Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003207

Physical Location & Seq

Genomic Coordinates Reverse (-)

13851405 .. 13856467

Gene Structure 5063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g21910.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGAGCATTTTGCAGATTACTTCTTGCCAACCAAGCCTCTATGTCAGAAGAACTTCTCAATCTCTGCATCTCTCGTCTAAGCCATATATTTTACCAGTCCATGCTACAATTCCCCTTCGAAATTCTTCCTTGACAATCCATAATGCATCAAATCAACAACAGTGCATACCCATATTGAAGAACCAGAAATGCAGGGCTTCATCTATGTACCAACATCCTTCACCTGTCTGCTTATTAGGCGGCAAGGGAAAGAATGGAAGTGATGATGAGGGCTCATCATGGAAAGCTCTTGAGAATGCAACCGGTAATCTAAAGGAGGAATTATCGATAGAGAATGTATTACGGAAGCAGATTGAAAAGAAAGAATTCTACAAAGACAAAACCAGTGTAAAACGTGGCGGCGGCAATCATGGTGGTATCCGCGGTGGTGGTGGCAATGGGGGTGGTGGCAATGGGGGCTCTAGTGGATCAGATGGCAGAGGCTTTGGTGGAATCATTAATGAAACACTGCAAGTGATTCTAGCAACTATTGGGGTTGTTTTTCTGTATGTTTACATCATCAGTGGCGATGAGTGGACTCGTCTAGCAAAAGACTACGTCAAGTATCTATTTTCAGGATCCGAGAGTGCTCGTTTGAAGCGTGCCATGTACAAATGGAGAAAGTTCTACCAGAAGCTGACCAAGAAGAAGTTGAATGATACGTTCAGGTTGGAGGAAGGCCATAATCAGCACCCTGACTTGGTGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

250

Amino Acids

27.4

Weight (kDa)

9.7

Isoelectric Point (pI)

