Rh2AG257900

glycine-rich protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0003207
Physical Location & Seq
Reverse (-)
29515297 .. 29521605
6309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG257900.1

Sequence Viewer

Length: 741 bp
ATGAGCATTTTGCAGACTACTTCTTACCAACCTAGCCTCTGTGTCAGAAACACTTCTCAATCACTGCACCTCTCTTCTAAGCCATATATTTTACCAGTCCATGCTAAACTTCCCCTTCAAAATCCTTCCCTGGCAATCCGTAATGCATCAAATCAGCAACAGTGCATGCCCATATTAAAGAACCAGAAATGGAGGGCTGCATCTACATACCAACATTCTTCACTTGTCTGCTTATTGGGCAGCAAGGGAAAGCATGGAAGTGATAACGAGGGCTCCCCATGGAAAGCTCTTGAGAATGCAATGGGTAATCTGAAGAAGGAATCATCGATAGAGGATGTATTACGTAAGCAGATTGAAAAGAAAGAGTTCTATAAAGACAAAGACAGTGCAACACGTGGTGGTGGCCGTGGCCGTGGTGGTGGCGGCGGTGCTGGTGGCAGCGGGGGTGGTGGTGCAGAGGGCTCTAGTGGATCAGATGAAGGCTTTGCCGGAATCATTGATGAAACATTTCAAGTGATTCTAGCTACTATTGGGTTTATTTTTCTGTATGTTTACATCATCAGTGGCGAGGAGTGGACTCGTTTAGCGAAAGACTACCTCAAGTTTCTCTTTAAAGGATCCGAGAGTGCTCGTTTGAAGCGTGCCATGGACAAATGGGGAAGGTTCTACCAGAAGCTGACTGAGAAGTTGTATGACCAGGTTGGAGAAGGCCATACTCAGTACCCCAACTTGGTGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

246

Amino Acids

26.95

Weight (kDa)

9.37

Isoelectric Point (pI)

