Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003207

Physical Location & Seq

Genomic Coordinates Forward (+)

37535706 .. 37537316

Gene Structure 1611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g37610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGGTAATTTCAAAAAGGAAGGGTCAATAGAGGATGTGCTACGTCATCAGATTGAAAAGAATGAATTCTTTGAAGAGAAAGGTGGGGGCAGAGGTGGCAAAGGAAGTGGCGGCGGCGGCGGCGGCAGTGGTGATGGTTTAGGTGGCTCTGGTGGATCAGAGGGTGAAGGCTTTTCTGGAATCATGGATGAAACACTGCAAGTGGTTCTAGCAACTGTTGGTTTTATTTTTCTGTATGTTTACATCATCAGTGGTGAGGAGATTACTCGGCTAGCAAAGGACTACATCAAGTTTGTGTTTTCAGGGTCCAAGAGTATCCGTTTGACGCGTGCAATGCAAAAGTGGGGAAGTTTCTTCCGCACGTTGACTGAGAAGAAGGAATATGATAAGTTCTGGTTGGAGAAGGCCATTCTCACTACTCCAACTGCATATGATACACCTGAAAAGTACCGTAATCTTCTTAGATCTAATTTAGAGCCAGATTCAGATGATGATGACGATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

18.51

Weight (kDa)

4.92

Isoelectric Point (pI)

