Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012210.1

Orthogroup ID

OG0003207

Physical Location & Seq

Genomic Coordinates Forward (+)

1923 .. 4292

Gene Structure 2370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012210.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ctgcaaaaccctttccgagtcgaggtttccgaagataaacaaattcgctgcttctctcagccaccgtcaccggttgggcaacactcgattttagatcttcatgtgacatttacaaggaagctgagaattttattgaggatgagcactgtgcagattagttcatgcaatccttgcatccgtctcaggaacagctctcaatctcttcgtctcccttctaagccatatattttaccaattcatgctaaacatgctcttcttagaaatcctttggtagcaacgtgtaatgcatcaattcagcaacggtgcatgaccgtattgaagaaccagcgatgcagggcggtatctacataccaacaatcattcccggtctgcttattgggtggaaaaggaaaaaatggaagtgatgacgaggcttccccatggaaatctctggagaaagcaatgagcaatttgaagaaggacagttcaatagaggatgtattacgtcagcagatagaaaagaaagaattctatgaagacaaagacagtggtacacctggtggtggtggtggcagcggtggcggtggcggtggtgcagatggatctggtgggtcagaagatgaaggctttgctggaatcattgatgaaaccttgcaagtgattctagcaaccattggatttatatttctgtatgtttacatcatcactggtgaggagtgggctcggctagcaaaggactacctcaagtttctcttttcagggtctgagagtgttcgtctaaaacgtgccatgtaccaatggggaaggttctaccagaagctgactgagaagaaggtgtatgataagttctggttggagaaggccataatcagtaccccaacttggtgggatagccctgccaagtatcactacgtaactgagagcattagatctcatttagaatcaaattctgatgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

312

Amino Acids

35.01

Weight (kDa)

8.94

Isoelectric Point (pI)

