Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003207

Physical Location & Seq

Genomic Coordinates Reverse (-)

14306809 .. 14309427

Gene Structure 2619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g10550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGAGCATCGTGCCGATTAGTTCATGCAATCCTAGCATATGTCTTAGACACAACTCTATATCTCTTCGTCTGCCTACTAAGCCATGTATTTTACCAATCCGTGCTAAACATGTTCTTAGAAATCCTCTGGTAGCAACCTGTAAGGCCGCAGTTCAGCAACGGTGCATGACTGTATTGAAGAACAACCGATGCAGGGCGGCATCTACGTCCCAACACTCATTACCTGTCTGCTTATTGGGTGGAAAAGGAAAAAATGGAAGTGACAACGAGGGTTCTCCCTGGAAATCTCTGGAGAAAGCAATGGGTAATTTGAAGAAGGAAAGTTCAATAGAGGATGTATTACGTCAGCAGATAGAAAAGAATGAATTCTATGAAGACAAAGACAGTGGTACACGTGGTGGTGGTAGTGGTGGCGGCGGCAATGGTGGCGGAGGTGGTGGCGGCGCCGATCCATCTGGTGGATCAGAAGATGAAGGCTTTGCTGGAATCATTGATGAAACATTGCAAGTGATTCTAGCAACCATTGGATTTATATTTCTGTATGTTTACATCATCGATGGCGAGGAGTGGACTCGGCTAGCAAAGGACTACCTCAAGTATCTTTTTTCAGGGTCTGAGAGTGTTCGCCTAAGACGTGCCATGTACAACTGGGGAAGGTTCTACCAGAAGCTGACTGAGAAAAAGGTGTATGATAAGTACTGGTTGGAGAAGGCCATAATCAGTACCCCAACTTGGTGGGATAGCCCGGCCAAGTATCACTACATAAATGAGAGCATTAGATCTCATTTAGAATCAGATTCTGATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

270

Amino Acids

29.76

Weight (kDa)

8.57

Isoelectric Point (pI)

