Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003207

Physical Location & Seq

Genomic Coordinates Forward (+)

39237670 .. 39239180

Gene Structure 1511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008790

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGAGCACTGTGCAGATTAGTTCATGCAATCCTTGCATCCGCCTCAGGAACAGCTCTCAATCTCTTCGTCTCCCTTCTAAGCCATATATTTTACCAATTCATGCTAAACATGCTCTTCTTAGAAATCCTTTGGTAGCAACGTGTGATGCATCAATTCAGCAACGGTGCATGACCGTATTGAAGAACCAGCGATGCAGGGCGGTATCTACGTACCAACAATCGTTCCCTGTCTGCTTATTGGGTGGAAAAGGAAAAGATGGAAGTGATGACAAGGCTTCCCCATGGAAATCTCTGGAGAAAGCAATGAGCAATTTGAAGAAGGAAAGTTCAATAGAGGATGTATTACGTCAGCAGATAGAAAAGAAAGAATTCTATGAAGACAAAGACAGTGGTACAGGTGGCGGTGGCGGCGGCGGCGGTGGCGGTGGCGCAGATGGATCTGGTGGATCAGAAGATGAAGGCTTTGCTGGAATCATTGATGAAACCTTGCAAGTGATTCTAGCAACCATTGGATTTATATTTCTGTATGTTTACATCATCACTGGTGAGGAGTGGGCTCGGCTAGCAAAGGACTACCTCAAGTTTCTCTTTTCAGGGTCTGAGAGTGTTCGTCTAAAACGTGCCATGTACAAATGGGGAAGGTTCTACCAGAAGCTGACTGAGAAGAAGGTGTATGATAAGTTCTGGTTGGAGAAGGCCATAATCAGTACCCCAACTTGGTGGGATAGCCCTGCCAAGTATCGCTACGTAACTGAGAGCATTAGATCTCATTTAGAATCAAATTCTGATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

265

Amino Acids

29.48

Weight (kDa)

8.88

Isoelectric Point (pI)

