Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003207

Physical Location & Seq

Genomic Coordinates Forward (+)

22028649 .. 22030505

Gene Structure 1857 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G59640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAGCTCTACGCAGGCTAATCTATGCAGACCATCCTTGTTCTGTGCAAGGACAACGCAAACAAGACATGTCTCTAGTGCACCTTTTATGTCGTCATTACGCTTTGATTATCGACCACTCCCCAAATTAGCTATTCGGGCATCTGCATCATCATCGATGTCTTCTCAGTTTTCGCCTCTACAGAATCATCGCTGCCGGAATCAGAGGCAAGGTCCTGTTGTGTGTTTACTTGGTGGGAAGGATAAGTCTAACGGTAGTAATGAGCTATCATCAACATGGGAAGCTATTGAGAAAGCAATGGGGAAGAAATCAGTTGAAGATATGTTGCGTGAGCAGATACAAAAGAAAGACACTGGCGGCATTCCTCCACGAGGACGAGGAGGAGGGGGTGGCGGTAGAAATGGTGGGAATAATGGGTCTGGAGGCTCATCAGGGGAAGATGGTGGTCTTGCTAGTTTTGGGGATGAAACTCTGCAAGTGGTATTAGCAACCTTAGGCTTCATCTTTCTGTACTTCTACATCATCAATGGGGAGGAGTTGTTCCGTCTTGCAAGAGATTACATTAGGTACCTTATAGGAAGACCCAAGAGTGTTAGGCTGACCCGAGTTATGGAAGGTTGGAGTAGATTCTTCGAGAAGATGTCGAGGAAAAAAGTGTATAACGAGTACTGGCTAAAGATTAAGCGATCATCAACAAGTCTACCTGGTCTGGTAACCCGGGCAAATACAAACGCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

246

Amino Acids

27.14

Weight (kDa)

10.2

Isoelectric Point (pI)

