RchiOBHm_Chr2g0115921

glycine-rich protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003207
Physical Location & Seq
Reverse (-)
28117576 .. 28119133
1558 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48903

Sequence Viewer

Length: 741 bp
ATGAGCATTTTGCAGACTACTTCTTACCAACCTAGTCTCTGTGTCAGAAACACTTCTCAATCACTGCACCTCTCTTCTAAGCCATATATTTTACCAGTCCATGCTAAACTTCCCCTTCAAAATCCTTCCCTGGCAATCCGTAATGCATCAAATCAGCAACAGTGCATGCCCATATTAAAGAACCAGAAATGCAGGGCTGCATCTACATACCAACATTCTTCACTTGTCTGCTTATTGGGCGGCAAGGGAAAGCATGGAAGTGATAACGAGGGCTCCCCATGGAAAGCTCTTGAGAATGCAATGGGTAATCTGAAGAAGGAATCATCGATAGAGGATGTATTACGTAAGCAGATTGAAAAGAAAGAGTTCTATAAAGACAAAGACAGTGCAACACGTGGTGGTGGCCGTGGACGTGGTGGTGGCGGCGGTGCTGGTGGCCGCGGGGGTGGTGGTGCAGAGGGCTCTAGTGGATCAGATGAAGGCTTTGCCGGAATCATTGATGAAACATTTCAAGTGATTCTAGCTACTATTGGGTTTATTTTTCTGTATGTTTACATCATCAGTGGCGAGGAGTGGGCTCGTTTAGCGAAAGACTACCTCAAGTTTCTCTTTAAAGGATCCGAGAGTGCTCGTTTGAAGCGTGCCATGGACAAATGGGGAAGGTTCTACCAGAAGCTGACTGAGAAGTTGTATGACCAGGTTGGAGAAGGCCATACTCAGTACCCCAACTTGGTGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

246

Amino Acids

26.87

Weight (kDa)

9.39

Isoelectric Point (pI)