60.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43630 AT3G59640 AT3G59640
fragaria_vesca	FvH4_1g21910 FvH4_1g21910 FvH4_4g10550 FvH4_4g10550 FvH4_4g10550
malus_domestica	MD08G1231200.v1.1 MD10G1168700.v1.1 MD15G1424100.v1.1
prunus_persica	Prupe.1G205800_v2.0.a1 Prupe.1G570000_v2.0.a1
pyrus_communis	pycom08g20100 pycom15g37610
rosa_chinensis	RchiOBHm_Chr2g0115921 RchiOBHm_Chr4g0406201
rosa_laevigata	RLG00000008790 RLG00000018223
rosa_multiflora	Rmu_sc0012210.1_g000002 Rmu_sc0041989.1_g000001 Rmu_ssc0000197.1_g000008
rosa_roxburghii	Rroxscaffold_2G00127700 Rroxscaffold_2G00128510 Rroxscaffold_5G00350910
rosa_rugosa	Rorug02G0201300 Rorug04G0066100
rosa_samantha	Rh2AG257900 Rh2BG269000 Rh2CG264500 Rh2DG266200 Rh4AG136200 Rh4BG133600 Rh4CG144400 Rh4DG131100
rosa_wichuraiana	Rw2G020230 Rw4G011170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	338, 555, 561, 567
AclWI	GGATC	1 cut(s)	589
AcsI	RAATTY	4 cut(s)	42, 126, 506, 925
AdeI	CACNNNGTG	1 cut(s)	539
AfaI	GTAC	3 cut(s)	532, 773, 853
AfiI	CCNNNNNNNGG	3 cut(s)	22, 542, 861
AflIII	ACRYGT	1 cut(s)	278
AgeI	ACCGGT	1 cut(s)	70
AgsI	TTSAA	3 cut(s)	319, 454, 468
AjnI	CCWGG	1 cut(s)	535
AluBI	AGCT	3 cut(s)	121, 192, 799
AluI	AGCT	3 cut(s)	121, 192, 799
Alw21I	GWGCWC	1 cut(s)	146
Alw26I	GTCTC	2 cut(s)	185, 212
AlwI	GGATC	1 cut(s)	589
AlwNI	CAGNNNCTG	2 cut(s)	743, 799
AoxI	GGCC	1 cut(s)	840
ApeKI	GCWGC	2 cut(s)	48, 552
ApoI	RAATTY	4 cut(s)	42, 126, 506, 925
AsiGI	ACCGGT	1 cut(s)	70
Asp700I	GAANNNNTTC	1 cut(s)	506
AsuC2I	CCSGG	1 cut(s)	365
AsuHPI	GGTGA	2 cut(s)	60, 701
AsuNHI	GCTAGC	1 cut(s)	706
BanII	GRGCYC	1 cut(s)	703
BbsI	GAAGAC	1 cut(s)	522
Bbv12I	GWGCWC	1 cut(s)	146
BbvI	GCAGC	2 cut(s)	35, 564
BccI	CCATC	1 cut(s)	572
BciT130I	CCWGG	1 cut(s)	537
BcnI	CCSGG	1 cut(s)	365
BcoDI	GTCTC	2 cut(s)	185, 212
BfaI	CTAG	2 cut(s)	644, 707
BglII	AGATCT	2 cut(s)	94, 908
BisI	GCNGC	2 cut(s)	49, 553
BlsI	GCNGC	2 cut(s)	50, 554
Bme1390I	CCNGG	2 cut(s)	365, 537
BmrFI	CCNGG	2 cut(s)	365, 537
BmsI	GCATC	3 cut(s)	183, 296, 320
BmtI	GCTAGC	1 cut(s)	710
BpiI	GAAGAC	1 cut(s)	522
BpmI	CTGGAG	1 cut(s)	452
BpuEI	CTTGAG	1 cut(s)	707
BpuMI	CCSGG	1 cut(s)	365
BsaAI	YACGTR	1 cut(s)	892
BsaJI	CCNNGG	1 cut(s)	419
BsaWI	WCCGGW	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	3 cut(s)	22, 542, 861
Bse118I	RCCGGY	1 cut(s)	70
Bse1I	ACTGG	1 cut(s)	691
Bse3DI	GCAATG	1 cut(s)	447
BseBI	CCWGG	1 cut(s)	537
BseDI	CCNNGG	1 cut(s)	419
BseGI	GGATG	3 cut(s)	144, 174, 481
BseLI	CCNNNNNNNGG	3 cut(s)	22, 542, 861
BseMI	GCAATG	1 cut(s)	447
BseMII	CTCAG	6 cut(s)	71, 113, 196, 735, 795, 888
BseNI	ACTGG	1 cut(s)	691
BseRI	GAGGAG	1 cut(s)	707
BseXI	GCAGC	2 cut(s)	35, 564
BsgI	GTGCAG	2 cut(s)	170, 594
BshFI	GGCC	1 cut(s)	842
BshTI	ACCGGT	1 cut(s)	70
BsiHKAI	GWGCWC	1 cut(s)	146
BsiSI	CCGG	2 cut(s)	71, 365
BslI	CCNNNNNNNGG	3 cut(s)	22, 542, 861
BsmAI	GTCTC	2 cut(s)	185, 212
BsmBI	CGTCTC	2 cut(s)	185, 212
BsnI	GGCC	1 cut(s)	842
Bsp1286I	GDGCHC	2 cut(s)	146, 703
Bsp143I	GATC	3 cut(s)	94, 581, 908
