Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003207

Physical Location & Seq

Genomic Coordinates Reverse (-)

28364286 .. 28365678

Gene Structure 1393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG264500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGCCCATATTAAAGAACCAGAAATGCAGGGCTGCATCTACATACCAACATTCTTCACTTGTCTGCTTATTGGGCGGCAAGGGAAAGCATGGAAGTGATAACGAGGGCTCCCCATGGAAAGCTCTTGAGAATGCAATGGGTAATCTGAAGAAGGAATCATCGATAGAGGATGTATTACGTAAGCAGATTGAAAAGAAAGAGTTCTATAAAGACAAAGACAGTGCAACACGTGGTGGTGGCCGTGGACGTGGTGGTGGCGGCGGTGCTGGTGGCCGCGGGGGTGGTGGTGCAGAGGGCTCTAGTGGATCAGATGAAGGCTTTGCCGGAATCATTGATGAAACATTTCAAGTGATTCTAGCTACTATTGGGTTTATTTTTCTGTATGTTTACATCATCAGTGGCGAGGAGTGGGCTCGTTTAGCGAAAGACTACCTCAAGTTTCTCTTTAAAGGATCCGAGAGTGCTCGTTTGAAGCGTGCCATGGACAAATGGGGAAGGTTCTACCAGAAGCTGACTGAGAAGTTGTATGACCAGGTTGGAGAAGGCCATACTCAGTACCCCAACTTGGTGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

20.78

Weight (kDa)

9.21

Isoelectric Point (pI)