56.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43630 AT3G59640 AT3G59640
fragaria_vesca	FvH4_1g21910 FvH4_1g21910 FvH4_4g10550 FvH4_4g10550 FvH4_4g10550
malus_domestica	MD08G1231200.v1.1 MD10G1168700.v1.1 MD15G1424100.v1.1
prunus_persica	Prupe.1G205800_v2.0.a1 Prupe.1G570000_v2.0.a1
pyrus_communis	pycom08g20100 pycom15g37610
rosa_chinensis	RchiOBHm_Chr2g0115921 RchiOBHm_Chr4g0406201
rosa_laevigata	RLG00000008790 RLG00000018223
rosa_multiflora	Rmu_sc0012210.1_g000002 Rmu_sc0041989.1_g000001 Rmu_ssc0000197.1_g000008
rosa_roxburghii	Rroxscaffold_2G00127700 Rroxscaffold_2G00128510 Rroxscaffold_5G00350910
rosa_rugosa	Rorug02G0201300 Rorug04G0066100
rosa_samantha	Rh2AG257900 Rh2BG269000 Rh2CG264500 Rh2DG266200 Rh4AG136200 Rh4BG133600 Rh4CG144400 Rh4DG131100
rosa_wichuraiana	Rw2G020230 Rw4G011170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	8 cut(s)	40, 200, 402, 408, 411, 414, 417, 423
AclWI	GGATC	2 cut(s)	445, 454
AcsI	RAATTY	2 cut(s)	368, 781
AfaI	GTAC	4 cut(s)	212, 394, 629, 709
AfiI	CCNNNNNNNGG	1 cut(s)	717
AflIII	ACRYGT	1 cut(s)	140
AgsI	TTSAA	3 cut(s)	181, 316, 330
AluBI	AGCT	2 cut(s)	54, 655
AluI	AGCT	2 cut(s)	54, 655
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	2 cut(s)	445, 454
AlwNI	CAGNNNCTG	2 cut(s)	599, 655
AoxI	GGCC	1 cut(s)	696
ApoI	RAATTY	2 cut(s)	368, 781
Asp700I	GAANNNNTTC	1 cut(s)	368
AspLEI	GCGC	1 cut(s)	431
AsuHPI	GGTGA	1 cut(s)	557
AsuNHI	GCTAGC	1 cut(s)	562
AxyI	CCTNAGG	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	559
BbsI	GAAGAC	1 cut(s)	384
Bbv12I	GWGCWC	1 cut(s)	8
BccI	CCATC	2 cut(s)	251, 428
BcoDI	GTCTC	1 cut(s)	74
BfaI	CTAG	2 cut(s)	500, 563
BglII	AGATCT	1 cut(s)	764
BisI	GCNGC	3 cut(s)	409, 412, 415
BlsI	GCNGC	3 cut(s)	410, 413, 416
BmsI	GCATC	4 cut(s)	45, 136, 158, 182
BmtI	GCTAGC	1 cut(s)	566
BpiI	GAAGAC	1 cut(s)	384
BpmI	CTGGAG	1 cut(s)	314
BpuEI	CTTGAG	1 cut(s)	563
BsaAI	YACGTR	2 cut(s)	210, 748
BsaJI	CCNNGG	1 cut(s)	281
Bsc4I	CCNNNNNNNGG	1 cut(s)	717
Bse1I	ACTGG	1 cut(s)	547
Bse21I	CCTNAGG	1 cut(s)	44
Bse3DI	GCAATG	1 cut(s)	309
BseDI	CCNNGG	1 cut(s)	281
BseGI	GGATG	2 cut(s)	36, 343
BseLI	CCNNNNNNNGG	1 cut(s)	717
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	4 cut(s)	58, 591, 651, 744
BseNI	ACTGG	1 cut(s)	547
BseRI	GAGGAG	1 cut(s)	563
BsgI	GTGCAG	1 cut(s)	32
BshFI	GGCC	1 cut(s)	698
BsiHKAI	GWGCWC	1 cut(s)	8
BslI	CCNNNNNNNGG	1 cut(s)	717
BsmAI	GTCTC	1 cut(s)	74
BsmBI	CGTCTC	1 cut(s)	74
BsnI	GGCC	1 cut(s)	698
Bsp1286I	GDGCHC	2 cut(s)	8, 559
Bsp1407I	TGTACA	1 cut(s)	627
Bsp143I	GATC	3 cut(s)	437, 446, 764
Bsp19I	CCATGG	1 cut(s)	281
BspACI	CCGC	8 cut(s)	40, 200, 402, 408, 411, 414, 417, 423