Bsp19I	CCATGG	1 cut(s)	419
BspACI	CCGC	4 cut(s)	338, 555, 561, 567
BspANI	GGCC	1 cut(s)	842
BspCNI	CTCAG	6 cut(s)	70, 114, 195, 736, 796, 889
BspOI	GCTAGC	1 cut(s)	710
BspPI	GGATC	1 cut(s)	589
BspQI	GCTCTTC	1 cut(s)	258
BsrDI	GCAATG	1 cut(s)	447
BsrFI	RCCGGY	1 cut(s)	70
BsrI	ACTGG	1 cut(s)	691
BssAI	RCCGGY	1 cut(s)	70
BssECI	CCNNGG	1 cut(s)	419
BssMI	GATC	3 cut(s)	94, 581, 908
BssT1I	CCWWGG	1 cut(s)	419
Bst2UI	CCWGG	1 cut(s)	537
Bst4CI	ACNGT	6 cut(s)	66, 148, 303, 313, 464, 527
Bst6I	CTCTTC	2 cut(s)	207, 258
BstAPI	GCANNNNNTGC	1 cut(s)	171
BstBAI	YACGTR	1 cut(s)	892
BstC8I	GCNNGC	1 cut(s)	708
BstDEI	CTNAG	8 cut(s)	57, 122, 182, 216, 257, 744, 804, 897
BstDSI	CCRYGG	1 cut(s)	419
BstF5I	GGATG	3 cut(s)	144, 174, 481
BstKTI	GATC	3 cut(s)	97, 584, 911
BstMAI	GTCTC	2 cut(s)	185, 212
BstMBI	GATC	3 cut(s)	94, 581, 908
BstMWI	GCNNNNNNNGC	4 cut(s)	171, 248, 558, 707
BstNI	CCWGG	1 cut(s)	537
BstNSI	RCATGY	1 cut(s)	251
BstSCI	CCNGG	2 cut(s)	363, 535
BstSNI	TACGTA	1 cut(s)	892
BstV1I	GCAGC	2 cut(s)	35, 564
BstV2I	GAAGAC	1 cut(s)	522
BstX2I	RGATCY	3 cut(s)	94, 581, 908
BstXI	CCANNNNNNTGG	1 cut(s)	864
BstYI	RGATCY	3 cut(s)	94, 581, 908
BsuRI	GGCC	1 cut(s)	842
BtgI	CCRYGG	1 cut(s)	419
BtgZI	GCGATG	1 cut(s)	343
BtsCI	GGATG	3 cut(s)	144, 174, 481
BtsIMutI	CAGTG	3 cut(s)	144, 532, 684
Cac8I	GCNNGC	1 cut(s)	708
CaiI	CAGNNNCTG	2 cut(s)	743, 799
Cfr10I	RCCGGY	1 cut(s)	70
CsiI	ACCWGGT	1 cut(s)	535
Csp6I	GTAC	3 cut(s)	531, 772, 852
CspAI	ACCGGT	1 cut(s)	70
CspCI	CAANNNNNGTGG	2 cut(s)	508, 543
CviAII	CATG	7 cut(s)	101, 162, 239, 248, 307, 420, 769
CviQI	GTAC	3 cut(s)	531, 772, 852
DdeI	CTNAG	8 cut(s)	57, 122, 182, 216, 257, 744, 804, 897
DpnI	GATC	3 cut(s)	96, 583, 910
DpnII	GATC	3 cut(s)	94, 581, 908
DraIII	CACNNNGTG	1 cut(s)	539
Eam1104I	CTCTTC	2 cut(s)	207, 258
EarI	CTCTTC	2 cut(s)	207, 258
Eco105I	TACGTA	1 cut(s)	892
Eco130I	CCWWGG	1 cut(s)	419
Eco24I	GRGCYC	1 cut(s)	703
EcoRI	GAATTC	1 cut(s)	506
EcoRII	CCWGG	1 cut(s)	535
EcoT14I	CCWWGG	1 cut(s)	419
EcoT22I	ATGCAT	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	703
ErhI	CCWWGG	1 cut(s)	419
Esp3I	CGTCTC	2 cut(s)	185, 212
FaeI	CATG	7 cut(s)	104, 165, 242, 251, 310, 423, 772
FalI	AAGNNNNNCTT	2 cut(s)	716, 748
FatI	CATG	7 cut(s)	100, 161, 238, 247, 306, 419, 768
Fnu4HI	GCNGC	2 cut(s)	49, 553
FokI	GGATG	3 cut(s)	151, 161, 488
FriOI	GRGCYC	1 cut(s)	703
Fsp4HI	GCNGC	2 cut(s)	49, 553
FspBI	CTAG	2 cut(s)	644, 707
GluI	GCNGC	2 cut(s)	49, 553
GsuI	CTGGAG	1 cut(s)	452
HaeIII	GGCC	1 cut(s)	842
HapII	CCGG	2 cut(s)	71, 365
Hin1II	CATG	7 cut(s)	104, 165, 242, 251, 310, 423, 772
HinfI	GANTC	4 cut(s)	18, 615, 640, 920
HpaII	CCGG	2 cut(s)	71, 365
HphI	GGTGA	2 cut(s)	60, 701
Hpy166II	GTNNAC	2 cut(s)	533, 676
Hpy188I	TCNGA	5 cut(s)	17, 31, 595, 745, 931
Hpy188III	TCNNGA	2 cut(s)	184, 431
Hpy8I	GTNNAC	2 cut(s)	533, 676
HpyAV	CCTTC	6 cut(s)	222, 451, 596, 777, 805, 832
HpyCH4III	ACNGT	6 cut(s)	66, 148, 303, 313, 464, 527
HpyCH4IV	ACGT	4 cut(s)	278, 484, 763, 891
