Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0003207

Physical Location & Seq

Genomic Coordinates Reverse (-)

26504404 .. 26507273

Gene Structure 2870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G011170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGAGCACTGTGCAGATTAGTTCATGCAATCCTTGCATCCGTCTCAGGAACAGCTCTCAATCTCTTCGTCTCCCTTCTAAGCCATATATTTTACCAATTCATGCTAAACATGCTCTTCTTAGAAATCCTTTGGTAGCAACGTGTAATGCATCAATTCAGCAACGGTGCATGACCGTATTGAAGAACCAGCGATGCAGGGCGGTATCTACATACCAACAATCATTCCCTGTCTGCTTATTGGGTGGAAAAGGAAAAAATGGAAGTGATGACGAGGCTTCCCCATGGAAATCTCTGGAGAAAGCAATGAGCAATTTGAAGAAGGACAGTTCAATAGAGGATGTATTACGTCAGCAGATAGAAAAGAAAGAATTCTATGAAGACAAAGACAGTGGTACACCTGGTGGTGGCGGTGGCAGCGGTGGCGGTGGCGGTGGTGCGGATGGATCTGGTGGGTCAGAAGATGAAGGCTTTGCTGGAATCATTGATGAAACCTTGCAAGTGATTCTAGCAACCATTGGATTTATATTTCTGTATGTTTACATCATCACTGGTGAGGAGTGGGCTCGGCTAGCAAAGGACTACCTCAAGTTTCTCTTTTCAGGGTCTGAGAGTGTTCGTCTAAAACGTGCCATGTACCAATGGGGAAGGTTCTACCAGAAGCTGACTGAGAAGAAGGTGTATGATAAGTTCTGGTTGGAGAAGGCCATAATCAGTACCCCAACTTGGTGGGATAGCCCTGCCAAGTATCACTACGTAACTGAGAGCATTAGATCTCATTTAGAATCAAATTCTGATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

266

Amino Acids

29.63

Weight (kDa)

8.62

Isoelectric Point (pI)