43.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 441
AciI CCGC 5 cut(s) 240, 423, 426, 439, 441
AclWI GGATC 3 cut(s) 478, 612, 625
AcoI YGGCCR 2 cut(s) 403, 436
AcuI CTGAAG 1 cut(s) 332
AcvI CACGTG 1 cut(s) 395
AdeI CACNNNGTG 1 cut(s) 398
AfaI GTAC 1 cut(s) 722
AfiI CCNNNNNNNGG 1 cut(s) 730
AflIII ACRYGT 1 cut(s) 392
AgsI TTSAA 4 cut(s) 119, 356, 512, 637
AjiI CACGTC 1 cut(s) 413
AjnI CCWGG 2 cut(s) 129, 696
AluBI AGCT 3 cut(s) 287, 524, 676
AluI AGCT 3 cut(s) 287, 524, 676
Alw21I GWGCWC 1 cut(s) 631
Alw26I GTCTC 1 cut(s) 41
AlwI GGATC 3 cut(s) 478, 612, 625
AlwNI CAGNNNCTG 1 cut(s) 676
AoxI GGCC 3 cut(s) 403, 436, 709
ApeKI GCWGC 1 cut(s) 197
Asp700I GAANNNNTTC 3 cut(s) 52, 365, 507
BamHI GGATCC 1 cut(s) 617
BanII GRGCYC 3 cut(s) 275, 464, 580
BbrPI CACGTG 1 cut(s) 395
Bbv12I GWGCWC 1 cut(s) 631
BbvI GCAGC 1 cut(s) 184
BceAI ACGGC 1 cut(s) 390
BciT130I CCWGG 2 cut(s) 131, 698
BcoDI GTCTC 1 cut(s) 41
BfaI CTAG 3 cut(s) 33, 465, 521
BisI GCNGC 4 cut(s) 198, 241, 424, 439
BlsI GCNGC 4 cut(s) 199, 242, 425, 440
Bme1390I CCNGG 2 cut(s) 131, 698
BmgBI CACGTC 1 cut(s) 413
BmiI GGNNCC 2 cut(s) 274, 619
BmrFI CCNGG 2 cut(s) 131, 698
BmsI GCATC 2 cut(s) 155, 209
BpuEI CTTGAG 2 cut(s) 311, 584
Bsa29I ATCGAT 1 cut(s) 326
BsaAI YACGTR 2 cut(s) 344, 395
BsaJI CCNNGG 5 cut(s) 129, 278, 406, 439, 645
BsaXI ACNNNNNCTCC 2 cut(s) 257, 287
Bsc4I CCNNNNNNNGG 1 cut(s) 730
Bse1I ACTGG 1 cut(s) 95
Bse3DI GCAATG 1 cut(s) 306
BseBI CCWGG 2 cut(s) 131, 698
BseCI ATCGAT 1 cut(s) 326
BseDI CCNNGG 5 cut(s) 129, 278, 406, 439, 645
BseGI GGATG 1 cut(s) 340
BseLI CCNNNNNNNGG 1 cut(s) 730
BseMI GCAATG 1 cut(s) 306
BseMII CTCAG 2 cut(s) 672, 731
BseNI ACTGG 1 cut(s) 95
BseRI GAGGAG 1 cut(s) 584
BseXI GCAGC 1 cut(s) 184
BsgI GTGCAG 2 cut(s) 50, 474
Bsh1236I CGCG 1 cut(s) 441
BshFI GGCC 3 cut(s) 405, 438, 711
BshVI ATCGAT 1 cut(s) 326
BsiHKAI GWGCWC 1 cut(s) 631
BsiSI CCGG 1 cut(s) 489
BslI CCNNNNNNNGG 1 cut(s) 730
BsmAI GTCTC 1 cut(s) 41
BsmI GAATGC 1 cut(s) 301
BsnI GGCC 3 cut(s) 405, 438, 711
Bsp1286I GDGCHC 4 cut(s) 275, 464, 580, 631
Bsp143I GATC 2 cut(s) 470, 617
Bsp19I CCATGG 2 cut(s) 278, 645
BspACI CCGC 5 cut(s) 240, 423, 426, 439, 441
BspANI GGCC 3 cut(s) 405, 438, 711
BspCNI CTCAG 2 cut(s) 673, 730
BspDI ATCGAT 1 cut(s) 326
BspFNI CGCG 1 cut(s) 441
BspLI GGNNCC 2 cut(s) 274, 619
BspPI GGATC 3 cut(s) 478, 612, 625
BsrDI GCAATG 1 cut(s) 306
BsrI ACTGG 1 cut(s) 95
BssECI CCNNGG 5 cut(s) 129, 278, 406, 439, 645
BssMI GATC 2 cut(s) 470, 617
BssT1I CCWWGG 2 cut(s) 278, 645
Bst2UI CCWGG 2 cut(s) 131, 698
Bst4CI ACNGT 2 cut(s) 162, 386
Bst6I CTCTTC 1 cut(s) 79