BspANI	GGCC	1 cut(s)	698
BspCNI	CTCAG	4 cut(s)	57, 592, 652, 745
BspOI	GCTAGC	1 cut(s)	566
BspPI	GGATC	2 cut(s)	445, 454
BspQI	GCTCTTC	1 cut(s)	120
BsrDI	GCAATG	1 cut(s)	309
BsrGI	TGTACA	1 cut(s)	627
BsrI	ACTGG	1 cut(s)	547
BssECI	CCNNGG	1 cut(s)	281
BssMI	GATC	3 cut(s)	437, 446, 764
BssT1I	CCWWGG	1 cut(s)	281
Bst4CI	ACNGT	4 cut(s)	10, 165, 175, 389
Bst6I	CTCTTC	2 cut(s)	69, 120
BstAPI	GCANNNNNTGC	1 cut(s)	33
BstAUI	TGTACA	1 cut(s)	627
BstBAI	YACGTR	2 cut(s)	210, 748
BstC8I	GCNNGC	1 cut(s)	564
BstDEI	CTNAG	6 cut(s)	44, 78, 119, 600, 660, 753
BstDSI	CCRYGG	1 cut(s)	281
BstF5I	GGATG	2 cut(s)	36, 343
BstHHI	GCGC	1 cut(s)	431
BstKTI	GATC	3 cut(s)	440, 449, 767
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	3 cut(s)	437, 446, 764
BstMWI	GCNNNNNNNGC	6 cut(s)	33, 110, 408, 414, 420, 563
BstNSI	RCATGY	1 cut(s)	113
BstSNI	TACGTA	2 cut(s)	210, 748
BstV2I	GAAGAC	1 cut(s)	384
BstX2I	RGATCY	2 cut(s)	437, 764
BstXI	CCANNNNNNTGG	1 cut(s)	720
BstYI	RGATCY	2 cut(s)	437, 764
Bsu36I	CCTNAGG	1 cut(s)	44
BsuRI	GGCC	1 cut(s)	698
BtgI	CCRYGG	1 cut(s)	281
BtgZI	GCGATG	1 cut(s)	205
BtsCI	GGATG	2 cut(s)	36, 343
BtsIMutI	CAGTG	3 cut(s)	6, 394, 540
Cac8I	GCNNGC	1 cut(s)	564
CaiI	CAGNNNCTG	2 cut(s)	599, 655
CfoI	GCGC	1 cut(s)	431
Csp6I	GTAC	4 cut(s)	211, 393, 628, 708
CspCI	CAANNNNNGTGG	2 cut(s)	370, 405
CviAII	CATG	6 cut(s)	24, 101, 110, 169, 282, 625
CviJI	RGCY	9 cut(s)	54, 82, 275, 462, 557, 562, 655, 698, 729
CviKI_1	RGCY	9 cut(s)	54, 82, 275, 462, 557, 562, 655, 698, 729
CviQI	GTAC	4 cut(s)	211, 393, 628, 708
DdeI	CTNAG	6 cut(s)	44, 78, 119, 600, 660, 753
DpnI	GATC	3 cut(s)	439, 448, 766
DpnII	GATC	3 cut(s)	437, 446, 764
Eam1104I	CTCTTC	2 cut(s)	69, 120
EarI	CTCTTC	2 cut(s)	69, 120
EciI	GGCGGA	1 cut(s)	29
Eco105I	TACGTA	2 cut(s)	210, 748
Eco130I	CCWWGG	1 cut(s)	281
Eco24I	GRGCYC	1 cut(s)	559
Eco81I	CCTNAGG	1 cut(s)	44
EcoRI	GAATTC	1 cut(s)	368
EcoT14I	CCWWGG	1 cut(s)	281
EcoT22I	ATGCAT	1 cut(s)	151
EcoT38I	GRGCYC	1 cut(s)	559
ErhI	CCWWGG	1 cut(s)	281
Esp3I	CGTCTC	1 cut(s)	74
FaeI	CATG	6 cut(s)	27, 104, 113, 172, 285, 628
FalI	AAGNNNNNCTT	2 cut(s)	572, 604
FatI	CATG	6 cut(s)	23, 100, 109, 168, 281, 624
Fnu4HI	GCNGC	3 cut(s)	409, 412, 415
FokI	GGATG	2 cut(s)	23, 350
FriOI	GRGCYC	1 cut(s)	559
Fsp4HI	GCNGC	3 cut(s)	409, 412, 415
FspBI	CTAG	2 cut(s)	500, 563
GlaI	GCGC	1 cut(s)	430
GluI	GCNGC	3 cut(s)	409, 412, 415
GsuI	CTGGAG	1 cut(s)	314
HaeIII	GGCC	1 cut(s)	698
HhaI	GCGC	1 cut(s)	431
Hin1II	CATG	6 cut(s)	27, 104, 113, 172, 285, 628
Hin6I	GCGC	1 cut(s)	429
HinP1I	GCGC	1 cut(s)	429
HinfI	GANTC	3 cut(s)	471, 496, 776
HphI	GGTGA	1 cut(s)	557
Hpy166II	GTNNAC	1 cut(s)	532
