115, 411
LweI	GCATC	3 cut(s)	45, 128, 129
MaeI	CTAG	2 cut(s)	33, 545
MaeII	ACGT	2 cut(s)	53, 316
MalI	GATC	2 cut(s)	430, 739
MboI	GATC	2 cut(s)	428, 737
MboII	GAAGA	3 cut(s)	298, 359, 658
MflI	RGATCY	1 cut(s)	737
MluCI	AATT	4 cut(s)	280, 338, 742, 754
MlyI	GAGTC	1 cut(s)	532
MmeI	TCCRAC	3 cut(s)	116, 472, 651
MnlI	CCTC	9 cut(s)	34, 235, 298, 347, 350, 353, 389, 427, 523
Mph1103I	ATGCAT	1 cut(s)	121
MspA1I	CMGCKG	2 cut(s)	402, 525
MspI	CCGG	2 cut(s)	143, 724
MwoI	GCNNNNNNNGC	1 cut(s)	399
NdeII	GATC	2 cut(s)	428, 737
NheI	GCTAGC	1 cut(s)	544
NlaIII	CATG	2 cut(s)	460, 610
NlaIV	GGNNCC	2 cut(s)	247, 580
NmeAIII	GCCGAG	1 cut(s)	520
NsiI	ATGCAT	1 cut(s)	121
PceI	AGGCCT	1 cut(s)	444
PcsI	WCGNNNNNNNCGW	1 cut(s)	598
PfeI	GAWTC	4 cut(s)	453, 478, 634, 749
PkrI	GCNGC	3 cut(s)	105, 401, 404
PleI	GAGTC	1 cut(s)	532
PpsI	GAGTC	1 cut(s)	532
PspN4I	GGNNCC	2 cut(s)	247, 580
PspPI	GGNCC	1 cut(s)	579
PsrI	GAACNNNNNNTAC	2 cut(s)	406, 438
PsuI	RGATCY	1 cut(s)	737
RsaI	GTAC	5 cut(s)	7, 182, 415, 611, 722
RsaNI	GTAC	5 cut(s)	6, 181, 414, 610, 721
SatI	GCNGC	3 cut(s)	104, 400, 403
Sau3AI	GATC	2 cut(s)	428, 737
Sau96I	GGNCC	1 cut(s)	579
SchI	GAGTC	1 cut(s)	532
SfaNI	GCATC	3 cut(s)	45, 128, 129
SinI	GGWCC	1 cut(s)	579
SmlI	CTYRAG	2 cut(s)	57, 263
SmoI	CTYRAG	2 cut(s)	57, 263
Sse9I	AATT	4 cut(s)	280, 338, 742, 754
SseBI	AGGCCT	1 cut(s)	444
SsiI	CCGC	3 cut(s)	402, 405, 525
SspMI	CTAG	2 cut(s)	33, 545
StuI	AGGCCT	1 cut(s)	444
StyI	CCWWGG	1 cut(s)	251
TaaI	ACNGT	1 cut(s)	490
TaiI	ACGT	2 cut(s)	56, 319
TaqI	TCGA	1 cut(s)	299
TasI	AATT	4 cut(s)	280, 338, 742, 754
TatI	WGTACW	1 cut(s)	609
TauI	GCSGC	1 cut(s)	405
TfiI	GAWTC	4 cut(s)	453, 478, 634, 749
TscAI	CASTG	3 cut(s)	388, 394, 474
TseI	GCWGC	2 cut(s)	103, 399
TspDTI	ATGAA	4 cut(s)	351, 360, 453, 477
TspGWI	ACGGA	2 cut(s)	56, 151
TspRI	CASTG	3 cut(s)	388, 394, 474
VpaK11BI	GGWCC	1 cut(s)	579
XapI	RAATTY	2 cut(s)	338, 754
XspI	CTAG	2 cut(s)	33, 545
Zsp2I	ATGCAT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.