Rroxscaffold_5G00350910

glycine-rich protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0003207
Physical Location & Seq
Reverse (-)
25654636 .. 25657210
2575 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00350910.1

Sequence Viewer

Length: 798 bp
ATGAGCACTGTGCAGATTAGTTCATGCAATCCTAGCATCTGCCTCAGGAACAGCTCTCAATCTCGTTGTCTCCCTTCTAAGCCATATATTTTACCAATTCATGCTAAACATGCTCTTCTTAGAAATCCTTTGGTAGCAACATGTAATGCATCAATTCAGCACCAGTGCATGACCATATTGAAGAACCAGCGATGCAGGGCAGTATCTACATACCAACAATCATTCCCTGTCTGCTTATTGGGTGGAAAAGGAAAAAATGGAAGTGATGACGAGGCTTCCCCATGGAAATCTCTGGAGAAAGCAATGAGCAATTTGAAGAAGGAAAGTTCAATAGAGGATGTATTACGTCAGCAGATAGAAAAGAAAGAATTCTACGAAGACAAAGACAGTGGTACACCTGGCGGCGGTGGCGGCGGTGGCGGTGGCGGTGGTGCAGATGGATCTGGTGGGTCAGAAGATGAAGGCTTTGCTGGAATCATTGATGAAACCTTGCAAGTGATTCTAGCAACCATTGGATTTATATTTCTGTATGTTTACATCATCACTGGTGAGGAGTGGGCTCGGCTAGCAAAGGACTACCTCAAGTTTCTCTTTTCAGGGTCTGAGAGTGTTCGTCTAAAACGTGCCATGTACAAATGGGGAAGGTTCTACCAGAAGCTGACTGAGAAGAAGGTGTATGATAAGTTCTGGTTGGAGAAGGCCATAATCAGTACCCCAACTTGGTGGGATAGCCCTGCCAAGTATCACTACGTAACTGAGAGCATTAGATCTCATTTAGAATCAAATTCTGATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

265

Amino Acids

29.47

Weight (kDa)

8.36

Isoelectric Point (pI)

