Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003207

Physical Location & Seq

Genomic Coordinates Reverse (-)

27116186 .. 27117722

Gene Structure 1537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018223

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGAGCATTTTGCAGACTACTTCCTTCCAACCTAGTCTCTCTGTCAGAAACACTTCTCAATCTCTGCACCTCTCTTCTAAGCCATATATTTTACCAGTCCATGCTAAACTTCCCCTTCAAAGTCCTTACCTGGCAACCCGTAATGCATCAAATCAGCAACAGTGCATGCCCATATTAAAGAACCAGAAATGCAGGGCTGCATCTAGATACCAACATTCTTCACTTGTCTGCTTATTGGGCGGCAAGGGAAAGAATGGAAGTGATAACGAGGGCTCCCCATGGAAAGCTCTTGAGAATGCGATGGGTAATCTGAAGAAGCAATCATCGATAGAGGATGTATTACGTAAGCAGATTGAAAAGAAAGAGTTCTATAAAGACAAAGACAGTGCAATACGTGGTGGTGGCGGTGGCCGTGGGGGTGGCGGCGGTGCTGGTGGCAGCCGGGGTGGTGGTGCAGGGGGCTCTAGTGGATCAGAGGATGAAGGCTTTGCCGGAATCATTGATGAAACATTTCAAGTGATTCTAGCTACTATTGGTTTTATTTTTCTGTATGTTTACATCATCAGTGGCGAGGAGTGGACTCGTTTAGCCAAAGACTACCTCGAGTTTCTCTTTAAAGGATCCGAGAGTGCTCGTTTGAAGCGTGCCATGGACAAATGGGGAAGGTTCTACCAGAAGCTGACTGAGAAGTTGTATGATAAGGTTGGAGAAGGCCATACTCAATACCCCAACTTGGCGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

26.91

Weight (kDa)

9.45

Isoelectric Point (pI)