33.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43630 AT3G59640 AT3G59640
fragaria_vesca	FvH4_1g21910 FvH4_1g21910 FvH4_4g10550 FvH4_4g10550 FvH4_4g10550
malus_domestica	MD08G1231200.v1.1 MD10G1168700.v1.1 MD15G1424100.v1.1
prunus_persica	Prupe.1G205800_v2.0.a1 Prupe.1G570000_v2.0.a1
pyrus_communis	pycom08g20100 pycom15g37610
rosa_chinensis	RchiOBHm_Chr2g0115921 RchiOBHm_Chr4g0406201
rosa_laevigata	RLG00000008790 RLG00000018223
rosa_multiflora	Rmu_sc0012210.1_g000002 Rmu_sc0041989.1_g000001 Rmu_ssc0000197.1_g000008
rosa_roxburghii	Rroxscaffold_2G00127700 Rroxscaffold_2G00128510 Rroxscaffold_5G00350910
rosa_rugosa	Rorug02G0201300 Rorug04G0066100
rosa_samantha	Rh2AG257900 Rh2BG269000 Rh2CG264500 Rh2DG266200 Rh4AG136200 Rh4BG133600 Rh4CG144400 Rh4DG131100
rosa_wichuraiana	Rw2G020230 Rw4G011170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	276
AciI	CCGC	5 cut(s)	75, 258, 261, 274, 276
AclWI	GGATC	3 cut(s)	313, 447, 460
AcoI	YGGCCR	2 cut(s)	238, 271
AcuI	CTGAAG	1 cut(s)	167
AcvI	CACGTG	1 cut(s)	230
AdeI	CACNNNGTG	1 cut(s)	233
AfaI	GTAC	1 cut(s)	557
AfiI	CCNNNNNNNGG	1 cut(s)	565
AflIII	ACRYGT	1 cut(s)	227
AgsI	TTSAA	3 cut(s)	191, 347, 472
AjiI	CACGTC	1 cut(s)	248
AjnI	CCWGG	1 cut(s)	531
AluBI	AGCT	3 cut(s)	122, 359, 511
AluI	AGCT	3 cut(s)	122, 359, 511
Alw21I	GWGCWC	1 cut(s)	466
AlwI	GGATC	3 cut(s)	313, 447, 460
AlwNI	CAGNNNCTG	1 cut(s)	511
AoxI	GGCC	3 cut(s)	238, 271, 544
ApeKI	GCWGC	1 cut(s)	32
Asp700I	GAANNNNTTC	2 cut(s)	200, 342
BamHI	GGATCC	1 cut(s)	452
BanII	GRGCYC	3 cut(s)	110, 299, 415
BbrPI	CACGTG	1 cut(s)	230
Bbv12I	GWGCWC	1 cut(s)	466
BbvI	GCAGC	1 cut(s)	19
BceAI	ACGGC	1 cut(s)	225
BciT130I	CCWGG	1 cut(s)	533
BfaI	CTAG	2 cut(s)	300, 356
BisI	GCNGC	4 cut(s)	33, 76, 259, 274
BlsI	GCNGC	4 cut(s)	34, 77, 260, 275
Bme1390I	CCNGG	1 cut(s)	533
BmgBI	CACGTC	1 cut(s)	248
BmiI	GGNNCC	2 cut(s)	109, 454
BmrFI	CCNGG	1 cut(s)	533
BmsI	GCATC	1 cut(s)	44
BpuEI	CTTGAG	2 cut(s)	146, 419
Bsa29I	ATCGAT	1 cut(s)	161
BsaAI	YACGTR	2 cut(s)	179, 230
BsaJI	CCNNGG	4 cut(s)	113, 241, 274, 480
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	1 cut(s)	565
Bse3DI	GCAATG	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	533
BseCI	ATCGAT	1 cut(s)	161
BseDI	CCNNGG	4 cut(s)	113, 241, 274, 480
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	1 cut(s)	565
BseMI	GCAATG	1 cut(s)	141
BseMII	CTCAG	2 cut(s)	507, 566
BseRI	GAGGAG	1 cut(s)	419
BseXI	GCAGC	1 cut(s)	19
BsgI	GTGCAG	1 cut(s)	309
Bsh1236I	CGCG	1 cut(s)	276
BshFI	GGCC	3 cut(s)	240, 273, 546
BshVI	ATCGAT	1 cut(s)	161
BsiHKAI	GWGCWC	1 cut(s)	466
BsiSI	CCGG	1 cut(s)	324
BslI	CCNNNNNNNGG	1 cut(s)	565
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	3 cut(s)	240, 273, 546