48.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43630 AT3G59640 AT3G59640
fragaria_vesca	FvH4_1g21910 FvH4_1g21910 FvH4_4g10550 FvH4_4g10550 FvH4_4g10550
malus_domestica	MD08G1231200.v1.1 MD10G1168700.v1.1 MD15G1424100.v1.1
prunus_persica	Prupe.1G205800_v2.0.a1 Prupe.1G570000_v2.0.a1
pyrus_communis	pycom08g20100 pycom15g37610
rosa_chinensis	RchiOBHm_Chr2g0115921 RchiOBHm_Chr4g0406201
rosa_laevigata	RLG00000008790 RLG00000018223
rosa_multiflora	Rmu_sc0012210.1_g000002 Rmu_sc0041989.1_g000001 Rmu_ssc0000197.1_g000008
rosa_roxburghii	Rroxscaffold_2G00127700 Rroxscaffold_2G00128510 Rroxscaffold_5G00350910
rosa_rugosa	Rorug02G0201300 Rorug04G0066100
rosa_samantha	Rh2AG257900 Rh2BG269000 Rh2CG264500 Rh2DG266200 Rh4AG136200 Rh4BG133600 Rh4CG144400 Rh4DG131100
rosa_wichuraiana	Rw2G020230 Rw4G011170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	423
AciI	CCGC	5 cut(s)	240, 399, 402, 421, 423
AclWI	GGATC	3 cut(s)	475, 612, 625
AcsI	RAATTY	2 cut(s)	121, 365
AfaI	GTAC	2 cut(s)	209, 650
AfiI	CCNNNNNNNGG	1 cut(s)	739
AgeI	ACCGGT	1 cut(s)	302
AgsI	TTSAA	4 cut(s)	178, 356, 637, 694
AluBI	AGCT	2 cut(s)	287, 676
AluI	AGCT	2 cut(s)	287, 676
Alw21I	GWGCWC	1 cut(s)	631
AlwI	GGATC	3 cut(s)	475, 612, 625
AlwNI	CAGNNNCTG	1 cut(s)	676
AoxI	GGCC	1 cut(s)	718
ApoI	RAATTY	2 cut(s)	121, 365
AseI	ATTAAT	1 cut(s)	498
AsiGI	ACCGGT	1 cut(s)	302
Asp700I	GAANNNNTTC	3 cut(s)	52, 124, 365
AsuHPI	GGTGA	1 cut(s)	213
AsuII	TTCGAA	1 cut(s)	118
BamHI	GGATCC	1 cut(s)	617
BanII	GRGCYC	2 cut(s)	275, 461
Bbv12I	GWGCWC	1 cut(s)	631
BccI	CCATC	1 cut(s)	467
BciVI	GTATCC	1 cut(s)	428
BfaI	CTAG	3 cut(s)	462, 521, 584
BfuI	GTATCC	1 cut(s)	428
BisI	GCNGC	3 cut(s)	241, 400, 403
BlsI	GCNGC	3 cut(s)	242, 401, 404
BmiI	GGNNCC	1 cut(s)	619
BmsI	GCATC	2 cut(s)	76, 155
Bpu14I	TTCGAA	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	311
Bsa29I	ATCGAT	1 cut(s)	326
BsaJI	CCNNGG	1 cut(s)	421
BsaWI	WCCGGW	1 cut(s)	302
Bsc4I	CCNNNNNNNGG	1 cut(s)	739
Bse118I	RCCGGY	1 cut(s)	302
Bse1I	ACTGG	2 cut(s)	95, 384
Bse3DI	GCAATG	2 cut(s)	442, 457
BseCI	ATCGAT	1 cut(s)	326
BseDI	CCNNGG	1 cut(s)	421
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	1 cut(s)	739
BseMI	GCAATG	2 cut(s)	442, 457
BseNI	ACTGG	2 cut(s)	95, 384
Bsh1236I	CGCG	1 cut(s)	423
BshFI	GGCC	1 cut(s)	720
BshTI	ACCGGT	1 cut(s)	302
BshVI	ATCGAT	1 cut(s)	326
BsiHKAI	GWGCWC	1 cut(s)	631
BsiSI	CCGG	1 cut(s)	303
BslI	CCNNNNNNNGG	1 cut(s)	739
BsmI	GAATGC	1 cut(s)	301
BsnI	GGCC	1 cut(s)	720
Bsp119I	TTCGAA	1 cut(s)	118
Bsp1286I	GDGCHC	3 cut(s)	275, 461, 631
Bsp1407I	TGTACA	1 cut(s)	648