53.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43630 AT3G59640 AT3G59640
fragaria_vesca	FvH4_1g21910 FvH4_1g21910 FvH4_4g10550 FvH4_4g10550 FvH4_4g10550
malus_domestica	MD08G1231200.v1.1 MD10G1168700.v1.1 MD15G1424100.v1.1
prunus_persica	Prupe.1G205800_v2.0.a1 Prupe.1G570000_v2.0.a1
pyrus_communis	pycom08g20100 pycom15g37610
rosa_chinensis	RchiOBHm_Chr2g0115921 RchiOBHm_Chr4g0406201
rosa_laevigata	RLG00000008790 RLG00000018223
rosa_multiflora	Rmu_sc0012210.1_g000002 Rmu_sc0041989.1_g000001 Rmu_ssc0000197.1_g000008
rosa_roxburghii	Rroxscaffold_2G00127700 Rroxscaffold_2G00128510 Rroxscaffold_5G00350910
rosa_rugosa	Rorug02G0201300 Rorug04G0066100
rosa_samantha	Rh2AG257900 Rh2BG269000 Rh2CG264500 Rh2DG266200 Rh4AG136200 Rh4BG133600 Rh4CG144400 Rh4DG131100
rosa_wichuraiana	Rw2G020230 Rw4G011170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	240, 405, 423, 426, 737
AclWI	GGATC	3 cut(s)	478, 615, 628
AcoI	YGGCCR	1 cut(s)	409
AcuI	CTGAAG	1 cut(s)	332
AfiI	CCNNNNNNNGG	1 cut(s)	733
AgsI	TTSAA	4 cut(s)	119, 356, 515, 640
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	3 cut(s)	287, 527, 679
AluI	AGCT	3 cut(s)	287, 527, 679
Alw21I	GWGCWC	1 cut(s)	634
Alw26I	GTCTC	1 cut(s)	41
AlwI	GGATC	3 cut(s)	478, 615, 628
AlwNI	CAGNNNCTG	1 cut(s)	679
Ama87I	CYCGRG	1 cut(s)	602
AoxI	GGCC	2 cut(s)	409, 712
ApeKI	GCWGC	2 cut(s)	197, 438
Asp700I	GAANNNNTTC	3 cut(s)	52, 365, 510
AsuC2I	CCSGG	1 cut(s)	443
AvaI	CYCGRG	1 cut(s)	602
BamHI	GGATCC	1 cut(s)	620
BanII	GRGCYC	2 cut(s)	275, 464
Bbv12I	GWGCWC	1 cut(s)	634
BbvI	GCAGC	2 cut(s)	184, 450
BccI	CCATC	1 cut(s)	295
BceAI	ACGGC	1 cut(s)	396
BciT130I	CCWGG	1 cut(s)	131
BcnI	CCSGG	1 cut(s)	443
BcoDI	GTCTC	1 cut(s)	41
BfaI	CTAG	4 cut(s)	33, 204, 465, 524
BisI	GCNGC	4 cut(s)	198, 241, 424, 439
BlsI	GCNGC	4 cut(s)	199, 242, 425, 440
Bme1390I	CCNGG	2 cut(s)	131, 443
BmeT110I	CYCGRG	1 cut(s)	602
BmiI	GGNNCC	2 cut(s)	274, 622
BmrFI	CCNGG	2 cut(s)	131, 443
BmsI	GCATC	2 cut(s)	155, 209
BpuEI	CTTGAG	1 cut(s)	311
BpuMI	CCSGG	1 cut(s)	443
Bsa29I	ATCGAT	1 cut(s)	326
BsaAI	YACGTR	2 cut(s)	344, 395
BsaJI	CCNNGG	4 cut(s)	278, 412, 442, 648
BsaXI	ACNNNNNCTCC	2 cut(s)	257, 287
Bsc4I	CCNNNNNNNGG	1 cut(s)	733
Bse1I	ACTGG	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	131
BseCI	ATCGAT	1 cut(s)	326
BseDI	CCNNGG	4 cut(s)	278, 412, 442, 648
BseGI	GGATG	2 cut(s)	340, 484
BseLI	CCNNNNNNNGG	1 cut(s)	733
BseMII	CTCAG	1 cut(s)	675
BseNI	ACTGG	1 cut(s)	95
BseRI	GAGGAG	1 cut(s)	587
BseXI	GCAGC	2 cut(s)	184, 450
BsgI	GTGCAG	2 cut(s)	50, 474
BshFI	GGCC	2 cut(s)	411, 714
BshVI	ATCGAT	1 cut(s)	326
BsiHKAI	GWGCWC	1 cut(s)	634
BsiHKCI	CYCGRG	1 cut(s)	602
BsiSI	CCGG	2 cut(s)	442, 492