55.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43630 AT3G59640 AT3G59640
fragaria_vesca	FvH4_1g21910 FvH4_1g21910 FvH4_4g10550 FvH4_4g10550 FvH4_4g10550
malus_domestica	MD08G1231200.v1.1 MD10G1168700.v1.1 MD15G1424100.v1.1
prunus_persica	Prupe.1G205800_v2.0.a1 Prupe.1G570000_v2.0.a1
pyrus_communis	pycom08g20100 pycom15g37610
rosa_chinensis	RchiOBHm_Chr2g0115921 RchiOBHm_Chr4g0406201
rosa_laevigata	RLG00000008790 RLG00000018223
rosa_multiflora	Rmu_sc0012210.1_g000002 Rmu_sc0041989.1_g000001 Rmu_ssc0000197.1_g000008
rosa_roxburghii	Rroxscaffold_2G00127700 Rroxscaffold_2G00128510 Rroxscaffold_5G00350910
rosa_rugosa	Rorug02G0201300 Rorug04G0066100
rosa_samantha	Rh2AG257900 Rh2BG269000 Rh2CG264500 Rh2DG266200 Rh4AG136200 Rh4BG133600 Rh4CG144400 Rh4DG131100
rosa_wichuraiana	Rw2G020230 Rw4G011170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	443
AccB7I	CCANNNNNTGG	1 cut(s)	458
AciI	CCGC	6 cut(s)	147, 197, 414, 417, 429, 441
AclWI	GGATC	2 cut(s)	443, 469
AcoI	YGGCCR	1 cut(s)	747
AcsI	RAATTY	1 cut(s)	365
AcvI	CACGTG	1 cut(s)	395
AcyI	GRCGYC	1 cut(s)	444
AdeI	CACNNNGTG	1 cut(s)	398
AfaI	GTAC	4 cut(s)	391, 644, 698, 724
AfiI	CCNNNNNNNGG	3 cut(s)	193, 458, 732
AflIII	ACRYGT	2 cut(s)	109, 392
AgsI	TTSAA	3 cut(s)	178, 313, 327
AjiI	CACGTC	1 cut(s)	635
AjnI	CCWGG	1 cut(s)	278
AluBI	AGCT	1 cut(s)	670
AluI	AGCT	1 cut(s)	670
AlwI	GGATC	2 cut(s)	443, 469
AlwNI	CAGNNNCTG	3 cut(s)	614, 670, 800
AoxI	GGCC	3 cut(s)	144, 711, 747
ApoI	RAATTY	1 cut(s)	365
Asp700I	GAANNNNTTC	1 cut(s)	365
AspLEI	GCGC	1 cut(s)	446
AsuC2I	CCSGG	1 cut(s)	746
AsuNHI	GCTAGC	1 cut(s)	577
BanI	GGYRCC	1 cut(s)	443
BbrPI	CACGTG	1 cut(s)	395
BbsI	GAAGAC	1 cut(s)	381
BccI	CCATC	2 cut(s)	460, 551
BciT130I	CCWGG	1 cut(s)	280
BcnI	CCSGG	1 cut(s)	746
BfaI	CTAG	3 cut(s)	33, 515, 578
BfoI	RGCGCY	1 cut(s)	447
BglII	AGATCT	1 cut(s)	779
BisI	GCNGC	5 cut(s)	147, 198, 415, 418, 442
BlsI	GCNGC	5 cut(s)	148, 199, 416, 419, 443
BmcAI	AGTACT	1 cut(s)	698
Bme1390I	CCNGG	2 cut(s)	280, 746
BmgBI	CACGTC	1 cut(s)	635
BmiI	GGNNCC	1 cut(s)	445
BmrFI	CCNGG	2 cut(s)	280, 746
BmrI	ACTGGG	1 cut(s)	658
BmsI	GCATC	3 cut(s)	15, 179, 209
BmtI	GCTAGC	1 cut(s)	581
BmuI	ACTGGG	1 cut(s)	658
BpiI	GAAGAC	1 cut(s)	381
BpmI	CTGGAG	1 cut(s)	311
BpuEI	CTTGAG	1 cut(s)	578
BpuMI	CCSGG	1 cut(s)	746
Bsa29I	ATCGAT	1 cut(s)	555
BsaAI	YACGTR	1 cut(s)	395
BsaHI	GRCGYC	1 cut(s)	444
BsaJI	CCNNGG	1 cut(s)	278
Bsc4I	CCNNNNNNNGG	3 cut(s)	193, 458, 732
Bse1I	ACTGG	2 cut(s)	653, 704
Bse3DI	GCAATG	3 cut(s)	306, 427, 500
BseBI	CCWGG	1 cut(s)	280
BseCI	ATCGAT	1 cut(s)	555
BseDI	CCNNGG	1 cut(s)	278
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	3 cut(s)	193, 458, 732
BseMI	GCAATG	3 cut(s)	306, 427, 500
BseMII	CTCAG	2 cut(s)	606, 666
BseNI	ACTGG	2 cut(s)	653, 704
BseRI	GAGGAG	1 cut(s)	578
BshFI	GGCC	3 cut(s)	146, 713, 749
BshNI	GGYRCC	1 cut(s)	443
BshVI	ATCGAT	1 cut(s)	555
BsiSI	CCGG	1 cut(s)	746
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	3 cut(s)	193, 458, 732
BsmFI	GGGAC	1 cut(s)	193
BsnI	GGCC	3 cut(s)	146, 713, 749