60.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 402, 405, 411, 414, 420, 426
AclWI GGATC 1 cut(s) 448
AcsI RAATTY 2 cut(s) 368, 784
AfaI GTAC 3 cut(s) 394, 632, 712
AfiI CCNNNNNNNGG 2 cut(s) 404, 720
AflIII ACRYGT 1 cut(s) 140
AgsI TTSAA 3 cut(s) 181, 316, 330
AjnI CCWGG 1 cut(s) 397
AluBI AGCT 2 cut(s) 54, 658
AluI AGCT 2 cut(s) 54, 658
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 74
AlwI GGATC 1 cut(s) 448
AlwNI CAGNNNCTG 2 cut(s) 602, 658
AoxI GGCC 1 cut(s) 699
ApoI RAATTY 2 cut(s) 368, 784
Asp700I GAANNNNTTC 1 cut(s) 368
AsuHPI GGTGA 1 cut(s) 560
AsuNHI GCTAGC 1 cut(s) 565
AxyI CCTNAGG 1 cut(s) 44
BanII GRGCYC 1 cut(s) 562
BbsI GAAGAC 1 cut(s) 384
Bbv12I GWGCWC 1 cut(s) 8
BccI CCATC 1 cut(s) 431
BciT130I CCWGG 1 cut(s) 399
BcoDI GTCTC 1 cut(s) 74
BfaI CTAG 3 cut(s) 33, 503, 566
BglII AGATCT 1 cut(s) 767
BisI GCNGC 2 cut(s) 403, 412
BlsI GCNGC 2 cut(s) 404, 413
Bme1390I CCNGG 1 cut(s) 399
BmrFI CCNGG 1 cut(s) 399
BmsI GCATC 3 cut(s) 45, 158, 182
BmtI GCTAGC 1 cut(s) 569
BpiI GAAGAC 1 cut(s) 384
BpmI CTGGAG 1 cut(s) 314
BpuEI CTTGAG 1 cut(s) 566
BsaAI YACGTR 1 cut(s) 751
BsaJI CCNNGG 1 cut(s) 281
Bsc4I CCNNNNNNNGG 2 cut(s) 404, 720
Bse1I ACTGG 2 cut(s) 163, 550
Bse21I CCTNAGG 1 cut(s) 44
Bse3DI GCAATG 1 cut(s) 309
BseBI CCWGG 1 cut(s) 399
BseDI CCNNGG 1 cut(s) 281
BseGI GGATG 1 cut(s) 343
BseLI CCNNNNNNNGG 2 cut(s) 404, 720
BseMI GCAATG 1 cut(s) 309
BseMII CTCAG 4 cut(s) 58, 594, 654, 747
BseNI ACTGG 2 cut(s) 163, 550
BseRI GAGGAG 1 cut(s) 566
BsgI GTGCAG 2 cut(s) 32, 453
BshFI GGCC 1 cut(s) 701
BsiHKAI GWGCWC 1 cut(s) 8
BslI CCNNNNNNNGG 2 cut(s) 404, 720
BsmAI GTCTC 1 cut(s) 74
BsnI GGCC 1 cut(s) 701
Bsp1286I GDGCHC 2 cut(s) 8, 562
Bsp1407I TGTACA 1 cut(s) 630
Bsp143I GATC 2 cut(s) 440, 767
Bsp19I CCATGG 1 cut(s) 281
BspACI CCGC 6 cut(s) 402, 405, 411, 414, 420, 426
BspANI GGCC 1 cut(s) 701
BspCNI CTCAG 4 cut(s) 57, 595, 655, 748
BspOI GCTAGC 1 cut(s) 569
BspPI GGATC 1 cut(s) 448
BspQI GCTCTTC 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 309
BsrGI TGTACA 1 cut(s) 630
BsrI ACTGG 2 cut(s) 163, 550
BssECI CCNNGG 1 cut(s) 281
BssMI GATC 2 cut(s) 440, 767
BssT1I CCWWGG 1 cut(s) 281
Bst2UI CCWGG 1 cut(s) 399
Bst4CI ACNGT 2 cut(s) 10, 389
Bst6I CTCTTC 1 cut(s) 120
BstAUI TGTACA 1 cut(s) 630
BstBAI YACGTR 1 cut(s) 751
BstC8I GCNNGC 1 cut(s) 567
BstDEI CTNAG 6 cut(s) 44, 78, 119, 603, 663, 756
BstDSI CCRYGG 1 cut(s) 281
BstF5I GGATG 1 cut(s) 343
BstKTI GATC 2 cut(s) 443, 770
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 2 cut(s) 440, 767
BstMWI GCNNNNNNNGC 6 cut(s) 33, 110, 408, 411, 417, 566
BstNI CCWGG 1 cut(s) 399
BstNSI RCATGY 2 cut(s) 113, 144
BstSCI CCNGG 1 cut(s) 397
BstSNI TACGTA 1 cut(s) 751
BstV2I GAAGAC 1 cut(s) 384
BstX2I RGATCY 2 cut(s) 440, 767
BstXI CCANNNNNNTGG 1 cut(s) 723
BstYI RGATCY 2 cut(s) 440, 767
Bsu36I CCTNAGG 1 cut(s) 44
BsuRI GGCC 1 cut(s) 701
BtgI CCRYGG 1 cut(s) 281
BtgZI GCGATG 1 cut(s) 205
BtsCI GGATG 1 cut(s) 343
BtsIMutI CAGTG 4 cut(s) 6, 170, 394, 543
Cac8I GCNNGC 1 cut(s) 567
CaiI CAGNNNCTG 2 cut(s) 602, 658
Csp6I GTAC 3 cut(s) 393, 631, 711
CspCI CAANNNNNGTGG 2 cut(s) 370, 405
CviAII CATG 7 cut(s) 24, 101, 110, 141, 169, 282, 628
CviJI RGCY 9 cut(s) 54, 82, 275, 465, 560, 565, 658, 701, 732
CviKI_1 RGCY 9 cut(s) 54, 82, 275, 465, 560, 565, 658, 701, 732
CviQI GTAC 3 cut(s) 393, 631, 711
DdeI CTNAG 6 cut(s) 44, 78, 119, 603, 663, 756
DpnI GATC 2 cut(s) 442, 769
DpnII GATC 2 cut(s) 440, 767
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco105I TACGTA 1 cut(s) 751