47.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43630 AT3G59640 AT3G59640
fragaria_vesca	FvH4_1g21910 FvH4_1g21910 FvH4_4g10550 FvH4_4g10550 FvH4_4g10550
malus_domestica	MD08G1231200.v1.1 MD10G1168700.v1.1 MD15G1424100.v1.1
prunus_persica	Prupe.1G205800_v2.0.a1 Prupe.1G570000_v2.0.a1
pyrus_communis	pycom08g20100 pycom15g37610
rosa_chinensis	RchiOBHm_Chr2g0115921 RchiOBHm_Chr4g0406201
rosa_laevigata	RLG00000008790 RLG00000018223
rosa_multiflora	Rmu_sc0012210.1_g000002 Rmu_sc0041989.1_g000001 Rmu_ssc0000197.1_g000008
rosa_roxburghii	Rroxscaffold_2G00127700 Rroxscaffold_2G00128510 Rroxscaffold_5G00350910
rosa_rugosa	Rorug02G0201300 Rorug04G0066100
rosa_samantha	Rh2AG257900 Rh2BG269000 Rh2CG264500 Rh2DG266200 Rh4AG136200 Rh4BG133600 Rh4CG144400 Rh4DG131100
rosa_wichuraiana	Rw2G020230 Rw4G011170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	567
AccB1I	GGYRCC	1 cut(s)	567
AccI	GTMKAC	1 cut(s)	700
AciI	CCGC	2 cut(s)	357, 393
AfaI	GTAC	3 cut(s)	512, 569, 668
AfiI	CCNNNNNNNGG	2 cut(s)	371, 610
AflIII	ACRYGT	1 cut(s)	67
AgsI	TTSAA	1 cut(s)	317
AjnI	CCWGG	1 cut(s)	703
AloI	GAACNNNNNNTCC	2 cut(s)	524, 556
AluBI	AGCT	4 cut(s)	6, 131, 265, 284
AluI	AGCT	4 cut(s)	6, 131, 265, 284
Alw21I	GWGCWC	2 cut(s)	8, 82
Alw26I	GTCTC	1 cut(s)	76
Alw44I	GTGCAC	1 cut(s)	78
Ama87I	CYCGRG	2 cut(s)	603, 717
ApaLI	GTGCAC	1 cut(s)	78
ApeKI	GCWGC	1 cut(s)	192
Asp718I	GGTACC	1 cut(s)	567
AspS9I	GGNCC	1 cut(s)	212
AsuC2I	CCSGG	2 cut(s)	718, 719
AvaI	CYCGRG	2 cut(s)	603, 717
AvaII	GGWCC	1 cut(s)	212
AxyI	CCTNAGG	1 cut(s)	493
BaeGI	GKGCMC	1 cut(s)	82
BanI	GGYRCC	1 cut(s)	567
BanII	GRGCYC	1 cut(s)	8
BauI	CACGAG	1 cut(s)	369
BbsI	GAAGAC	2 cut(s)	153, 586
Bbv12I	GWGCWC	2 cut(s)	8, 82
BbvI	GCAGC	1 cut(s)	179
BccI	CCATC	2 cut(s)	40, 434
BcgI	CGANNNNNNTGC	2 cut(s)	135, 169
BciT130I	CCWGG	1 cut(s)	705
BcnI	CCSGG	2 cut(s)	718, 719
BcoDI	GTCTC	1 cut(s)	76
BfaI	CTAG	2 cut(s)	75, 453
BfmI	CTRYAG	1 cut(s)	179
BisI	GCNGC	2 cut(s)	193, 358
BlsI	GCNGC	2 cut(s)	194, 359
BmcAI	AGTACT	1 cut(s)	668
Bme1390I	CCNGG	3 cut(s)	705, 718, 719
Bme18I	GGWCC	1 cut(s)	212
BmeT110I	CYCGRG	2 cut(s)	603, 717
BmgT120I	GGNCC	1 cut(s)	212
BmiI	GGNNCC	1 cut(s)	569
BmrFI	CCNGG	3 cut(s)	705, 718, 719
BmsI	GCATC	2 cut(s)	149, 155
BpiI	GAAGAC	2 cut(s)	153, 586
BpmI	CTGGAG	1 cut(s)	441
BpuMI	CCSGG	2 cut(s)	718, 719
Bsa29I	ATCGAT	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	717
BsaXI	ACNNNNNCTCC	2 cut(s)	524, 554
Bsc4I	CCNNNNNNNGG	2 cut(s)	371, 610
Bse1I	ACTGG	2 cut(s)	358, 674
Bse21I	CCTNAGG	1 cut(s)	493
Bse3DI	GCAATG	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	705
BseCI	ATCGAT	1 cut(s)	155
BseDI	CCNNGG	1 cut(s)	717
BseGI	GGATG	2 cut(s)	32, 469
BseLI	CCNNNNNNNGG	2 cut(s)	371, 610
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	1 cut(s)	179
BseNI	ACTGG	2 cut(s)	358, 674