43.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 423, 426, 441
AclWI GGATC 3 cut(s) 478, 612, 625
AcoI YGGCCR 2 cut(s) 403, 409
AcuI CTGAAG 1 cut(s) 332
AcvI CACGTG 1 cut(s) 395
AdeI CACNNNGTG 1 cut(s) 398
AfaI GTAC 1 cut(s) 722
AfiI CCNNNNNNNGG 1 cut(s) 730
AflIII ACRYGT 1 cut(s) 392
AgsI TTSAA 4 cut(s) 119, 356, 512, 637
AjnI CCWGG 2 cut(s) 129, 696
AluBI AGCT 3 cut(s) 287, 524, 676
AluI AGCT 3 cut(s) 287, 524, 676
Alw21I GWGCWC 1 cut(s) 631
AlwI GGATC 3 cut(s) 478, 612, 625
AlwNI CAGNNNCTG 1 cut(s) 676
AoxI GGCC 3 cut(s) 403, 409, 709
ApeKI GCWGC 3 cut(s) 197, 240, 438
Asp700I GAANNNNTTC 3 cut(s) 52, 365, 507
BamHI GGATCC 1 cut(s) 617
BanII GRGCYC 2 cut(s) 275, 464
BbrPI CACGTG 1 cut(s) 395
Bbv12I GWGCWC 1 cut(s) 631
BbvI GCAGC 3 cut(s) 184, 252, 450
BceAI ACGGC 2 cut(s) 390, 396
BciT130I CCWGG 2 cut(s) 131, 698
BfaI CTAG 3 cut(s) 33, 465, 521
BisI GCNGC 4 cut(s) 198, 241, 424, 439
BlsI GCNGC 4 cut(s) 199, 242, 425, 440
Bme1390I CCNGG 2 cut(s) 131, 698
BmiI GGNNCC 2 cut(s) 274, 619
BmrFI CCNGG 2 cut(s) 131, 698
BmsI GCATC 2 cut(s) 155, 209
BpuEI CTTGAG 2 cut(s) 311, 584
Bsa29I ATCGAT 1 cut(s) 326
BsaAI YACGTR 2 cut(s) 344, 395
BsaJI CCNNGG 5 cut(s) 129, 278, 406, 412, 645
BsaXI ACNNNNNCTCC 2 cut(s) 257, 287
Bsc4I CCNNNNNNNGG 1 cut(s) 730
Bse1I ACTGG 1 cut(s) 95
Bse3DI GCAATG 1 cut(s) 306
BseBI CCWGG 2 cut(s) 131, 698
BseCI ATCGAT 1 cut(s) 326
BseDI CCNNGG 5 cut(s) 129, 278, 406, 412, 645
BseGI GGATG 1 cut(s) 340
BseLI CCNNNNNNNGG 1 cut(s) 730
BseMI GCAATG 1 cut(s) 306
BseMII CTCAG 2 cut(s) 672, 731
BseNI ACTGG 1 cut(s) 95
BseRI GAGGAG 1 cut(s) 584
BseXI GCAGC 3 cut(s) 184, 252, 450
BsgI GTGCAG 2 cut(s) 50, 474
BshFI GGCC 3 cut(s) 405, 411, 711
BshVI ATCGAT 1 cut(s) 326
BsiHKAI GWGCWC 1 cut(s) 631
BsiSI CCGG 1 cut(s) 489
BslI CCNNNNNNNGG 1 cut(s) 730
BsmI GAATGC 1 cut(s) 301
BsnI GGCC 3 cut(s) 405, 411, 711
Bsp1286I GDGCHC 3 cut(s) 275, 464, 631
Bsp143I GATC 2 cut(s) 470, 617
Bsp19I CCATGG 2 cut(s) 278, 645
BspACI CCGC 3 cut(s) 423, 426, 441
BspANI GGCC 3 cut(s) 405, 411, 711
BspCNI CTCAG 2 cut(s) 673, 730
BspDI ATCGAT 1 cut(s) 326
BspLI GGNNCC 2 cut(s) 274, 619
BspPI GGATC 3 cut(s) 478, 612, 625
BsrDI GCAATG 1 cut(s) 306
BsrI ACTGG 1 cut(s) 95
BssECI CCNNGG 5 cut(s) 129, 278, 406, 412, 645
BssMI GATC 2 cut(s) 470, 617
BssT1I CCWWGG 2 cut(s) 278, 645
Bst2UI CCWGG 2 cut(s) 131, 698
Bst4CI ACNGT 2 cut(s) 162, 386
Bst6I CTCTTC 1 cut(s) 79
BstBAI YACGTR 2 cut(s) 344, 395
BstC8I GCNNGC 2 cut(s) 167, 642
BstDEI CTNAG 3 cut(s) 78, 681, 717