Eco130I CCWWGG 1 cut(s) 281
Eco24I GRGCYC 1 cut(s) 562
Eco81I CCTNAGG 1 cut(s) 44
EcoRI GAATTC 1 cut(s) 368
EcoRII CCWGG 1 cut(s) 397
EcoT14I CCWWGG 1 cut(s) 281
EcoT22I ATGCAT 1 cut(s) 151
EcoT38I GRGCYC 1 cut(s) 562
ErhI CCWWGG 1 cut(s) 281
FaeI CATG 7 cut(s) 27, 104, 113, 144, 172, 285, 631
FalI AAGNNNNNCTT 2 cut(s) 575, 607
FatI CATG 7 cut(s) 23, 100, 109, 140, 168, 281, 627
Fnu4HI GCNGC 2 cut(s) 403, 412
FokI GGATG 1 cut(s) 350
FriOI GRGCYC 1 cut(s) 562
Fsp4HI GCNGC 2 cut(s) 403, 412
FspBI CTAG 3 cut(s) 33, 503, 566
GluI GCNGC 2 cut(s) 403, 412
GsuI CTGGAG 1 cut(s) 314
HaeIII GGCC 1 cut(s) 701
Hin1II CATG 7 cut(s) 27, 104, 113, 144, 172, 285, 631
HinfI GANTC 3 cut(s) 474, 499, 779
HphI GGTGA 1 cut(s) 560
Hpy166II GTNNAC 2 cut(s) 395, 535
Hpy188I TCNGA 3 cut(s) 454, 604, 790
Hpy188III TCNNGA 2 cut(s) 46, 293
Hpy8I GTNNAC 2 cut(s) 395, 535
HpyAV CCTTC 6 cut(s) 84, 313, 455, 636, 664, 691
HpyCH4III ACNGT 2 cut(s) 10, 389
HpyCH4IV ACGT 3 cut(s) 346, 622, 750
HpyCH4V TGCA 7 cut(s) 13, 27, 149, 168, 195, 434, 493
HpyF10VI GCNNNNNNNGC 6 cut(s) 33, 110, 408, 411, 417, 566
HpyF3I CTNAG 6 cut(s) 44, 78, 119, 603, 663, 756
HpySE526I ACGT 3 cut(s) 346, 622, 750
Hsp92II CATG 7 cut(s) 27, 104, 113, 144, 172, 285, 631
Kzo9I GATC 2 cut(s) 440, 767
LguI GCTCTTC 1 cut(s) 120
LweI GCATC 3 cut(s) 45, 158, 182
MaeI CTAG 3 cut(s) 33, 503, 566
MaeII ACGT 3 cut(s) 346, 622, 750
MaeIII GTNAC 1 cut(s) 751
MalI GATC 2 cut(s) 442, 769
MboI GATC 2 cut(s) 440, 767
MboII GAAGA 6 cut(s) 107, 193, 328, 389, 467, 679
MflI RGATCY 2 cut(s) 440, 767
MhlI GDGCHC 2 cut(s) 8, 562
MluCI AATT 5 cut(s) 96, 153, 310, 368, 784
MmeI TCCRAC 1 cut(s) 672
MnlI CCTC 5 cut(s) 53, 265, 328, 544, 590
Mph1103I ATGCAT 1 cut(s) 151
MroXI GAANNNNTTC 1 cut(s) 368
MspR9I CCNGG 1 cut(s) 399
MvaI CCWGG 1 cut(s) 399
MwoI GCNNNNNNNGC 6 cut(s) 33, 110, 408, 411, 417, 566
NcoI CCATGG 1 cut(s) 281
NdeII GATC 2 cut(s) 440, 767
NheI GCTAGC 1 cut(s) 565
NlaIII CATG 7 cut(s) 27, 104, 113, 144, 172, 285, 631
NmeAIII GCCGAG 1 cut(s) 541
NsiI ATGCAT 1 cut(s) 151
NspI RCATGY 2 cut(s) 113, 144
PciI ACATGT 1 cut(s) 140
PciSI GCTCTTC 1 cut(s) 120
PcsI WCGNNNNNNNCGW 1 cut(s) 619
PdmI GAANNNNTTC 1 cut(s) 368
PfeI GAWTC 3 cut(s) 474, 499, 779
PkrI GCNGC 2 cut(s) 404, 413
Ppu21I YACGTR 1 cut(s) 751
PscI ACATGT 1 cut(s) 140
Psp6I CCWGG 1 cut(s) 397
PspGI CCWGG 1 cut(s) 397
PsrI GAACNNNNNNTAC 2 cut(s) 668, 700
PstNI CAGNNNCTG 2 cut(s) 602, 658
PsuI RGATCY 2 cut(s) 440, 767
RsaI GTAC 3 cut(s) 394, 632, 712
RsaNI GTAC 3 cut(s) 393, 631, 711
SapI GCTCTTC 1 cut(s) 120
SatI GCNGC 2 cut(s) 403, 412
Sau3AI GATC 2 cut(s) 440, 767
ScrFI CCNGG 1 cut(s) 399
SduI GDGCHC 2 cut(s) 8, 562
SfaNI GCATC 3 cut(s) 45, 158, 182
SmlI CTYRAG 1 cut(s) 581
SmoI CTYRAG 1 cut(s) 581
SnaBI TACGTA 1 cut(s) 751
Sse9I AATT 5 cut(s) 96, 153, 310, 368, 784
SsiI CCGC 6 cut(s) 402, 405, 411, 414, 420, 426
SspMI CTAG 3 cut(s) 33, 503, 566
StyD4I CCNGG 1 cut(s) 397
StyI CCWWGG 1 cut(s) 281
TaaI ACNGT 2 cut(s) 10, 389
TaiI ACGT 3 cut(s) 349, 625, 753
TasI AATT 5 cut(s) 96, 153, 310, 368, 784
TatI WGTACW 1 cut(s) 630
TauI GCSGC 2 cut(s) 405, 414
TfiI GAWTC 3 cut(s) 474, 499, 779
TscAI CASTG 4 cut(s) 13, 170, 394, 550
TspDTI ATGAA 4 cut(s) 12, 89, 474, 498
TspRI CASTG 4 cut(s) 13, 170, 394, 550
XapI RAATTY 2 cut(s) 368, 784
XceI RCATGY 2 cut(s) 113, 144
XmnI GAANNNNTTC 1 cut(s) 368
XspI CTAG 3 cut(s) 33, 503, 566
Zsp2I ATGCAT 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.