Bsp143I	GATC	2 cut(s)	467, 617
BspACI	CCGC	5 cut(s)	240, 399, 402, 421, 423
BspANI	GGCC	1 cut(s)	720
BspDI	ATCGAT	1 cut(s)	326
BspFNI	CGCG	1 cut(s)	423
BspLI	GGNNCC	1 cut(s)	619
BspPI	GGATC	3 cut(s)	475, 612, 625
BspT104I	TTCGAA	1 cut(s)	118
BsrDI	GCAATG	2 cut(s)	442, 457
BsrFI	RCCGGY	1 cut(s)	302
BsrGI	TGTACA	1 cut(s)	648
BsrI	ACTGG	2 cut(s)	95, 384
BssAI	RCCGGY	1 cut(s)	302
BssECI	CCNNGG	1 cut(s)	421
BssMI	GATC	2 cut(s)	467, 617
Bst4CI	ACNGT	1 cut(s)	162
BstAUI	TGTACA	1 cut(s)	648
BstBI	TTCGAA	1 cut(s)	118
BstC8I	GCNNGC	1 cut(s)	642
BstDEI	CTNAG	1 cut(s)	78
BstDSI	CCRYGG	1 cut(s)	421
BstF5I	GGATG	1 cut(s)	214
BstFNI	CGCG	1 cut(s)	423
BstKTI	GATC	2 cut(s)	470, 620
BstMBI	GATC	2 cut(s)	467, 617
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 237, 456
BstUI	CGCG	1 cut(s)	423
BstX2I	RGATCY	1 cut(s)	617
BstYI	RGATCY	1 cut(s)	617
Bsu15I	ATCGAT	1 cut(s)	326
BsuI	GTATCC	1 cut(s)	428
BsuRI	GGCC	1 cut(s)	720
BsuTUI	ATCGAT	1 cut(s)	326
BtgI	CCRYGG	1 cut(s)	421
BtgZI	GCGATG	1 cut(s)	582
BtsCI	GGATG	1 cut(s)	214
BtsI	GCAGTG	1 cut(s)	506
BtsIMutI	CAGTG	4 cut(s)	167, 391, 506, 568
Cac8I	GCNNGC	1 cut(s)	642
CaiI	CAGNNNCTG	1 cut(s)	676
Cfr10I	RCCGGY	1 cut(s)	302
Cfr42I	CCGCGG	1 cut(s)	424
ClaI	ATCGAT	1 cut(s)	326
Csp6I	GTAC	2 cut(s)	208, 649
CspAI	ACCGGT	1 cut(s)	302
CspCI	CAANNNNNGTGG	4 cut(s)	394, 424, 429, 459
CviAII	CATG	4 cut(s)	101, 279, 410, 646
CviJI	RGCY	9 cut(s)	36, 82, 197, 273, 287, 459, 483, 676, 720
CviKI_1	RGCY	9 cut(s)	36, 82, 197, 273, 287, 459, 483, 676, 720
CviQI	GTAC	2 cut(s)	208, 649
DdeI	CTNAG	1 cut(s)	78
DpnI	GATC	2 cut(s)	469, 619
DpnII	GATC	2 cut(s)	467, 617
Eco24I	GRGCYC	2 cut(s)	275, 461
EcoRI	GAATTC	1 cut(s)	365
EcoT22I	ATGCAT	1 cut(s)	148
EcoT38I	GRGCYC	2 cut(s)	275, 461
FaeI	CATG	4 cut(s)	104, 282, 413, 649
FatI	CATG	4 cut(s)	100, 278, 409, 645
Fnu4HI	GCNGC	3 cut(s)	241, 400, 403
FokI	GGATG	1 cut(s)	201
FriOI	GRGCYC	2 cut(s)	275, 461
Fsp4HI	GCNGC	3 cut(s)	241, 400, 403
FspBI	CTAG	3 cut(s)	462, 521, 584
GluI	GCNGC	3 cut(s)	241, 400, 403
HaeIII	GGCC	1 cut(s)	720
HapII	CCGG	1 cut(s)	303
Hin1II	CATG	4 cut(s)	104, 282, 413, 649
HinfI	GANTC	3 cut(s)	492, 517, 577
HpaII	CCGG	1 cut(s)	303
HphI	GGTGA	1 cut(s)	213
Hpy166II	GTNNAC	2 cut(s)	553, 576
Hpy188I	TCNGA	3 cut(s)	47, 472, 622
Hpy188III	TCNNGA	2 cut(s)	290, 615
Hpy8I	GTNNAC	2 cut(s)	553, 576
HpyAV	CCTTC	3 cut(s)	125, 228, 710
HpyCH4III	ACNGT	1 cut(s)	162
HpyCH4IV	ACGT	3 cut(s)	394, 597, 701
HpyCH4V	TGCA	7 cut(s)	13, 67, 146, 165, 192, 299, 511
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 237, 456
HpyF3I	CTNAG	1 cut(s)	78