Bsp1286I	GDGCHC	4 cut(s)	110, 299, 415, 466
Bsp143I	GATC	2 cut(s)	305, 452
Bsp19I	CCATGG	2 cut(s)	113, 480
BspACI	CCGC	5 cut(s)	75, 258, 261, 274, 276
BspANI	GGCC	3 cut(s)	240, 273, 546
BspCNI	CTCAG	2 cut(s)	508, 565
BspDI	ATCGAT	1 cut(s)	161
BspFNI	CGCG	1 cut(s)	276
BspLI	GGNNCC	2 cut(s)	109, 454
BspPI	GGATC	3 cut(s)	313, 447, 460
BsrDI	GCAATG	1 cut(s)	141
BssECI	CCNNGG	4 cut(s)	113, 241, 274, 480
BssMI	GATC	2 cut(s)	305, 452
BssT1I	CCWWGG	2 cut(s)	113, 480
Bst2UI	CCWGG	1 cut(s)	533
Bst4CI	ACNGT	1 cut(s)	221
BstBAI	YACGTR	2 cut(s)	179, 230
BstC8I	GCNNGC	1 cut(s)	477
BstDEI	CTNAG	2 cut(s)	516, 552
BstDSI	CCRYGG	4 cut(s)	113, 241, 274, 480
BstF5I	GGATG	1 cut(s)	175
BstFNI	CGCG	1 cut(s)	276
BstKTI	GATC	2 cut(s)	308, 455
BstMBI	GATC	2 cut(s)	305, 452
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 419
BstNI	CCWGG	1 cut(s)	533
BstSCI	CCNGG	1 cut(s)	531
BstSNI	TACGTA	1 cut(s)	179
BstUI	CGCG	1 cut(s)	276
BstV1I	GCAGC	1 cut(s)	19
BstX2I	RGATCY	1 cut(s)	452
BstXI	CCANNNNNNTGG	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	452
Bsu15I	ATCGAT	1 cut(s)	161
BsuRI	GGCC	3 cut(s)	240, 273, 546
BsuTUI	ATCGAT	1 cut(s)	161
BtgI	CCRYGG	4 cut(s)	113, 241, 274, 480
BtrI	CACGTC	1 cut(s)	248
BtsCI	GGATG	1 cut(s)	175
BtsIMutI	CAGTG	2 cut(s)	226, 403
Cac8I	GCNNGC	1 cut(s)	477
CaiI	CAGNNNCTG	1 cut(s)	511
Cfr42I	CCGCGG	1 cut(s)	277
ClaI	ATCGAT	1 cut(s)	161
CsiI	ACCWGGT	1 cut(s)	531
Csp6I	GTAC	1 cut(s)	556
CviAII	CATG	3 cut(s)	89, 114, 481
CviQI	GTAC	1 cut(s)	556
DdeI	CTNAG	2 cut(s)	516, 552
DpnI	GATC	2 cut(s)	307, 454
DpnII	GATC	2 cut(s)	305, 452
DraI	TTTAAA	1 cut(s)	448
DraIII	CACNNNGTG	1 cut(s)	233
EaeI	YGGCCR	2 cut(s)	238, 271
Eco105I	TACGTA	1 cut(s)	179
Eco130I	CCWWGG	2 cut(s)	113, 480
Eco24I	GRGCYC	3 cut(s)	110, 299, 415
Eco57I	CTGAAG	1 cut(s)	167
Eco72I	CACGTG	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	531
EcoT14I	CCWWGG	2 cut(s)	113, 480
EcoT38I	GRGCYC	3 cut(s)	110, 299, 415
ErhI	CCWWGG	2 cut(s)	113, 480
FaeI	CATG	3 cut(s)	92, 117, 484
FaiI	YATR	9 cut(s)	8, 43, 90, 115, 207, 384, 482, 528, 549
FalI	AAGNNNNNCTT	2 cut(s)	428, 460
FatI	CATG	3 cut(s)	88, 113, 480
FauI	CCCGC	1 cut(s)	269
Fnu4HI	GCNGC	4 cut(s)	33, 76, 259, 274
FokI	GGATG	1 cut(s)	182
FriOI	GRGCYC	3 cut(s)	110, 299, 415
Fsp4HI	GCNGC	4 cut(s)	33, 76, 259, 274
FspBI	CTAG	2 cut(s)	300, 356
GluI	GCNGC	4 cut(s)	33, 76, 259, 274
HaeIII	GGCC	3 cut(s)	240, 273, 546
HapII	CCGG	1 cut(s)	324
Hin1II	CATG	3 cut(s)	92, 117, 484
HinfI	GANTC	3 cut(s)	155, 327, 352
HpaII	CCGG	1 cut(s)	324
Hpy166II	GTNNAC	2 cut(s)	245, 388
Hpy188I	TCNGA	3 cut(s)	147, 310, 457
Hpy188III	TCNNGA	1 cut(s)	125
Hpy8I	GTNNAC	2 cut(s)	245, 388
HpyAV	CCTTC	4 cut(s)	145, 308, 489, 536
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4IV	ACGT	3 cut(s)	178, 229, 247