58.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43630 AT3G59640 AT3G59640
fragaria_vesca	FvH4_1g21910 FvH4_1g21910 FvH4_4g10550 FvH4_4g10550 FvH4_4g10550
malus_domestica	MD08G1231200.v1.1 MD10G1168700.v1.1 MD15G1424100.v1.1
prunus_persica	Prupe.1G205800_v2.0.a1 Prupe.1G570000_v2.0.a1
pyrus_communis	pycom08g20100 pycom15g37610
rosa_chinensis	RchiOBHm_Chr2g0115921 RchiOBHm_Chr4g0406201
rosa_laevigata	RLG00000008790 RLG00000018223
rosa_multiflora	Rmu_sc0012210.1_g000002 Rmu_sc0041989.1_g000001 Rmu_ssc0000197.1_g000008
rosa_roxburghii	Rroxscaffold_2G00127700 Rroxscaffold_2G00128510 Rroxscaffold_5G00350910
rosa_rugosa	Rorug02G0201300 Rorug04G0066100
rosa_samantha	Rh2AG257900 Rh2BG269000 Rh2CG264500 Rh2DG266200 Rh4AG136200 Rh4BG133600 Rh4CG144400 Rh4DG131100
rosa_wichuraiana	Rw2G020230 Rw4G011170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	200, 408, 417, 423, 429, 437
AclWI	GGATC	1 cut(s)	451
AcsI	RAATTY	2 cut(s)	368, 787
AdeI	CACNNNGTG	1 cut(s)	401
AfaI	GTAC	3 cut(s)	394, 635, 715
AfiI	CCNNNNNNNGG	2 cut(s)	404, 723
AflIII	ACRYGT	1 cut(s)	140
AgsI	TTSAA	3 cut(s)	181, 316, 330
AjnI	CCWGG	1 cut(s)	397
AluBI	AGCT	2 cut(s)	54, 661
AluI	AGCT	2 cut(s)	54, 661
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	2 cut(s)	47, 74
AlwI	GGATC	1 cut(s)	451
AlwNI	CAGNNNCTG	2 cut(s)	605, 661
AoxI	GGCC	1 cut(s)	702
ApeKI	GCWGC	1 cut(s)	414
ApoI	RAATTY	2 cut(s)	368, 787
Asp700I	GAANNNNTTC	1 cut(s)	368
AsuHPI	GGTGA	1 cut(s)	563
AsuNHI	GCTAGC	1 cut(s)	568
BanII	GRGCYC	1 cut(s)	565
BbsI	GAAGAC	1 cut(s)	384
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	426
BccI	CCATC	1 cut(s)	434
BciT130I	CCWGG	1 cut(s)	399
BcoDI	GTCTC	2 cut(s)	47, 74
BfaI	CTAG	2 cut(s)	506, 569
BglII	AGATCT	1 cut(s)	770
BisI	GCNGC	1 cut(s)	415
BlsI	GCNGC	1 cut(s)	416
Bme1390I	CCNGG	1 cut(s)	399
BmrFI	CCNGG	1 cut(s)	399
BmsI	GCATC	3 cut(s)	45, 158, 182
BmtI	GCTAGC	1 cut(s)	572
BpiI	GAAGAC	1 cut(s)	384
BpmI	CTGGAG	1 cut(s)	314
BpuEI	CTTGAG	1 cut(s)	569
BsaAI	YACGTR	1 cut(s)	754
BsaJI	CCNNGG	1 cut(s)	281
Bsc4I	CCNNNNNNNGG	2 cut(s)	404, 723
Bse1I	ACTGG	1 cut(s)	553
Bse3DI	GCAATG	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	281
BseGI	GGATG	3 cut(s)	36, 343, 445
BseLI	CCNNNNNNNGG	2 cut(s)	404, 723
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	4 cut(s)	58, 597, 657, 750
BseNI	ACTGG	1 cut(s)	553
BseRI	GAGGAG	1 cut(s)	569
BseXI	GCAGC	1 cut(s)	426
BsgI	GTGCAG	1 cut(s)	32
BshFI	GGCC	1 cut(s)	704
BsiHKAI	GWGCWC	1 cut(s)	8
BslI	CCNNNNNNNGG	2 cut(s)	404, 723
BsmAI	GTCTC	2 cut(s)	47, 74
BsmBI	CGTCTC	2 cut(s)	47, 74
BsnI	GGCC	1 cut(s)	704
Bsp1286I	GDGCHC	2 cut(s)	8, 565
Bsp143I	GATC	2 cut(s)	443, 770
Bsp19I	CCATGG	1 cut(s)	281