BstBAI YACGTR 2 cut(s) 344, 395
BstC8I GCNNGC 2 cut(s) 167, 642
BstDEI CTNAG 3 cut(s) 78, 681, 717
BstDSI CCRYGG 4 cut(s) 278, 406, 439, 645
BstF5I GGATG 1 cut(s) 340
BstFNI CGCG 1 cut(s) 441
BstKTI GATC 2 cut(s) 473, 620
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 2 cut(s) 470, 617
BstMWI GCNNNNNNNGC 2 cut(s) 237, 584
BstNI CCWGG 2 cut(s) 131, 698
BstNSI RCATGY 1 cut(s) 169
BstSCI CCNGG 2 cut(s) 129, 696
BstSNI TACGTA 1 cut(s) 344
BstUI CGCG 1 cut(s) 441
BstV1I GCAGC 1 cut(s) 184
BstX2I RGATCY 1 cut(s) 617
BstXI CCANNNNNNTGG 1 cut(s) 733
BstYI RGATCY 1 cut(s) 617
Bsu15I ATCGAT 1 cut(s) 326
BsuRI GGCC 3 cut(s) 405, 438, 711
BsuTUI ATCGAT 1 cut(s) 326
BtgI CCRYGG 4 cut(s) 278, 406, 439, 645
BtrI CACGTC 1 cut(s) 413
BtsCI GGATG 1 cut(s) 340
BtsI GCAGTG 1 cut(s) 62
BtsIMutI CAGTG 4 cut(s) 62, 167, 391, 568
Cac8I GCNNGC 2 cut(s) 167, 642
CaiI CAGNNNCTG 1 cut(s) 676
Cfr42I CCGCGG 1 cut(s) 442
ClaI ATCGAT 1 cut(s) 326
CsiI ACCWGGT 1 cut(s) 696
Csp6I GTAC 1 cut(s) 721
CviAII CATG 5 cut(s) 101, 166, 254, 279, 646
CviQI GTAC 1 cut(s) 721
DdeI CTNAG 3 cut(s) 78, 681, 717
DpnI GATC 2 cut(s) 472, 619
DpnII GATC 2 cut(s) 470, 617
DraI TTTAAA 1 cut(s) 613
DraIII CACNNNGTG 1 cut(s) 398
EaeI YGGCCR 2 cut(s) 403, 436
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
Eco105I TACGTA 1 cut(s) 344
Eco130I CCWWGG 2 cut(s) 278, 645
Eco24I GRGCYC 3 cut(s) 275, 464, 580
Eco57I CTGAAG 1 cut(s) 332
Eco72I CACGTG 1 cut(s) 395
EcoRII CCWGG 2 cut(s) 129, 696
EcoT14I CCWWGG 2 cut(s) 278, 645
EcoT22I ATGCAT 1 cut(s) 148
EcoT38I GRGCYC 3 cut(s) 275, 464, 580
ErhI CCWWGG 2 cut(s) 278, 645
FaeI CATG 5 cut(s) 104, 169, 257, 282, 649
FalI AAGNNNNNCTT 2 cut(s) 593, 625
FatI CATG 5 cut(s) 100, 165, 253, 278, 645
FauI CCCGC 1 cut(s) 434
Fnu4HI GCNGC 4 cut(s) 198, 241, 424, 439
FokI GGATG 1 cut(s) 347
FriOI GRGCYC 3 cut(s) 275, 464, 580
Fsp4HI GCNGC 4 cut(s) 198, 241, 424, 439
FspBI CTAG 3 cut(s) 33, 465, 521
GluI GCNGC 4 cut(s) 198, 241, 424, 439
HaeIII GGCC 3 cut(s) 405, 438, 711
HapII CCGG 1 cut(s) 489
Hin1II CATG 5 cut(s) 104, 169, 257, 282, 649
HinfI GANTC 3 cut(s) 320, 492, 517
HpaII CCGG 1 cut(s) 489
Hpy166II GTNNAC 2 cut(s) 410, 553
Hpy188I TCNGA 4 cut(s) 47, 312, 475, 622
Hpy188III TCNNGA 1 cut(s) 290
Hpy8I GTNNAC 2 cut(s) 410, 553
HpyAV CCTTC 6 cut(s) 125, 135, 310, 473, 654, 701
HpyCH4III ACNGT 2 cut(s) 162, 386
HpyCH4IV ACGT 3 cut(s) 343, 394, 412
HpyCH4V TGCA 9 cut(s) 13, 67, 146, 165, 192, 200, 299, 389, 455
HpyF10VI GCNNNNNNNGC 2 cut(s) 237, 584
HpyF3I CTNAG 3 cut(s) 78, 681, 717
HpySE526I ACGT 3 cut(s) 343, 394, 412
Hsp92II CATG 5 cut(s) 104, 169, 257, 282, 649