HpyCH4V	TGCA	5 cut(s)	27, 35, 134, 224, 290
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 419
HpyF3I	CTNAG	2 cut(s)	516, 552
HpySE526I	ACGT	3 cut(s)	178, 229, 247
Hsp92II	CATG	3 cut(s)	92, 117, 484
KspI	CCGCGG	1 cut(s)	277
Kzo9I	GATC	2 cut(s)	305, 452
LmnI	GCTCC	1 cut(s)	113
LpnPI	CCDG	7 cut(s)	13, 32, 252, 337, 518, 518, 545
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	1 cut(s)	44
MabI	ACCWGGT	1 cut(s)	531
MaeI	CTAG	2 cut(s)	300, 356
MaeII	ACGT	3 cut(s)	178, 229, 247
MalI	GATC	2 cut(s)	307, 454
MboI	GATC	2 cut(s)	305, 452
MboII	GAAGA	2 cut(s)	45, 160
MflI	RGATCY	1 cut(s)	452
MhlI	GDGCHC	4 cut(s)	110, 299, 415, 466
MmeI	TCCRAC	1 cut(s)	517
MnlI	CCTC	5 cut(s)	97, 160, 286, 397, 443
MroXI	GAANNNNTTC	2 cut(s)	200, 342
MseI	TTAA	2 cut(s)	11, 447
MslI	CAYNNNNRTG	1 cut(s)	93
MspA1I	CMGCKG	1 cut(s)	276
MspI	CCGG	1 cut(s)	324
MspR9I	CCNGG	1 cut(s)	533
Mva1269I	GAATGC	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	533
MvnI	CGCG	1 cut(s)	276
MwoI	GCNNNNNNNGC	2 cut(s)	72, 419
NcoI	CCATGG	2 cut(s)	113, 480
NdeII	GATC	2 cut(s)	305, 452
NlaIII	CATG	3 cut(s)	92, 117, 484
NlaIV	GGNNCC	2 cut(s)	109, 454
PcsI	WCGNNNNNNNCGW	1 cut(s)	472
PctI	GAATGC	1 cut(s)	136
PdmI	GAANNNNTTC	2 cut(s)	200, 342
PfeI	GAWTC	3 cut(s)	155, 327, 352
PkrI	GCNGC	4 cut(s)	34, 77, 260, 275
PmaCI	CACGTG	1 cut(s)	230
PmlI	CACGTG	1 cut(s)	230
Ppu21I	YACGTR	2 cut(s)	179, 230
Psp6I	CCWGG	1 cut(s)	531
PspCI	CACGTG	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	531
PspN4I	GGNNCC	2 cut(s)	109, 454
PstNI	CAGNNNCTG	1 cut(s)	511
PsuI	RGATCY	1 cut(s)	452
RsaI	GTAC	1 cut(s)	557
RsaNI	GTAC	1 cut(s)	556
RseI	CAYNNNNRTG	1 cut(s)	93
SacII	CCGCGG	1 cut(s)	277
SaqAI	TTAA	2 cut(s)	11, 447
SatI	GCNGC	4 cut(s)	33, 76, 259, 274
Sau3AI	GATC	2 cut(s)	305, 452
ScrFI	CCNGG	1 cut(s)	533
SduI	GDGCHC	4 cut(s)	110, 299, 415, 466
SetI	ASST	9 cut(s)	124, 181, 232, 250, 361, 435, 500, 513, 537
SexAI	ACCWGGT	1 cut(s)	531
SfaNI	GCATC	1 cut(s)	44
Sfr303I	CCGCGG	1 cut(s)	277
SgrBI	CCGCGG	1 cut(s)	277
SmiMI	CAYNNNNRTG	1 cut(s)	93
SmlI	CTYRAG	2 cut(s)	125, 434
SmoI	CTYRAG	2 cut(s)	125, 434
SnaBI	TACGTA	1 cut(s)	179
SsiI	CCGC	5 cut(s)	75, 258, 261, 274, 276
SspMI	CTAG	2 cut(s)	300, 356
StyD4I	CCNGG	1 cut(s)	531
StyI	CCWWGG	2 cut(s)	113, 480
TaaI	ACNGT	1 cut(s)	221
TaiI	ACGT	3 cut(s)	181, 232, 250
TaqI	TCGA	1 cut(s)	161
TauI	GCSGC	3 cut(s)	78, 261, 276
TfiI	GAWTC	3 cut(s)	155, 327, 352
Tru1I	TTAA	2 cut(s)	11, 447
Tru9I	TTAA	2 cut(s)	11, 447
TscAI	CASTG	2 cut(s)	226, 403
TseI	GCWGC	1 cut(s)	32
TspDTI	ATGAA	2 cut(s)	327, 351
TspRI	CASTG	2 cut(s)	226, 403
XmnI	GAANNNNTTC	2 cut(s)	200, 342
XspI	CTAG	2 cut(s)	300, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.