36.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43630 AT3G59640 AT3G59640
fragaria_vesca	FvH4_1g21910 FvH4_1g21910 FvH4_4g10550 FvH4_4g10550 FvH4_4g10550
malus_domestica	MD08G1231200.v1.1 MD10G1168700.v1.1 MD15G1424100.v1.1
prunus_persica	Prupe.1G205800_v2.0.a1 Prupe.1G570000_v2.0.a1
pyrus_communis	pycom08g20100 pycom15g37610
rosa_chinensis	RchiOBHm_Chr2g0115921 RchiOBHm_Chr4g0406201
rosa_laevigata	RLG00000008790 RLG00000018223
rosa_multiflora	Rmu_sc0012210.1_g000002 Rmu_sc0041989.1_g000001 Rmu_ssc0000197.1_g000008
rosa_roxburghii	Rroxscaffold_2G00127700 Rroxscaffold_2G00128510 Rroxscaffold_5G00350910
rosa_rugosa	Rorug02G0201300 Rorug04G0066100
rosa_samantha	Rh2AG257900 Rh2BG269000 Rh2CG264500 Rh2DG266200 Rh4AG136200 Rh4BG133600 Rh4CG144400 Rh4DG131100
rosa_wichuraiana	Rw2G020230 Rw4G011170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	328
AciI	CCGC	6 cut(s)	111, 114, 117, 120, 123, 358
AclWI	GGATC	1 cut(s)	163
AcsI	RAATTY	1 cut(s)	65
AfaI	GTAC	1 cut(s)	449
AflIII	ACRYGT	1 cut(s)	326
AgsI	TTSAA	3 cut(s)	13, 56, 74
AlwI	GGATC	1 cut(s)	163
AoxI	GGCC	1 cut(s)	405
ApoI	RAATTY	1 cut(s)	65
Asp700I	GAANNNNTTC	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	306
AsuHPI	GGTGA	3 cut(s)	143, 176, 266
AsuNHI	GCTAGC	1 cut(s)	271
AvaII	GGWCC	1 cut(s)	306
BccI	CCATC	1 cut(s)	128
BciVI	GTATCC	1 cut(s)	326
BfaI	CTAG	2 cut(s)	209, 272
BfuI	GTATCC	1 cut(s)	326
BglII	AGATCT	1 cut(s)	464
BisI	GCNGC	5 cut(s)	112, 115, 118, 121, 124
BlsI	GCNGC	5 cut(s)	113, 116, 119, 122, 125
Bme18I	GGWCC	1 cut(s)	306
BmgT120I	GGNCC	1 cut(s)	306
BmiI	GGNNCC	1 cut(s)	307
BmtI	GCTAGC	1 cut(s)	275
Bse3DI	GCAATG	1 cut(s)	339
BseGI	GGATG	2 cut(s)	40, 193
BseMI	GCAATG	1 cut(s)	339
BseMII	CTCAG	1 cut(s)	360
BseRI	GAGGAG	1 cut(s)	272
Bsh1236I	CGCG	1 cut(s)	328
BshFI	GGCC	1 cut(s)	407
BsnI	GGCC	1 cut(s)	407
Bsp143I	GATC	2 cut(s)	155, 464
BspACI	CCGC	6 cut(s)	111, 114, 117, 120, 123, 358
BspANI	GGCC	1 cut(s)	407
BspCNI	CTCAG	1 cut(s)	361
BspFNI	CGCG	1 cut(s)	328
BspLI	GGNNCC	1 cut(s)	307
BspOI	GCTAGC	1 cut(s)	275
BspPI	GGATC	1 cut(s)	163
BsrDI	GCAATG	1 cut(s)	339
BssMI	GATC	2 cut(s)	155, 464
Bst4CI	ACNGT	2 cut(s)	217, 452
Bst6I	CTCTTC	1 cut(s)	69
BstC8I	GCNNGC	2 cut(s)	273, 330
BstDEI	CTNAG	2 cut(s)	369, 461
BstF5I	GGATG	2 cut(s)	40, 193
BstFNI	CGCG	1 cut(s)	328
BstKTI	GATC	2 cut(s)	158, 467
BstMBI	GATC	2 cut(s)	155, 464
BstMWI	GCNNNNNNNGC	5 cut(s)	96, 117, 120, 123, 334
BstUI	CGCG	1 cut(s)	328
BstX2I	RGATCY	1 cut(s)	464
BstYI	RGATCY	1 cut(s)	464
BsuI	GTATCC	1 cut(s)	326
BsuRI	GGCC	1 cut(s)	407
BtsCI	GGATG	2 cut(s)	40, 193
BtsI	GCAGTG	2 cut(s)	133, 194
BtsIMutI	CAGTG	3 cut(s)	133, 194, 256
Cac8I	GCNNGC	2 cut(s)	273, 330
Cfr13I	GGNCC	1 cut(s)	306
CseI	GACGC	1 cut(s)	334
Csp6I	GTAC	1 cut(s)	448
CspCI	CAANNNNNGTGG	2 cut(s)	88, 123
CviAII	CATG	1 cut(s)	184