KspI CCGCGG 1 cut(s) 442
Kzo9I GATC 2 cut(s) 470, 617
LmnI GCTCC 1 cut(s) 278
Lsp1109I GCAGC 1 cut(s) 184
LweI GCATC 2 cut(s) 155, 209
MabI ACCWGGT 1 cut(s) 696
MaeI CTAG 3 cut(s) 33, 465, 521
MaeII ACGT 3 cut(s) 343, 394, 412
MalI GATC 2 cut(s) 472, 619
MboI GATC 2 cut(s) 470, 617
MboII GAAGA 3 cut(s) 66, 210, 325
MflI RGATCY 1 cut(s) 617
MhlI GDGCHC 4 cut(s) 275, 464, 580, 631
MmeI TCCRAC 1 cut(s) 682
MnlI CCTC 6 cut(s) 80, 262, 325, 451, 562, 608
Mph1103I ATGCAT 1 cut(s) 148
MroXI GAANNNNTTC 3 cut(s) 52, 365, 507
MseI TTAA 2 cut(s) 176, 612
MslI CAYNNNNRTG 1 cut(s) 258
MspA1I CMGCKG 1 cut(s) 441
MspI CCGG 1 cut(s) 489
MspR9I CCNGG 2 cut(s) 131, 698
Mva1269I GAATGC 1 cut(s) 301
MvaI CCWGG 2 cut(s) 131, 698
MvnI CGCG 1 cut(s) 441
MwoI GCNNNNNNNGC 2 cut(s) 237, 584
NcoI CCATGG 2 cut(s) 278, 645
NdeII GATC 2 cut(s) 470, 617
NlaIII CATG 5 cut(s) 104, 169, 257, 282, 649
NlaIV GGNNCC 2 cut(s) 274, 619
NsiI ATGCAT 1 cut(s) 148
NspI RCATGY 1 cut(s) 169
PaeI GCATGC 1 cut(s) 169
PcsI WCGNNNNNNNCGW 1 cut(s) 637
PctI GAATGC 1 cut(s) 301
PdmI GAANNNNTTC 3 cut(s) 52, 365, 507
PfeI GAWTC 3 cut(s) 320, 492, 517
PkrI GCNGC 4 cut(s) 199, 242, 425, 440
PmaCI CACGTG 1 cut(s) 395
PmlI CACGTG 1 cut(s) 395
Ppu21I YACGTR 2 cut(s) 344, 395
Psp6I CCWGG 2 cut(s) 129, 696
PspCI CACGTG 1 cut(s) 395
PspGI CCWGG 2 cut(s) 129, 696
PspN4I GGNNCC 2 cut(s) 274, 619
PstNI CAGNNNCTG 1 cut(s) 676
PsuI RGATCY 1 cut(s) 617
RsaI GTAC 1 cut(s) 722
RsaNI GTAC 1 cut(s) 721
RseI CAYNNNNRTG 1 cut(s) 258
SacII CCGCGG 1 cut(s) 442
SaqAI TTAA 2 cut(s) 176, 612
SatI GCNGC 4 cut(s) 198, 241, 424, 439
Sau3AI GATC 2 cut(s) 470, 617
ScrFI CCNGG 2 cut(s) 131, 698
SduI GDGCHC 4 cut(s) 275, 464, 580, 631
SexAI ACCWGGT 1 cut(s) 696
SfaNI GCATC 2 cut(s) 155, 209
Sfr303I CCGCGG 1 cut(s) 442
SgrBI CCGCGG 1 cut(s) 442
SmiMI CAYNNNNRTG 1 cut(s) 258
SmlI CTYRAG 2 cut(s) 290, 599
SmoI CTYRAG 2 cut(s) 290, 599
SnaBI TACGTA 1 cut(s) 344
SphI GCATGC 1 cut(s) 169
SsiI CCGC 5 cut(s) 240, 423, 426, 439, 441
SspMI CTAG 3 cut(s) 33, 465, 521
StyD4I CCNGG 2 cut(s) 129, 696
StyI CCWWGG 2 cut(s) 278, 645
TaaI ACNGT 2 cut(s) 162, 386
TaiI ACGT 3 cut(s) 346, 397, 415
TaqI TCGA 1 cut(s) 326
TauI GCSGC 3 cut(s) 243, 426, 441
TfiI GAWTC 3 cut(s) 320, 492, 517
Tru1I TTAA 2 cut(s) 176, 612
Tru9I TTAA 2 cut(s) 176, 612
TscAI CASTG 4 cut(s) 69, 167, 391, 568
TseI GCWGC 1 cut(s) 197
TspDTI ATGAA 2 cut(s) 492, 516
TspGWI ACGGA 1 cut(s) 128
TspRI CASTG 4 cut(s) 69, 167, 391, 568
XceI RCATGY 1 cut(s) 169
XmnI GAANNNNTTC 3 cut(s) 52, 365, 507
XspI CTAG 3 cut(s) 33, 465, 521
Zsp2I ATGCAT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.