BseRI	GAGGAG	3 cut(s)	393, 396, 548
BseSI	GKGCMC	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	179
BshNI	GGYRCC	1 cut(s)	567
BshVI	ATCGAT	1 cut(s)	155
BsiHKAI	GWGCWC	2 cut(s)	8, 82
BsiHKCI	CYCGRG	2 cut(s)	603, 717
BsiSI	CCGG	2 cut(s)	196, 718
BslI	CCNNNNNNNGG	2 cut(s)	371, 610
BsmAI	GTCTC	1 cut(s)	76
BsmI	GAATGC	1 cut(s)	360
BsoBI	CYCGRG	2 cut(s)	603, 717
Bsp1286I	GDGCHC	2 cut(s)	8, 82
Bsp143I	GATC	1 cut(s)	686
BspACI	CCGC	2 cut(s)	357, 393
BspCNI	CTCAG	1 cut(s)	178
BspDI	ATCGAT	1 cut(s)	155
BspLI	GGNNCC	1 cut(s)	569
BspT107I	GGYRCC	1 cut(s)	567
BsrDI	GCAATG	1 cut(s)	303
BsrI	ACTGG	2 cut(s)	358, 674
BssECI	CCNNGG	1 cut(s)	717
BssMI	GATC	1 cut(s)	686
BssSI	CACGAG	1 cut(s)	369
Bst2BI	CACGAG	1 cut(s)	369
Bst2UI	CCWGG	1 cut(s)	705
Bst4CI	ACNGT	1 cut(s)	254
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	2 cut(s)	165, 493
BstEII	GGTNACC	1 cut(s)	712
BstENI	CCTNNNNNAGG	1 cut(s)	369
BstF5I	GGATG	2 cut(s)	32, 469
BstKTI	GATC	1 cut(s)	689
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	1 cut(s)	686
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstNI	CCWGG	1 cut(s)	705
BstNSI	RCATGY	1 cut(s)	71
BstPI	GGTNACC	1 cut(s)	712
BstSCI	CCNGG	3 cut(s)	703, 716, 717
BstSFI	CTRYAG	1 cut(s)	179
BstSLI	GKGCMC	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	179
BstV2I	GAAGAC	2 cut(s)	153, 586
Bsu15I	ATCGAT	1 cut(s)	155
Bsu36I	CCTNAGG	1 cut(s)	493
BsuTUI	ATCGAT	1 cut(s)	155
BtgZI	GCGATG	1 cut(s)	173
BtsCI	GGATG	2 cut(s)	32, 469
BtsIMutI	CAGTG	1 cut(s)	351
Cac8I	GCNNGC	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	212
Cfr9I	CCCGGG	1 cut(s)	717
ClaI	ATCGAT	1 cut(s)	155
CsiI	ACCWGGT	1 cut(s)	703
Csp6I	GTAC	3 cut(s)	511, 568, 667
CviAII	CATG	2 cut(s)	68, 276
CviJI	RGCY	9 cut(s)	6, 17, 131, 265, 284, 426, 498, 598, 673
CviKI_1	RGCY	9 cut(s)	6, 17, 131, 265, 284, 426, 498, 598, 673
CviQI	GTAC	3 cut(s)	511, 568, 667
DdeI	CTNAG	2 cut(s)	165, 493
DpnI	GATC	1 cut(s)	688
DpnII	GATC	1 cut(s)	686
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	212
Eco53kI	GAGCTC	1 cut(s)	6
Eco81I	CCTNAGG	1 cut(s)	493
Eco88I	CYCGRG	2 cut(s)	603, 717
Eco91I	GGTNACC	1 cut(s)	712
EcoICRI	GAGCTC	1 cut(s)	6
EcoNI	CCTNNNNNAGG	1 cut(s)	369
EcoO109I	RGGNCCY	1 cut(s)	212
EcoO65I	GGTNACC	1 cut(s)	712
EcoRII	CCWGG	1 cut(s)	703
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	2 cut(s)	71, 279
FaiI	YATR	8 cut(s)	25, 69, 89, 277, 323, 575, 611, 660
FatI	CATG	2 cut(s)	67, 275
FblI	GTMKAC	1 cut(s)	700
Fnu4HI	GCNGC	2 cut(s)	193, 358
FokI	GGATG	2 cut(s)	19, 476
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	2 cut(s)	193, 358
FspBI	CTAG	2 cut(s)	75, 453
GluI	GCNGC	2 cut(s)	193, 358
GsuI	CTGGAG	1 cut(s)	441
HapII	CCGG	2 cut(s)	196, 718
Hin1II	CATG	2 cut(s)	71, 279
HinfI	GANTC	3 cut(s)	184, 199, 627
HpaII	CCGG	2 cut(s)	196, 718