CviJI	RGCY	5 cut(s)	147, 171, 271, 407, 478
CviKI_1	RGCY	5 cut(s)	147, 171, 271, 407, 478
CviQI	GTAC	1 cut(s)	448
DdeI	CTNAG	2 cut(s)	369, 461
DpnI	GATC	2 cut(s)	157, 466
DpnII	GATC	2 cut(s)	155, 464
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	306
EcoRI	GAATTC	1 cut(s)	65
FaeI	CATG	1 cut(s)	187
FaiI	YATR	5 cut(s)	185, 237, 384, 430, 432
FatI	CATG	1 cut(s)	183
FauNDI	CATATG	1 cut(s)	430
Fnu4HI	GCNGC	5 cut(s)	112, 115, 118, 121, 124
FokI	GGATG	2 cut(s)	47, 200
Fsp4HI	GCNGC	5 cut(s)	112, 115, 118, 121, 124
FspBI	CTAG	2 cut(s)	209, 272
GluI	GCNGC	5 cut(s)	112, 115, 118, 121, 124
HaeIII	GGCC	1 cut(s)	407
HgaI	GACGC	1 cut(s)	334
Hin1II	CATG	1 cut(s)	187
HincII	GTYRAC	1 cut(s)	366
HindII	GTYRAC	1 cut(s)	366
HinfI	GANTC	2 cut(s)	180, 482
HphI	GGTGA	3 cut(s)	143, 176, 266
Hpy166II	GTNNAC	2 cut(s)	241, 366
Hpy188I	TCNGA	3 cut(s)	51, 160, 487
Hpy188III	TCNNGA	1 cut(s)	177
Hpy8I	GTNNAC	2 cut(s)	241, 366
HpyAV	CCTTC	4 cut(s)	14, 161, 370, 397
HpyCH4III	ACNGT	2 cut(s)	217, 452
HpyCH4IV	ACGT	2 cut(s)	43, 362
HpyCH4V	TGCA	4 cut(s)	199, 332, 337, 428
HpyF10VI	GCNNNNNNNGC	5 cut(s)	96, 117, 120, 123, 334
HpyF3I	CTNAG	2 cut(s)	369, 461
HpySE526I	ACGT	2 cut(s)	43, 362
Hsp92II	CATG	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	155, 464
LpnPI	CCDG	6 cut(s)	135, 162, 288, 379, 453, 492
MaeI	CTAG	2 cut(s)	209, 272
MaeII	ACGT	2 cut(s)	43, 362
MalI	GATC	2 cut(s)	157, 466
MboI	GATC	2 cut(s)	155, 464
MboII	GAAGA	4 cut(s)	86, 346, 385, 449
MflI	RGATCY	1 cut(s)	464
MluCI	AATT	3 cut(s)	7, 65, 469
MluI	ACGCGT	1 cut(s)	326
MmeI	TCCRAC	2 cut(s)	378, 446
MnlI	CCTC	4 cut(s)	25, 86, 154, 250
MroXI	GAANNNNTTC	1 cut(s)	65
MvnI	CGCG	1 cut(s)	328
MwoI	GCNNNNNNNGC	5 cut(s)	96, 117, 120, 123, 334
NdeI	CATATG	1 cut(s)	430
NdeII	GATC	2 cut(s)	155, 464
NheI	GCTAGC	1 cut(s)	271
NlaIII	CATG	1 cut(s)	187
NlaIV	GGNNCC	1 cut(s)	307
NmeAIII	GCCGAG	1 cut(s)	247
PdmI	GAANNNNTTC	1 cut(s)	65
PfeI	GAWTC	2 cut(s)	180, 482
PkrI	GCNGC	5 cut(s)	113, 116, 119, 122, 125
PspN4I	GGNNCC	1 cut(s)	307
PspPI	GGNCC	1 cut(s)	306
PsuI	RGATCY	1 cut(s)	464
RsaI	GTAC	1 cut(s)	449
RsaNI	GTAC	1 cut(s)	448
SatI	GCNGC	5 cut(s)	112, 115, 118, 121, 124
Sau3AI	GATC	2 cut(s)	155, 464
Sau96I	GGNCC	1 cut(s)	306
SetI	ASST	6 cut(s)	46, 85, 97, 145, 365, 442
SinI	GGWCC	1 cut(s)	306
Sse9I	AATT	3 cut(s)	7, 65, 469
SsiI	CCGC	6 cut(s)	111, 114, 117, 120, 123, 358
SspMI	CTAG	2 cut(s)	209, 272
TaaI	ACNGT	2 cut(s)	217, 452
TaiI	ACGT	2 cut(s)	46, 365
TasI	AATT	3 cut(s)	7, 65, 469
TauI	GCSGC	5 cut(s)	114, 117, 120, 123, 126
TfiI	GAWTC	2 cut(s)	180, 482
TscAI	CASTG	3 cut(s)	133, 201, 256
TspDTI	ATGAA	2 cut(s)	78, 204
TspGWI	ACGGA	1 cut(s)	308
TspRI	CASTG	3 cut(s)	133, 201, 256
VpaK11BI	GGWCC	1 cut(s)	306
XapI	RAATTY	1 cut(s)	65
XmnI	GAANNNNTTC	1 cut(s)	65
XspI	CTAG	2 cut(s)	209, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.