BspACI	CCGC	6 cut(s)	200, 408, 417, 423, 429, 437
BspANI	GGCC	1 cut(s)	704
BspCNI	CTCAG	4 cut(s)	57, 598, 658, 751
BspOI	GCTAGC	1 cut(s)	572
BspPI	GGATC	1 cut(s)	451
BspQI	GCTCTTC	1 cut(s)	120
BsrDI	GCAATG	1 cut(s)	309
BsrI	ACTGG	1 cut(s)	553
BssECI	CCNNGG	1 cut(s)	281
BssMI	GATC	2 cut(s)	443, 770
BssT1I	CCWWGG	1 cut(s)	281
Bst2UI	CCWGG	1 cut(s)	399
Bst4CI	ACNGT	5 cut(s)	10, 165, 175, 326, 389
Bst6I	CTCTTC	2 cut(s)	69, 120
BstAPI	GCANNNNNTGC	1 cut(s)	33
BstBAI	YACGTR	1 cut(s)	754
BstC8I	GCNNGC	1 cut(s)	570
BstDEI	CTNAG	6 cut(s)	44, 78, 119, 606, 666, 759
BstDSI	CCRYGG	1 cut(s)	281
BstF5I	GGATG	3 cut(s)	36, 343, 445
BstKTI	GATC	2 cut(s)	446, 773
BstMAI	GTCTC	2 cut(s)	47, 74
BstMBI	GATC	2 cut(s)	443, 770
BstMWI	GCNNNNNNNGC	5 cut(s)	33, 110, 414, 420, 569
BstNI	CCWGG	1 cut(s)	399
BstNSI	RCATGY	1 cut(s)	113
BstSCI	CCNGG	1 cut(s)	397
BstSNI	TACGTA	1 cut(s)	754
BstV1I	GCAGC	1 cut(s)	426
BstV2I	GAAGAC	1 cut(s)	384
BstX2I	RGATCY	2 cut(s)	443, 770
BstXI	CCANNNNNNTGG	1 cut(s)	726
BstYI	RGATCY	2 cut(s)	443, 770
BsuRI	GGCC	1 cut(s)	704
BtgI	CCRYGG	1 cut(s)	281
BtgZI	GCGATG	1 cut(s)	205
BtsCI	GGATG	3 cut(s)	36, 343, 445
BtsIMutI	CAGTG	3 cut(s)	6, 394, 546
Cac8I	GCNNGC	1 cut(s)	570
CaiI	CAGNNNCTG	2 cut(s)	605, 661
CsiI	ACCWGGT	1 cut(s)	397
Csp6I	GTAC	3 cut(s)	393, 634, 714
CspCI	CAANNNNNGTGG	2 cut(s)	370, 405
CviAII	CATG	6 cut(s)	24, 101, 110, 169, 282, 631
CviJI	RGCY	9 cut(s)	54, 82, 275, 468, 563, 568, 661, 704, 735
CviKI_1	RGCY	9 cut(s)	54, 82, 275, 468, 563, 568, 661, 704, 735
CviQI	GTAC	3 cut(s)	393, 634, 714
DdeI	CTNAG	6 cut(s)	44, 78, 119, 606, 666, 759
DpnI	GATC	2 cut(s)	445, 772
DpnII	GATC	2 cut(s)	443, 770
DraIII	CACNNNGTG	1 cut(s)	401
Eam1104I	CTCTTC	2 cut(s)	69, 120
EarI	CTCTTC	2 cut(s)	69, 120
Eco105I	TACGTA	1 cut(s)	754
Eco130I	CCWWGG	1 cut(s)	281
Eco24I	GRGCYC	1 cut(s)	565
EcoRI	GAATTC	1 cut(s)	368
EcoRII	CCWGG	1 cut(s)	397
EcoT14I	CCWWGG	1 cut(s)	281
EcoT22I	ATGCAT	1 cut(s)	151
EcoT38I	GRGCYC	1 cut(s)	565
ErhI	CCWWGG	1 cut(s)	281
Esp3I	CGTCTC	2 cut(s)	47, 74
FaeI	CATG	6 cut(s)	27, 104, 113, 172, 285, 634
FalI	AAGNNNNNCTT	2 cut(s)	578, 610
FatI	CATG	6 cut(s)	23, 100, 109, 168, 281, 630
Fnu4HI	GCNGC	1 cut(s)	415
FokI	GGATG	3 cut(s)	23, 350, 452
FriOI	GRGCYC	1 cut(s)	565
Fsp4HI	GCNGC	1 cut(s)	415
FspBI	CTAG	2 cut(s)	506, 569
GluI	GCNGC	1 cut(s)	415
GsuI	CTGGAG	1 cut(s)	314
HaeIII	GGCC	1 cut(s)	704
Hin1II	CATG	6 cut(s)	27, 104, 113, 172, 285, 634
HinfI	GANTC	3 cut(s)	477, 502, 782
HphI	GGTGA	1 cut(s)	563
Hpy166II	GTNNAC	2 cut(s)	395, 538
Hpy188I	TCNGA	3 cut(s)	457, 607, 793
Hpy188III	TCNNGA	2 cut(s)	46, 293
Hpy8I	GTNNAC	2 cut(s)	395, 538
HpyAV	CCTTC	6 cut(s)	84, 313, 458, 639, 667, 694