Hpy166II	GTNNAC	3 cut(s)	80, 227, 701
Hpy188I	TCNGA	1 cut(s)	204
Hpy188III	TCNNGA	3 cut(s)	420, 634, 738
Hpy8I	GTNNAC	3 cut(s)	80, 227, 701
HpyAV	CCTTC	2 cut(s)	232, 608
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4V	TGCA	6 cut(s)	27, 47, 80, 146, 475, 551
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	2 cut(s)	165, 493
Hsp92II	CATG	2 cut(s)	71, 279
KpnI	GGTACC	1 cut(s)	571
Kzo9I	GATC	1 cut(s)	686
Lsp1109I	GCAGC	1 cut(s)	179
LweI	GCATC	2 cut(s)	149, 155
MabI	ACCWGGT	1 cut(s)	703
MaeI	CTAG	2 cut(s)	75, 453
MaeIII	GTNAC	1 cut(s)	712
MalI	GATC	1 cut(s)	688
MboI	GATC	1 cut(s)	686
MboII	GAAGA	7 cut(s)	153, 316, 329, 449, 591, 622, 649
MhlI	GDGCHC	2 cut(s)	8, 82
MluCI	AATT	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	599
MseI	TTAA	1 cut(s)	681
MslI	CAYNNNNRTG	1 cut(s)	274
MspI	CCGG	2 cut(s)	196, 718
MspR9I	CCNGG	3 cut(s)	705, 718, 719
Mva1269I	GAATGC	1 cut(s)	360
MvaI	CCWGG	1 cut(s)	705
MwoI	GCNNNNNNNGC	1 cut(s)	137
NciI	CCSGG	2 cut(s)	718, 719
NdeII	GATC	1 cut(s)	686
NlaIII	CATG	2 cut(s)	71, 279
NlaIV	GGNNCC	1 cut(s)	569
NspI	RCATGY	1 cut(s)	71
PciI	ACATGT	1 cut(s)	67
PctI	GAATGC	1 cut(s)	360
PfeI	GAWTC	3 cut(s)	184, 199, 627
PkrI	GCNGC	2 cut(s)	194, 359
PpuMI	RGGWCCY	1 cut(s)	212
PscI	ACATGT	1 cut(s)	67
Psp124BI	GAGCTC	1 cut(s)	8
Psp5II	RGGWCCY	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	703
PspEI	GGTNACC	1 cut(s)	712
PspGI	CCWGG	1 cut(s)	703
PspN4I	GGNNCC	1 cut(s)	569
PspPI	GGNCC	1 cut(s)	212
PspPPI	RGGWCCY	1 cut(s)	212
RsaI	GTAC	3 cut(s)	512, 569, 668
RsaNI	GTAC	3 cut(s)	511, 568, 667
RseI	CAYNNNNRTG	1 cut(s)	274
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	1 cut(s)	681
SatI	GCNGC	2 cut(s)	193, 358
Sau3AI	GATC	1 cut(s)	686
Sau96I	GGNCC	1 cut(s)	212
ScaI	AGTACT	1 cut(s)	668
ScrFI	CCNGG	3 cut(s)	705, 718, 719
SduI	GDGCHC	2 cut(s)	8, 82
SexAI	ACCWGGT	1 cut(s)	703
SfaNI	GCATC	2 cut(s)	149, 155
SfcI	CTRYAG	1 cut(s)	179
SinI	GGWCC	1 cut(s)	212
SmaI	CCCGGG	1 cut(s)	719
SmiMI	CAYNNNNRTG	1 cut(s)	274
Sse9I	AATT	1 cut(s)	125
SsiI	CCGC	2 cut(s)	357, 393
SspMI	CTAG	2 cut(s)	75, 453
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	3 cut(s)	703, 716, 717
TaaI	ACNGT	1 cut(s)	254
TaqI	TCGA	4 cut(s)	112, 155, 633, 644
TasI	AATT	1 cut(s)	125
TatI	WGTACW	2 cut(s)	510, 666
TauI	GCSGC	1 cut(s)	360
TfiI	GAWTC	3 cut(s)	184, 199, 627
Tru1I	TTAA	1 cut(s)	681
Tru9I	TTAA	1 cut(s)	681
TscAI	CASTG	1 cut(s)	358
TseI	GCWGC	1 cut(s)	192
TspDTI	ATGAA	2 cut(s)	480, 490
TspGWI	ACGGA	1 cut(s)	533
TspMI	CCCGGG	1 cut(s)	717
TspRI	CASTG	1 cut(s)	358
VneI	GTGCAC	1 cut(s)	78
VpaK11BI	GGWCC	1 cut(s)	212
XagI	CCTNNNNNAGG	1 cut(s)	369
XceI	RCATGY	1 cut(s)	71
XmaI	CCCGGG	1 cut(s)	717
XmiI	GTMKAC	1 cut(s)	700
XspI	CTAG	2 cut(s)	75, 453
ZrmI	AGTACT	1 cut(s)	668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.