Bsp1407I	TGTACA	1 cut(s)	642
Bsp143I	GATC	3 cut(s)	448, 461, 779
BspACI	CCGC	6 cut(s)	147, 197, 414, 417, 429, 441
BspANI	GGCC	3 cut(s)	146, 713, 749
BspCNI	CTCAG	2 cut(s)	607, 667
BspDI	ATCGAT	1 cut(s)	555
BspLI	GGNNCC	1 cut(s)	445
BspOI	GCTAGC	1 cut(s)	581
BspPI	GGATC	2 cut(s)	443, 469
BspT107I	GGYRCC	1 cut(s)	443
BsrDI	GCAATG	3 cut(s)	306, 427, 500
BsrGI	TGTACA	1 cut(s)	642
BsrI	ACTGG	2 cut(s)	653, 704
BssECI	CCNNGG	1 cut(s)	278
BssMI	GATC	3 cut(s)	448, 461, 779
BssNI	GRCGYC	1 cut(s)	444
Bst2UI	CCWGG	1 cut(s)	280
Bst4CI	ACNGT	3 cut(s)	162, 172, 386
Bst6I	CTCTTC	1 cut(s)	69
BstACI	GRCGYC	1 cut(s)	444
BstAUI	TGTACA	1 cut(s)	642
BstBAI	YACGTR	1 cut(s)	395
BstC8I	GCNNGC	1 cut(s)	579
BstDEI	CTNAG	6 cut(s)	44, 78, 116, 615, 629, 675
BstF5I	GGATG	1 cut(s)	340
BstH2I	RGCGCY	1 cut(s)	447
BstHHI	GCGC	1 cut(s)	446
BstKTI	GATC	3 cut(s)	451, 464, 782
BstMBI	GATC	3 cut(s)	448, 461, 779
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 79, 426
BstNI	CCWGG	1 cut(s)	280
BstNSI	RCATGY	1 cut(s)	113
BstSCI	CCNGG	2 cut(s)	278, 744
BstV2I	GAAGAC	1 cut(s)	381
BstX2I	RGATCY	1 cut(s)	779
BstXI	CCANNNNNNTGG	1 cut(s)	735
BstYI	RGATCY	1 cut(s)	779
Bsu15I	ATCGAT	1 cut(s)	555
BsuRI	GGCC	3 cut(s)	146, 713, 749
BsuTUI	ATCGAT	1 cut(s)	555
BtrI	CACGTC	1 cut(s)	635
BtsCI	GGATG	1 cut(s)	340
BtsIMutI	CAGTG	1 cut(s)	391
Cac8I	GCNNGC	1 cut(s)	579
CaiI	CAGNNNCTG	3 cut(s)	614, 670, 800
CfoI	GCGC	1 cut(s)	446
ClaI	ATCGAT	1 cut(s)	555
Csp6I	GTAC	4 cut(s)	390, 643, 697, 723
CspCI	CAANNNNNGTGG	2 cut(s)	367, 402
CviAII	CATG	5 cut(s)	24, 84, 110, 166, 640
CviJI	RGCY	8 cut(s)	82, 146, 477, 577, 670, 713, 744, 749
CviKI_1	RGCY	8 cut(s)	82, 146, 477, 577, 670, 713, 744, 749
CviQI	GTAC	4 cut(s)	390, 643, 697, 723
DdeI	CTNAG	6 cut(s)	44, 78, 116, 615, 629, 675
DinI	GGCGCC	1 cut(s)	445
DpnI	GATC	3 cut(s)	450, 463, 781
DpnII	GATC	3 cut(s)	448, 461, 779
DraIII	CACNNNGTG	1 cut(s)	398
EaeI	YGGCCR	1 cut(s)	747
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
EciI	GGCGGA	1 cut(s)	444
Eco72I	CACGTG	1 cut(s)	395
EcoRI	GAATTC	1 cut(s)	365
EcoRII	CCWGG	1 cut(s)	278
EgeI	GGCGCC	1 cut(s)	445
EheI	GGCGCC	1 cut(s)	445
FaeI	CATG	5 cut(s)	27, 87, 113, 169, 643
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	5 cut(s)	23, 83, 109, 165, 639
FauNDI	CATATG	1 cut(s)	38
Fnu4HI	GCNGC	5 cut(s)	147, 198, 415, 418, 442
FokI	GGATG	1 cut(s)	347
Fsp4HI	GCNGC	5 cut(s)	147, 198, 415, 418, 442
FspBI	CTAG	3 cut(s)	33, 515, 578
GlaI	GCGC	1 cut(s)	445
GluI	GCNGC	5 cut(s)	147, 198, 415, 418, 442
GsuI	CTGGAG	1 cut(s)	311
HaeII	RGCGCY	1 cut(s)	447
HaeIII	GGCC	3 cut(s)	146, 713, 749
HapII	CCGG	1 cut(s)	746
HhaI	GCGC	1 cut(s)	446
Hin1I	GRCGYC	1 cut(s)	444
Hin1II	CATG	5 cut(s)	27, 87, 113, 169, 643
Hin6I	GCGC	1 cut(s)	444
HinP1I	GCGC	1 cut(s)	444
HinfI	GANTC	5 cut(s)	486, 511, 571, 791, 797
HpaII	CCGG	1 cut(s)	746
Hpy166II	GTNNAC	3 cut(s)	392, 547, 570
Hpy188I	TCNGA	4 cut(s)	466, 616, 796, 802
Hpy188III	TCNNGA	1 cut(s)	290
Hpy8I	GTNNAC	3 cut(s)	392, 547, 570
HpyAV	CCTTC	4 cut(s)	310, 467, 648, 703