HpySE526I	ACGT	3 cut(s)	394, 597, 701
Hsp92II	CATG	4 cut(s)	104, 282, 413, 649
KspI	CCGCGG	1 cut(s)	424
Kzo9I	GATC	2 cut(s)	467, 617
LpnPI	CCDG	9 cut(s)	108, 178, 197, 237, 316, 397, 600, 683, 691
LweI	GCATC	2 cut(s)	76, 155
MaeI	CTAG	3 cut(s)	462, 521, 584
MaeII	ACGT	3 cut(s)	394, 597, 701
MalI	GATC	2 cut(s)	469, 619
MboI	GATC	2 cut(s)	467, 617
MboII	GAAGA	4 cut(s)	60, 117, 190, 697
MflI	RGATCY	1 cut(s)	617
MhlI	GDGCHC	3 cut(s)	275, 461, 631
MluCI	AATT	4 cut(s)	108, 121, 320, 365
MlyI	GAGTC	1 cut(s)	571
MmeI	TCCRAC	1 cut(s)	690
MnlI	CCTC	5 cut(s)	47, 262, 310, 473, 706
Mph1103I	ATGCAT	1 cut(s)	148
MroXI	GAANNNNTTC	3 cut(s)	52, 124, 365
MseI	TTAA	1 cut(s)	498
MspA1I	CMGCKG	1 cut(s)	423
MspI	CCGG	1 cut(s)	303
Mva1269I	GAATGC	1 cut(s)	301
MvnI	CGCG	1 cut(s)	423
MwoI	GCNNNNNNNGC	3 cut(s)	33, 237, 456
NdeII	GATC	2 cut(s)	467, 617
NlaIII	CATG	4 cut(s)	104, 282, 413, 649
NlaIV	GGNNCC	1 cut(s)	619
NsiI	ATGCAT	1 cut(s)	148
NspV	TTCGAA	1 cut(s)	118
PcsI	WCGNNNNNNNCGW	1 cut(s)	637
PctI	GAATGC	1 cut(s)	301
PdmI	GAANNNNTTC	3 cut(s)	52, 124, 365
PfeI	GAWTC	2 cut(s)	492, 517
PflFI	GACNNNGTC	1 cut(s)	596
PinAI	ACCGGT	1 cut(s)	302
PkrI	GCNGC	3 cut(s)	242, 401, 404
PleI	GAGTC	1 cut(s)	571
PpsI	GAGTC	1 cut(s)	571
PshBI	ATTAAT	1 cut(s)	498
PspN4I	GGNNCC	1 cut(s)	619
PstNI	CAGNNNCTG	1 cut(s)	676
PsuI	RGATCY	1 cut(s)	617
PsyI	GACNNNGTC	1 cut(s)	596
RsaI	GTAC	2 cut(s)	209, 650
RsaNI	GTAC	2 cut(s)	208, 649
SacII	CCGCGG	1 cut(s)	424
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	3 cut(s)	241, 400, 403
Sau3AI	GATC	2 cut(s)	467, 617
SchI	GAGTC	1 cut(s)	571
SduI	GDGCHC	3 cut(s)	275, 461, 631
SetI	ASST	7 cut(s)	226, 289, 397, 600, 678, 704, 710
SfaNI	GCATC	2 cut(s)	76, 155
Sfr303I	CCGCGG	1 cut(s)	424
SfuI	TTCGAA	1 cut(s)	118
SgrBI	CCGCGG	1 cut(s)	424
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	4 cut(s)	108, 121, 320, 365
SsiI	CCGC	5 cut(s)	240, 399, 402, 421, 423
SspMI	CTAG	3 cut(s)	462, 521, 584
TaaI	ACNGT	1 cut(s)	162
TaiI	ACGT	3 cut(s)	397, 600, 704
TaqI	TCGA	2 cut(s)	118, 326
TasI	AATT	4 cut(s)	108, 121, 320, 365
TatI	WGTACW	1 cut(s)	648
TauI	GCSGC	3 cut(s)	243, 402, 405
TfiI	GAWTC	2 cut(s)	492, 517
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	4 cut(s)	167, 391, 513, 568
TspDTI	ATGAA	2 cut(s)	189, 516
TspGWI	ACGGA	1 cut(s)	358
TspRI	CASTG	4 cut(s)	167, 391, 513, 568
Tth111I	GACNNNGTC	1 cut(s)	596
VspI	ATTAAT	1 cut(s)	498
XapI	RAATTY	2 cut(s)	121, 365
XmnI	GAANNNNTTC	3 cut(s)	52, 124, 365
XspI	CTAG	3 cut(s)	462, 521, 584
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.