BstDSI CCRYGG 4 cut(s) 278, 406, 412, 645
BstF5I GGATG 1 cut(s) 340
BstKTI GATC 2 cut(s) 473, 620
BstMBI GATC 2 cut(s) 470, 617
BstMWI GCNNNNNNNGC 1 cut(s) 237
BstNI CCWGG 2 cut(s) 131, 698
BstNSI RCATGY 1 cut(s) 169
BstSCI CCNGG 2 cut(s) 129, 696
BstSNI TACGTA 1 cut(s) 344
BstV1I GCAGC 3 cut(s) 184, 252, 450
BstX2I RGATCY 1 cut(s) 617
BstXI CCANNNNNNTGG 1 cut(s) 733
BstYI RGATCY 1 cut(s) 617
Bsu15I ATCGAT 1 cut(s) 326
BsuRI GGCC 3 cut(s) 405, 411, 711
BsuTUI ATCGAT 1 cut(s) 326
BtgI CCRYGG 4 cut(s) 278, 406, 412, 645
BtsCI GGATG 1 cut(s) 340
BtsI GCAGTG 1 cut(s) 62
BtsIMutI CAGTG 4 cut(s) 62, 167, 391, 568
Cac8I GCNNGC 2 cut(s) 167, 642
CaiI CAGNNNCTG 1 cut(s) 676
ClaI ATCGAT 1 cut(s) 326
CsiI ACCWGGT 1 cut(s) 696
Csp6I GTAC 1 cut(s) 721
CviAII CATG 5 cut(s) 101, 166, 254, 279, 646
CviQI GTAC 1 cut(s) 721
DdeI CTNAG 3 cut(s) 78, 681, 717
DpnI GATC 2 cut(s) 472, 619
DpnII GATC 2 cut(s) 470, 617
DraI TTTAAA 1 cut(s) 613
DraIII CACNNNGTG 1 cut(s) 398
EaeI YGGCCR 2 cut(s) 403, 409
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
Eco105I TACGTA 1 cut(s) 344
Eco130I CCWWGG 2 cut(s) 278, 645
Eco24I GRGCYC 2 cut(s) 275, 464
Eco57I CTGAAG 1 cut(s) 332
Eco72I CACGTG 1 cut(s) 395
EcoRII CCWGG 2 cut(s) 129, 696
EcoT14I CCWWGG 2 cut(s) 278, 645
EcoT22I ATGCAT 1 cut(s) 148
EcoT38I GRGCYC 2 cut(s) 275, 464
ErhI CCWWGG 2 cut(s) 278, 645
FaeI CATG 5 cut(s) 104, 169, 257, 282, 649
FalI AAGNNNNNCTT 2 cut(s) 593, 625
FatI CATG 5 cut(s) 100, 165, 253, 278, 645
FauI CCCGC 1 cut(s) 434
Fnu4HI GCNGC 4 cut(s) 198, 241, 424, 439
FokI GGATG 1 cut(s) 347
FriOI GRGCYC 2 cut(s) 275, 464
Fsp4HI GCNGC 4 cut(s) 198, 241, 424, 439
FspBI CTAG 3 cut(s) 33, 465, 521
GluI GCNGC 4 cut(s) 198, 241, 424, 439
HaeIII GGCC 3 cut(s) 405, 411, 711
HapII CCGG 1 cut(s) 489
Hin1II CATG 5 cut(s) 104, 169, 257, 282, 649
HinfI GANTC 4 cut(s) 320, 492, 517, 577
HpaII CCGG 1 cut(s) 489
Hpy166II GTNNAC 2 cut(s) 553, 576
Hpy188I TCNGA 4 cut(s) 47, 312, 475, 622
Hpy188III TCNNGA 1 cut(s) 290
Hpy8I GTNNAC 2 cut(s) 553, 576
HpyAV CCTTC 6 cut(s) 125, 135, 310, 473, 654, 701
HpyCH4III ACNGT 2 cut(s) 162, 386
HpyCH4IV ACGT 2 cut(s) 343, 394
HpyCH4V TGCA 8 cut(s) 13, 67, 146, 165, 200, 299, 389, 455
HpyF10VI GCNNNNNNNGC 1 cut(s) 237
HpyF3I CTNAG 3 cut(s) 78, 681, 717
HpySE526I ACGT 2 cut(s) 343, 394
Hsp92II CATG 5 cut(s) 104, 169, 257, 282, 649
Kzo9I GATC 2 cut(s) 470, 617
LmnI GCTCC 1 cut(s) 278
LpnPI CCDG 9 cut(s) 108, 116, 143, 197, 417, 502, 683, 683, 710
Lsp1109I GCAGC 3 cut(s) 184, 252, 450