HpyCH4V	TGCA	9 cut(s)	4, 151, 165, 174, 287, 306, 333, 575, 634
HpyF10VI	GCNNNNNNNGC	4 cut(s)	171, 248, 558, 707
HpyF3I	CTNAG	8 cut(s)	57, 122, 182, 216, 257, 744, 804, 897
HpySE526I	ACGT	4 cut(s)	278, 484, 763, 891
Hsp92II	CATG	7 cut(s)	104, 165, 242, 251, 310, 423, 772
Kzo9I	GATC	3 cut(s)	94, 581, 908
LguI	GCTCTTC	1 cut(s)	258
Lsp1109I	GCAGC	2 cut(s)	35, 564
LweI	GCATC	3 cut(s)	183, 296, 320
MabI	ACCWGGT	1 cut(s)	535
MaeI	CTAG	2 cut(s)	644, 707
MaeII	ACGT	4 cut(s)	278, 484, 763, 891
MaeIII	GTNAC	3 cut(s)	66, 103, 892
MalI	GATC	3 cut(s)	96, 583, 910
MboI	GATC	3 cut(s)	94, 581, 908
MboII	GAAGA	9 cut(s)	44, 89, 194, 245, 331, 466, 527, 608, 820
MflI	RGATCY	3 cut(s)	94, 581, 908
MhlI	GDGCHC	2 cut(s)	146, 703
MluCI	AATT	7 cut(s)	42, 126, 234, 291, 448, 506, 925
MlyI	GAGTC	1 cut(s)	27
MmeI	TCCRAC	1 cut(s)	813
MnlI	CCTC	6 cut(s)	16, 129, 403, 466, 685, 731
Mph1103I	ATGCAT	1 cut(s)	289
MroXI	GAANNNNTTC	1 cut(s)	506
MspA1I	CMGCKG	1 cut(s)	555
MspI	CCGG	2 cut(s)	71, 365
MspR9I	CCNGG	2 cut(s)	365, 537
MvaI	CCWGG	1 cut(s)	537
MwoI	GCNNNNNNNGC	4 cut(s)	171, 248, 558, 707
NciI	CCSGG	1 cut(s)	365
NcoI	CCATGG	1 cut(s)	419
NdeII	GATC	3 cut(s)	94, 581, 908
NheI	GCTAGC	1 cut(s)	706
NlaIII	CATG	7 cut(s)	104, 165, 242, 251, 310, 423, 772
NmeAIII	GCCGAG	1 cut(s)	682
NmuCI	GTSAC	2 cut(s)	66, 103
NsiI	ATGCAT	1 cut(s)	289
NspI	RCATGY	1 cut(s)	251
PciSI	GCTCTTC	1 cut(s)	258
PcsI	WCGNNNNNNNCGW	2 cut(s)	27, 760
PdmI	GAANNNNTTC	1 cut(s)	506
PfeI	GAWTC	3 cut(s)	615, 640, 920
PinAI	ACCGGT	1 cut(s)	70
PkrI	GCNGC	2 cut(s)	50, 554
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
Ppu21I	YACGTR	1 cut(s)	892
Psp6I	CCWGG	1 cut(s)	535
PspGI	CCWGG	1 cut(s)	535
PsrI	GAACNNNNNNTAC	2 cut(s)	809, 841
PstNI	CAGNNNCTG	2 cut(s)	743, 799
PsuI	RGATCY	3 cut(s)	94, 581, 908
RsaI	GTAC	3 cut(s)	532, 773, 853
RsaNI	GTAC	3 cut(s)	531, 772, 852
SapI	GCTCTTC	1 cut(s)	258
SatI	GCNGC	2 cut(s)	49, 553
Sau3AI	GATC	3 cut(s)	94, 581, 908
SchI	GAGTC	1 cut(s)	27
ScrFI	CCNGG	2 cut(s)	365, 537
SduI	GDGCHC	2 cut(s)	146, 703
SexAI	ACCWGGT	1 cut(s)	535
SfaNI	GCATC	3 cut(s)	183, 296, 320
SmlI	CTYRAG	1 cut(s)	722
SmoI	CTYRAG	1 cut(s)	722
SnaBI	TACGTA	1 cut(s)	892
Sse9I	AATT	7 cut(s)	42, 126, 234, 291, 448, 506, 925
SsiI	CCGC	4 cut(s)	338, 555, 561, 567
SspMI	CTAG	2 cut(s)	644, 707
StyD4I	CCNGG	2 cut(s)	363, 535
StyI	CCWWGG	1 cut(s)	419
TaaI	ACNGT	6 cut(s)	66, 148, 303, 313, 464, 527
TaiI	ACGT	4 cut(s)	281, 487, 766, 894
TaqI	TCGA	2 cut(s)	21, 86
TasI	AATT	7 cut(s)	42, 126, 234, 291, 448, 506, 925
TfiI	GAWTC	3 cut(s)	615, 640, 920
TscAI	CASTG	3 cut(s)	151, 532, 691
TseFI	GTSAC	2 cut(s)	66, 103
TseI	GCWGC	2 cut(s)	48, 552
Tsp45I	GTSAC	2 cut(s)	66, 103
TspDTI	ATGAA	6 cut(s)	89, 150, 227, 528, 615, 639
TspGWI	ACGGA	1 cut(s)	167
TspRI	CASTG	3 cut(s)	151, 532, 691
XapI	RAATTY	4 cut(s)	42, 126, 506, 925
XceI	RCATGY	1 cut(s)	251
XmnI	GAANNNNTTC	1 cut(s)	506
XspI	CTAG	2 cut(s)	644, 707
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.