BslI	CCNNNNNNNGG	1 cut(s)	733
BsmAI	GTCTC	1 cut(s)	41
BsmI	GAATGC	1 cut(s)	301
BsnI	GGCC	2 cut(s)	411, 714
BsoBI	CYCGRG	1 cut(s)	602
Bsp1286I	GDGCHC	3 cut(s)	275, 464, 634
Bsp143I	GATC	2 cut(s)	470, 620
Bsp19I	CCATGG	2 cut(s)	278, 648
BspACI	CCGC	5 cut(s)	240, 405, 423, 426, 737
BspANI	GGCC	2 cut(s)	411, 714
BspCNI	CTCAG	1 cut(s)	676
BspDI	ATCGAT	1 cut(s)	326
BspLI	GGNNCC	2 cut(s)	274, 622
BspPI	GGATC	3 cut(s)	478, 615, 628
BsrI	ACTGG	1 cut(s)	95
BssECI	CCNNGG	4 cut(s)	278, 412, 442, 648
BssMI	GATC	2 cut(s)	470, 620
BssT1I	CCWWGG	2 cut(s)	278, 648
Bst2UI	CCWGG	1 cut(s)	131
Bst4CI	ACNGT	2 cut(s)	162, 386
Bst6I	CTCTTC	1 cut(s)	79
BstBAI	YACGTR	2 cut(s)	344, 395
BstC8I	GCNNGC	2 cut(s)	167, 645
BstDEI	CTNAG	2 cut(s)	78, 684
BstDSI	CCRYGG	3 cut(s)	278, 412, 648
BstF5I	GGATG	2 cut(s)	340, 484
BstKTI	GATC	2 cut(s)	473, 623
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	2 cut(s)	470, 620
BstMWI	GCNNNNNNNGC	1 cut(s)	237
BstNI	CCWGG	1 cut(s)	131
BstNSI	RCATGY	1 cut(s)	169
BstSCI	CCNGG	2 cut(s)	129, 441
BstSNI	TACGTA	1 cut(s)	344
BstV1I	GCAGC	2 cut(s)	184, 450
BstX2I	RGATCY	1 cut(s)	620
BstYI	RGATCY	1 cut(s)	620
Bsu15I	ATCGAT	1 cut(s)	326
BsuRI	GGCC	2 cut(s)	411, 714
BsuTUI	ATCGAT	1 cut(s)	326
BtgI	CCRYGG	3 cut(s)	278, 412, 648
BtgZI	GCGATG	1 cut(s)	314
BtsCI	GGATG	2 cut(s)	340, 484
BtsIMutI	CAGTG	3 cut(s)	167, 391, 571
Cac8I	GCNNGC	2 cut(s)	167, 645
CaiI	CAGNNNCTG	1 cut(s)	679
ClaI	ATCGAT	1 cut(s)	326
CviAII	CATG	4 cut(s)	101, 166, 279, 649
DdeI	CTNAG	2 cut(s)	78, 684
DpnI	GATC	2 cut(s)	472, 622
DpnII	GATC	2 cut(s)	470, 620
DraI	TTTAAA	1 cut(s)	616
EaeI	YGGCCR	1 cut(s)	409
Eam1104I	CTCTTC	1 cut(s)	79
EarI	CTCTTC	1 cut(s)	79
Eco105I	TACGTA	1 cut(s)	344
Eco130I	CCWWGG	2 cut(s)	278, 648
Eco24I	GRGCYC	2 cut(s)	275, 464
Eco57I	CTGAAG	1 cut(s)	332
Eco88I	CYCGRG	1 cut(s)	602
EcoRII	CCWGG	1 cut(s)	129
EcoT14I	CCWWGG	2 cut(s)	278, 648
EcoT22I	ATGCAT	1 cut(s)	148
EcoT38I	GRGCYC	2 cut(s)	275, 464
ErhI	CCWWGG	2 cut(s)	278, 648
FaeI	CATG	4 cut(s)	104, 169, 282, 652
FatI	CATG	4 cut(s)	100, 165, 278, 648
FauI	CCCGC	1 cut(s)	730
Fnu4HI	GCNGC	4 cut(s)	198, 241, 424, 439
FokI	GGATG	2 cut(s)	347, 491
FriOI	GRGCYC	2 cut(s)	275, 464
Fsp4HI	GCNGC	4 cut(s)	198, 241, 424, 439
FspBI	CTAG	4 cut(s)	33, 204, 465, 524
GluI	GCNGC	4 cut(s)	198, 241, 424, 439
HaeIII	GGCC	2 cut(s)	411, 714
HapII	CCGG	2 cut(s)	442, 492
Hin1II	CATG	4 cut(s)	104, 169, 282, 652
HinfI	GANTC	3 cut(s)	495, 520, 580
HpaII	CCGG	2 cut(s)	442, 492
Hpy166II	GTNNAC	2 cut(s)	556, 579
Hpy188I	TCNGA	4 cut(s)	47, 312, 475, 625
Hpy188III	TCNNGA	2 cut(s)	204, 290
Hpy8I	GTNNAC	2 cut(s)	556, 579
HpyAV	CCTTC	5 cut(s)	34, 125, 476, 657, 704
HpyCH4III	ACNGT	2 cut(s)	162, 386