HpyCH4III	ACNGT	5 cut(s)	10, 165, 175, 326, 389
HpyCH4IV	ACGT	4 cut(s)	140, 346, 625, 753
HpyCH4V	TGCA	7 cut(s)	13, 27, 36, 149, 168, 195, 496
HpyF10VI	GCNNNNNNNGC	5 cut(s)	33, 110, 414, 420, 569
HpyF3I	CTNAG	6 cut(s)	44, 78, 119, 606, 666, 759
HpySE526I	ACGT	4 cut(s)	140, 346, 625, 753
Hsp92II	CATG	6 cut(s)	27, 104, 113, 172, 285, 634
Kzo9I	GATC	2 cut(s)	443, 770
LguI	GCTCTTC	1 cut(s)	120
Lsp1109I	GCAGC	1 cut(s)	426
LweI	GCATC	3 cut(s)	45, 158, 182
MabI	ACCWGGT	1 cut(s)	397
MaeI	CTAG	2 cut(s)	506, 569
MaeII	ACGT	4 cut(s)	140, 346, 625, 753
MaeIII	GTNAC	1 cut(s)	754
MalI	GATC	2 cut(s)	445, 772
MboI	GATC	2 cut(s)	443, 770
MboII	GAAGA	7 cut(s)	56, 107, 193, 328, 389, 470, 682
MflI	RGATCY	2 cut(s)	443, 770
MhlI	GDGCHC	2 cut(s)	8, 565
MluCI	AATT	5 cut(s)	96, 153, 310, 368, 787
MmeI	TCCRAC	1 cut(s)	675
MnlI	CCTC	4 cut(s)	265, 328, 547, 593
Mph1103I	ATGCAT	1 cut(s)	151
MroXI	GAANNNNTTC	1 cut(s)	368
MspA1I	CMGCKG	1 cut(s)	417
MspR9I	CCNGG	1 cut(s)	399
MvaI	CCWGG	1 cut(s)	399
MwoI	GCNNNNNNNGC	5 cut(s)	33, 110, 414, 420, 569
NcoI	CCATGG	1 cut(s)	281
NdeII	GATC	2 cut(s)	443, 770
NheI	GCTAGC	1 cut(s)	568
NlaIII	CATG	6 cut(s)	27, 104, 113, 172, 285, 634
NmeAIII	GCCGAG	1 cut(s)	544
NsiI	ATGCAT	1 cut(s)	151
NspI	RCATGY	1 cut(s)	113
PciSI	GCTCTTC	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	1 cut(s)	622
PdmI	GAANNNNTTC	1 cut(s)	368
PfeI	GAWTC	3 cut(s)	477, 502, 782
PkrI	GCNGC	1 cut(s)	416
Ppu21I	YACGTR	1 cut(s)	754
Psp6I	CCWGG	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	397
PsrI	GAACNNNNNNTAC	2 cut(s)	671, 703
PstNI	CAGNNNCTG	2 cut(s)	605, 661
PsuI	RGATCY	2 cut(s)	443, 770
RsaI	GTAC	3 cut(s)	394, 635, 715
RsaNI	GTAC	3 cut(s)	393, 634, 714
SapI	GCTCTTC	1 cut(s)	120
SatI	GCNGC	1 cut(s)	415
Sau3AI	GATC	2 cut(s)	443, 770
ScrFI	CCNGG	1 cut(s)	399
SduI	GDGCHC	2 cut(s)	8, 565
SexAI	ACCWGGT	1 cut(s)	397
SfaNI	GCATC	3 cut(s)	45, 158, 182
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
SnaBI	TACGTA	1 cut(s)	754
Sse9I	AATT	5 cut(s)	96, 153, 310, 368, 787
SsiI	CCGC	6 cut(s)	200, 408, 417, 423, 429, 437
SspMI	CTAG	2 cut(s)	506, 569
StyD4I	CCNGG	1 cut(s)	397
StyI	CCWWGG	1 cut(s)	281
TaaI	ACNGT	5 cut(s)	10, 165, 175, 326, 389
TaiI	ACGT	4 cut(s)	143, 349, 628, 756
TasI	AATT	5 cut(s)	96, 153, 310, 368, 787
TfiI	GAWTC	3 cut(s)	477, 502, 782
TscAI	CASTG	3 cut(s)	13, 394, 553
TseI	GCWGC	1 cut(s)	414
TspDTI	ATGAA	5 cut(s)	12, 89, 390, 477, 501
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	3 cut(s)	13, 394, 553
XapI	RAATTY	2 cut(s)	368, 787
XceI	RCATGY	1 cut(s)	113
XmnI	GAANNNNTTC	1 cut(s)	368
XspI	CTAG	2 cut(s)	506, 569
Zsp2I	ATGCAT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.