HpyCH4III	ACNGT	3 cut(s)	162, 172, 386
HpyCH4IV	ACGT	4 cut(s)	206, 343, 394, 634
HpyCH4V	TGCA	4 cut(s)	27, 165, 192, 505
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 79, 426
HpyF3I	CTNAG	6 cut(s)	44, 78, 116, 615, 629, 675
HpySE526I	ACGT	4 cut(s)	206, 343, 394, 634
Hsp92I	GRCGYC	1 cut(s)	444
Hsp92II	CATG	5 cut(s)	27, 87, 113, 169, 643
HspAI	GCGC	1 cut(s)	444
KasI	GGCGCC	1 cut(s)	443
Kzo9I	GATC	3 cut(s)	448, 461, 779
LweI	GCATC	3 cut(s)	15, 179, 209
MaeI	CTAG	3 cut(s)	33, 515, 578
MaeII	ACGT	4 cut(s)	206, 343, 394, 634
MaeIII	GTNAC	1 cut(s)	260
MalI	GATC	3 cut(s)	450, 463, 781
MboI	GATC	3 cut(s)	448, 461, 779
MboII	GAAGA	5 cut(s)	56, 190, 325, 386, 479
MflI	RGATCY	1 cut(s)	779
MluCI	AATT	2 cut(s)	307, 365
Mly113I	GGCGCC	1 cut(s)	444
MlyI	GAGTC	1 cut(s)	565
MmeI	TCCRAC	1 cut(s)	684
MnlI	CCTC	6 cut(s)	135, 262, 325, 425, 556, 602
MroXI	GAANNNNTTC	1 cut(s)	365
MspI	CCGG	1 cut(s)	746
MspR9I	CCNGG	2 cut(s)	280, 746
MvaI	CCWGG	1 cut(s)	280
MwoI	GCNNNNNNNGC	3 cut(s)	33, 79, 426
NarI	GGCGCC	1 cut(s)	444
NciI	CCSGG	1 cut(s)	746
NdeI	CATATG	1 cut(s)	38
NdeII	GATC	3 cut(s)	448, 461, 779
NheI	GCTAGC	1 cut(s)	577
NlaIII	CATG	5 cut(s)	27, 87, 113, 169, 643
NlaIV	GGNNCC	1 cut(s)	445
NmeAIII	GCCGAG	1 cut(s)	553
NmuCI	GTSAC	1 cut(s)	260
NspI	RCATGY	1 cut(s)	113
PciI	ACATGT	1 cut(s)	109
PcsI	WCGNNNNNNNCGW	1 cut(s)	631
PdmI	GAANNNNTTC	1 cut(s)	365
PfeI	GAWTC	4 cut(s)	486, 511, 791, 797
PflMI	CCANNNNNTGG	1 cut(s)	458
PkrI	GCNGC	5 cut(s)	148, 199, 416, 419, 443
PleI	GAGTC	1 cut(s)	565
PluTI	GGCGCC	1 cut(s)	447
PmaCI	CACGTG	1 cut(s)	395
PmlI	CACGTG	1 cut(s)	395
PpsI	GAGTC	1 cut(s)	565
Ppu21I	YACGTR	1 cut(s)	395
PscI	ACATGT	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	278
PspCI	CACGTG	1 cut(s)	395
PspGI	CCWGG	1 cut(s)	278
PspN4I	GGNNCC	1 cut(s)	445
PstNI	CAGNNNCTG	3 cut(s)	614, 670, 800
PsuI	RGATCY	1 cut(s)	779
RsaI	GTAC	4 cut(s)	391, 644, 698, 724
RsaNI	GTAC	4 cut(s)	390, 643, 697, 723
SatI	GCNGC	5 cut(s)	147, 198, 415, 418, 442
Sau3AI	GATC	3 cut(s)	448, 461, 779
ScaI	AGTACT	1 cut(s)	698
SchI	GAGTC	1 cut(s)	565
ScrFI	CCNGG	2 cut(s)	280, 746
SfaNI	GCATC	3 cut(s)	15, 179, 209
SfoI	GGCGCC	1 cut(s)	445
SmlI	CTYRAG	1 cut(s)	593
SmoI	CTYRAG	1 cut(s)	593
Sse9I	AATT	2 cut(s)	307, 365
SsiI	CCGC	6 cut(s)	147, 197, 414, 417, 429, 441
SspDI	GGCGCC	1 cut(s)	443
SspMI	CTAG	3 cut(s)	33, 515, 578
StyD4I	CCNGG	2 cut(s)	278, 744
TaaI	ACNGT	3 cut(s)	162, 172, 386
TaiI	ACGT	4 cut(s)	209, 346, 397, 637
TaqI	TCGA	1 cut(s)	555
TasI	AATT	2 cut(s)	307, 365
TatI	WGTACW	2 cut(s)	642, 696
TauI	GCSGC	5 cut(s)	149, 200, 417, 420, 444
TfiI	GAWTC	4 cut(s)	486, 511, 791, 797
TscAI	CASTG	1 cut(s)	391
TseFI	GTSAC	1 cut(s)	260
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	5 cut(s)	12, 378, 387, 486, 510
TspGWI	ACGGA	1 cut(s)	89
TspRI	CASTG	1 cut(s)	391
Van91I	CCANNNNNTGG	1 cut(s)	458
XapI	RAATTY	1 cut(s)	365
XceI	RCATGY	1 cut(s)	113
XmnI	GAANNNNTTC	1 cut(s)	365
XspI	CTAG	3 cut(s)	33, 515, 578
ZrmI	AGTACT	1 cut(s)	698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.