HpyCH4IV	ACGT	2 cut(s)	343, 394
HpyCH4V	TGCA	8 cut(s)	13, 67, 146, 165, 192, 200, 389, 455
HpyF10VI	GCNNNNNNNGC	1 cut(s)	237
HpyF3I	CTNAG	2 cut(s)	78, 684
HpySE526I	ACGT	2 cut(s)	343, 394
Hsp92II	CATG	4 cut(s)	104, 169, 282, 652
Kzo9I	GATC	2 cut(s)	470, 620
LmnI	GCTCC	1 cut(s)	278
Lsp1109I	GCAGC	2 cut(s)	184, 450
LweI	GCATC	2 cut(s)	155, 209
MaeI	CTAG	4 cut(s)	33, 204, 465, 524
MaeII	ACGT	2 cut(s)	343, 394
MalI	GATC	2 cut(s)	472, 622
MboI	GATC	2 cut(s)	470, 620
MboII	GAAGA	3 cut(s)	66, 210, 325
MflI	RGATCY	1 cut(s)	620
MhlI	GDGCHC	3 cut(s)	275, 464, 634
MlyI	GAGTC	1 cut(s)	574
MmeI	TCCRAC	2 cut(s)	52, 685
MnlI	CCTC	6 cut(s)	80, 262, 325, 469, 565, 611
Mph1103I	ATGCAT	1 cut(s)	148
MroXI	GAANNNNTTC	3 cut(s)	52, 365, 510
MseI	TTAA	2 cut(s)	176, 615
MspI	CCGG	2 cut(s)	442, 492
MspR9I	CCNGG	2 cut(s)	131, 443
Mva1269I	GAATGC	1 cut(s)	301
MvaI	CCWGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	1 cut(s)	237
NciI	CCSGG	1 cut(s)	443
NcoI	CCATGG	2 cut(s)	278, 648
NdeII	GATC	2 cut(s)	470, 620
NlaIII	CATG	4 cut(s)	104, 169, 282, 652
NlaIV	GGNNCC	2 cut(s)	274, 622
NsiI	ATGCAT	1 cut(s)	148
NspI	RCATGY	1 cut(s)	169
PaeI	GCATGC	1 cut(s)	169
PaeR7I	CTCGAG	1 cut(s)	602
PcsI	WCGNNNNNNNCGW	1 cut(s)	640
PctI	GAATGC	1 cut(s)	301
PdmI	GAANNNNTTC	3 cut(s)	52, 365, 510
PfeI	GAWTC	2 cut(s)	495, 520
PkrI	GCNGC	4 cut(s)	199, 242, 425, 440
PleI	GAGTC	1 cut(s)	574
PpsI	GAGTC	1 cut(s)	574
Ppu21I	YACGTR	2 cut(s)	344, 395
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	2 cut(s)	274, 622
PspXI	VCTCGAGB	1 cut(s)	602
PstNI	CAGNNNCTG	1 cut(s)	679
PsuI	RGATCY	1 cut(s)	620
SaqAI	TTAA	2 cut(s)	176, 615
SatI	GCNGC	4 cut(s)	198, 241, 424, 439
Sau3AI	GATC	2 cut(s)	470, 620
SchI	GAGTC	1 cut(s)	574
ScrFI	CCNGG	2 cut(s)	131, 443
SduI	GDGCHC	3 cut(s)	275, 464, 634
SfaNI	GCATC	2 cut(s)	155, 209
Sfr274I	CTCGAG	1 cut(s)	602
SlaI	CTCGAG	1 cut(s)	602
SmlI	CTYRAG	2 cut(s)	290, 602
SmoI	CTYRAG	2 cut(s)	290, 602
SnaBI	TACGTA	1 cut(s)	344
SphI	GCATGC	1 cut(s)	169
SsiI	CCGC	5 cut(s)	240, 405, 423, 426, 737
SspMI	CTAG	4 cut(s)	33, 204, 465, 524
StyD4I	CCNGG	2 cut(s)	129, 441
StyI	CCWWGG	2 cut(s)	278, 648
TaaI	ACNGT	2 cut(s)	162, 386
TaiI	ACGT	2 cut(s)	346, 397
TaqI	TCGA	2 cut(s)	326, 603
TauI	GCSGC	2 cut(s)	243, 426
TfiI	GAWTC	2 cut(s)	495, 520
Tru1I	TTAA	2 cut(s)	176, 615
Tru9I	TTAA	2 cut(s)	176, 615
TscAI	CASTG	3 cut(s)	167, 391, 571
TseI	GCWGC	2 cut(s)	197, 438
TspDTI	ATGAA	2 cut(s)	495, 519
TspRI	CASTG	3 cut(s)	167, 391, 571
XbaI	TCTAGA	1 cut(s)	203
XceI	RCATGY	1 cut(s)	169
XhoI	CTCGAG	1 cut(s)	602
XmnI	GAANNNNTTC	3 cut(s)	52, 365, 510
XspI	CTAG	4 cut(s)	33, 204, 465, 524
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.