LweI GCATC 2 cut(s) 155, 209
MabI ACCWGGT 1 cut(s) 696
MaeI CTAG 3 cut(s) 33, 465, 521
MaeII ACGT 2 cut(s) 343, 394
MalI GATC 2 cut(s) 472, 619
MboI GATC 2 cut(s) 470, 617
MboII GAAGA 3 cut(s) 66, 210, 325
MflI RGATCY 1 cut(s) 617
MhlI GDGCHC 3 cut(s) 275, 464, 631
MlyI GAGTC 1 cut(s) 571
MmeI TCCRAC 1 cut(s) 682
MnlI CCTC 8 cut(s) 47, 80, 186, 262, 325, 451, 562, 608
Mph1103I ATGCAT 1 cut(s) 148
MroXI GAANNNNTTC 3 cut(s) 52, 365, 507
MseI TTAA 2 cut(s) 176, 612
MslI CAYNNNNRTG 1 cut(s) 258
MspA1I CMGCKG 1 cut(s) 441
MspI CCGG 1 cut(s) 489
MspR9I CCNGG 2 cut(s) 131, 698
Mva1269I GAATGC 1 cut(s) 301
MvaI CCWGG 2 cut(s) 131, 698
MwoI GCNNNNNNNGC 1 cut(s) 237
NcoI CCATGG 2 cut(s) 278, 645
NdeII GATC 2 cut(s) 470, 617
NlaIII CATG 5 cut(s) 104, 169, 257, 282, 649
NlaIV GGNNCC 2 cut(s) 274, 619
NsiI ATGCAT 1 cut(s) 148
NspI RCATGY 1 cut(s) 169
PaeI GCATGC 1 cut(s) 169
PcsI WCGNNNNNNNCGW 1 cut(s) 637
PctI GAATGC 1 cut(s) 301
PdmI GAANNNNTTC 3 cut(s) 52, 365, 507
PfeI GAWTC 3 cut(s) 320, 492, 517
PkrI GCNGC 4 cut(s) 199, 242, 425, 440
PleI GAGTC 1 cut(s) 571
PmaCI CACGTG 1 cut(s) 395
PmlI CACGTG 1 cut(s) 395
PpsI GAGTC 1 cut(s) 571
Ppu21I YACGTR 2 cut(s) 344, 395
Psp6I CCWGG 2 cut(s) 129, 696
PspCI CACGTG 1 cut(s) 395
PspGI CCWGG 2 cut(s) 129, 696
PspN4I GGNNCC 2 cut(s) 274, 619
PstNI CAGNNNCTG 1 cut(s) 676
PsuI RGATCY 1 cut(s) 617
RsaI GTAC 1 cut(s) 722
RsaNI GTAC 1 cut(s) 721
RseI CAYNNNNRTG 1 cut(s) 258
SaqAI TTAA 2 cut(s) 176, 612
SatI GCNGC 4 cut(s) 198, 241, 424, 439
Sau3AI GATC 2 cut(s) 470, 617
SchI GAGTC 1 cut(s) 571
ScrFI CCNGG 2 cut(s) 131, 698
SduI GDGCHC 3 cut(s) 275, 464, 631
SexAI ACCWGGT 1 cut(s) 696
SfaNI GCATC 2 cut(s) 155, 209
SmiMI CAYNNNNRTG 1 cut(s) 258
SmlI CTYRAG 2 cut(s) 290, 599
SmoI CTYRAG 2 cut(s) 290, 599
SnaBI TACGTA 1 cut(s) 344
SphI GCATGC 1 cut(s) 169
SsiI CCGC 3 cut(s) 423, 426, 441
SspMI CTAG 3 cut(s) 33, 465, 521
StyD4I CCNGG 2 cut(s) 129, 696
StyI CCWWGG 2 cut(s) 278, 645
TaaI ACNGT 2 cut(s) 162, 386
TaiI ACGT 2 cut(s) 346, 397
TaqI TCGA 1 cut(s) 326
TauI GCSGC 1 cut(s) 426
TfiI GAWTC 3 cut(s) 320, 492, 517
Tru1I TTAA 2 cut(s) 176, 612
Tru9I TTAA 2 cut(s) 176, 612
TscAI CASTG 4 cut(s) 69, 167, 391, 568
TseI GCWGC 3 cut(s) 197, 240, 438
TspDTI ATGAA 2 cut(s) 492, 516
TspGWI ACGGA 1 cut(s) 128
TspRI CASTG 4 cut(s) 69, 167, 391, 568
XceI RCATGY 1 cut(s) 169
XmnI GAANNNNTTC 3 cut(s) 52, 365, 507
XspI CTAG 3 cut(s) 33, 465, 521
Zsp2I ATGCAT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.