Hpy188I	TCNGA	3 cut(s)	451, 601, 787
Hpy188III	TCNNGA	2 cut(s)	46, 293
Hpy8I	GTNNAC	1 cut(s)	532
HpyAV	CCTTC	6 cut(s)	84, 313, 452, 633, 661, 688
HpyCH4III	ACNGT	4 cut(s)	10, 165, 175, 389
HpyCH4IV	ACGT	5 cut(s)	140, 209, 346, 619, 747
HpyCH4V	TGCA	7 cut(s)	13, 27, 36, 149, 168, 195, 490
HpyF10VI	GCNNNNNNNGC	6 cut(s)	33, 110, 408, 414, 420, 563
HpyF3I	CTNAG	6 cut(s)	44, 78, 119, 600, 660, 753
HpySE526I	ACGT	5 cut(s)	140, 209, 346, 619, 747
Hsp92II	CATG	6 cut(s)	27, 104, 113, 172, 285, 628
HspAI	GCGC	1 cut(s)	429
Kzo9I	GATC	3 cut(s)	437, 446, 764
LguI	GCTCTTC	1 cut(s)	120
LweI	GCATC	4 cut(s)	45, 136, 158, 182
MaeI	CTAG	2 cut(s)	500, 563
MaeII	ACGT	5 cut(s)	140, 209, 346, 619, 747
MaeIII	GTNAC	1 cut(s)	748
MalI	GATC	3 cut(s)	439, 448, 766
MboI	GATC	3 cut(s)	437, 446, 764
MboII	GAAGA	7 cut(s)	56, 107, 193, 328, 389, 464, 676
MflI	RGATCY	2 cut(s)	437, 764
MhlI	GDGCHC	2 cut(s)	8, 559
MluCI	AATT	5 cut(s)	96, 153, 310, 368, 781
MmeI	TCCRAC	1 cut(s)	669
MnlI	CCTC	4 cut(s)	53, 328, 541, 587
Mph1103I	ATGCAT	1 cut(s)	151
MroXI	GAANNNNTTC	1 cut(s)	368
MwoI	GCNNNNNNNGC	6 cut(s)	33, 110, 408, 414, 420, 563
NcoI	CCATGG	1 cut(s)	281
NdeII	GATC	3 cut(s)	437, 446, 764
NheI	GCTAGC	1 cut(s)	562
NlaIII	CATG	6 cut(s)	27, 104, 113, 172, 285, 628
NmeAIII	GCCGAG	1 cut(s)	538
NsiI	ATGCAT	1 cut(s)	151
NspI	RCATGY	1 cut(s)	113
PciSI	GCTCTTC	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	1 cut(s)	616
PdmI	GAANNNNTTC	1 cut(s)	368
PfeI	GAWTC	3 cut(s)	471, 496, 776
PkrI	GCNGC	3 cut(s)	410, 413, 416
Ppu21I	YACGTR	2 cut(s)	210, 748
PsrI	GAACNNNNNNTAC	2 cut(s)	665, 697
PstNI	CAGNNNCTG	2 cut(s)	599, 655
PsuI	RGATCY	2 cut(s)	437, 764
RsaI	GTAC	4 cut(s)	212, 394, 629, 709
RsaNI	GTAC	4 cut(s)	211, 393, 628, 708
SapI	GCTCTTC	1 cut(s)	120
SatI	GCNGC	3 cut(s)	409, 412, 415
Sau3AI	GATC	3 cut(s)	437, 446, 764
SduI	GDGCHC	2 cut(s)	8, 559
SfaNI	GCATC	4 cut(s)	45, 136, 158, 182
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
SnaBI	TACGTA	2 cut(s)	210, 748
Sse9I	AATT	5 cut(s)	96, 153, 310, 368, 781
SsiI	CCGC	8 cut(s)	40, 200, 402, 408, 411, 414, 417, 423
SspMI	CTAG	2 cut(s)	500, 563
StyI	CCWWGG	1 cut(s)	281
TaaI	ACNGT	4 cut(s)	10, 165, 175, 389
TaiI	ACGT	5 cut(s)	143, 212, 349, 622, 750
TasI	AATT	5 cut(s)	96, 153, 310, 368, 781
TatI	WGTACW	1 cut(s)	627
TauI	GCSGC	3 cut(s)	411, 414, 417
TfiI	GAWTC	3 cut(s)	471, 496, 776
TscAI	CASTG	3 cut(s)	13, 394, 547
TspDTI	ATGAA	5 cut(s)	12, 89, 390, 471, 495
TspRI	CASTG	3 cut(s)	13, 394, 547
XapI	RAATTY	2 cut(s)	368, 781
XceI	RCATGY	1 cut(s)	113
XmnI	GAANNNNTTC	1 cut(s)	368
XspI	CTAG	2 cut(s)	500, 563
Zsp2I	ATGCAT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.