MD08G1231200.v1.1

glycine-rich protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0003207
Physical Location & Seq
Forward (+)
29743015 .. 29746871
3857 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1231200.v1.1.491

Sequence Viewer

Length: 801 bp
ATGAACACCGTTCAGATAACATCCTGCCAGCCTAGCATCTATTTCAGAAACCCATCTCAATCTCTCCGCCTCTATTCTAGTCCGTGTTTGCTTCCAAATCGTGCTAAATGTCTCCTTGGAACTTCATTGAAACCAAAACATAATGCACGAATCCAGCAACAATGCGTGGCTGTACTGAAGAACCAGCAATGCGGGGTCGTATCTAAGTACCACCGATCTGCACCTGTCTGTTTATTGGGTGGCAAGGGAAAGAATGAAAACGGTGATGAGGGTTCCCCCTGGAAGGCTCTTGAGAAAGCAATGGGTAATTTCAAAAAGGAAGGGTCAATAGAGGATGTGCTACGTCAGCAGATTGAAAAGAACGAATTCTATGAAGAGAAAGGTGGGGGCGGAGGTGGCAAAGGAAGGGGCGGTGGTGGTGGTGGTGGTGATGGTTTAGGTGGCTCTGGTGGAACAGAAGATGAAGGCTTTGCTGGAATCATGGATGAAACACTGCAAGTGATTCTAGCAACTGTTGGGTTTATTTTTCTGTATGTTTACATCATCAGTGGTGAGGAGATGACTCGGCTGGCAAAGGACTACATCAAGTTTGTGTTTTCAGGGTCCAAGAGTATCCGTTTGCAGCGTGCAATGTACAAGTGGGGAAGGTTCTTCCACACGTTGACTGAGAAGAAGGAATATGATAAGTTCTGGTTGGAGAAGGCCATTCTCACCACCCCAACTGCGTATGATTCACCTGAAAAGTACCGCAATCTTGTTAGATCTCTAGAAGCAGATTCTGATGACGATGACGATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

267

Amino Acids

29.4

Weight (kDa)

8.1

Isoelectric Point (pI)

49.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 67, 192, 390, 411, 748
AcsI RAATTY 1 cut(s) 365
AcuI CTGAAG 1 cut(s) 197
AfaI GTAC 4 cut(s) 174, 209, 635, 746
AfiI CCNNNNNNNGG 1 cut(s) 283
AflIII ACRYGT 1 cut(s) 657
AgsI TTSAA 3 cut(s) 130, 313, 356
AjnI CCWGG 1 cut(s) 278
Alw26I GTCTC 1 cut(s) 116
AlwNI CAGNNNCTG 1 cut(s) 779
AoxI GGCC 1 cut(s) 702
ApeKI GCWGC 1 cut(s) 622
ApoI RAATTY 1 cut(s) 365
Asp700I GAANNNNTTC 1 cut(s) 365
AspS9I GGNCC 1 cut(s) 603
AsuHPI GGTGA 5 cut(s) 275, 440, 563, 703, 726
AvaII GGWCC 1 cut(s) 603
BbvI GCAGC 1 cut(s) 634
BccI CCATC 2 cut(s) 61, 425
BciT130I CCWGG 1 cut(s) 280
BciVI GTATCC 1 cut(s) 623
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 4 cut(s) 33, 78, 506, 767
BfuI GTATCC 1 cut(s) 623
BglII AGATCT 1 cut(s) 761
BisI GCNGC 1 cut(s) 623
BlsI GCNGC 1 cut(s) 624
Bme1390I CCNGG 1 cut(s) 280
Bme18I GGWCC 1 cut(s) 603
BmgT120I GGNCC 1 cut(s) 603
BmiI GGNNCC 2 cut(s) 274, 604
BmrFI CCNGG 1 cut(s) 280
BmsI GCATC 1 cut(s) 45
BpuEI CTTGAG 1 cut(s) 311
BsaJI CCNNGG 2 cut(s) 115, 278
Bsc4I CCNNNNNNNGG 1 cut(s) 283
Bse3DI GCAATG 3 cut(s) 194, 306, 636
BseBI CCWGG 1 cut(s) 280
BseDI CCNNGG 2 cut(s) 115, 278
BseGI GGATG 3 cut(s) 20, 340, 490
BseLI CCNNNNNNNGG 1 cut(s) 283
BseMI GCAATG 3 cut(s) 194, 306, 636
BseMII CTCAG 1 cut(s) 657
BseRI GAGGAG 1 cut(s) 569
BseXI GCAGC 1 cut(s) 634
BsgI GTGCAG 1 cut(s) 204
BshFI GGCC 1 cut(s) 704
BslI CCNNNNNNNGG 1 cut(s) 283
BsmAI GTCTC 1 cut(s) 116
BsnI GGCC 1 cut(s) 704
Bsp1407I TGTACA 1 cut(s) 633
Bsp143I GATC 2 cut(s) 215, 761
BspACI CCGC 5 cut(s) 67, 192, 390, 411, 748
BspANI GGCC 1 cut(s) 704
BspCNI CTCAG 1 cut(s) 658
BspLI GGNNCC 2 cut(s) 274, 604
BsrDI GCAATG 3 cut(s) 194, 306, 636
BsrGI TGTACA 1 cut(s) 633
BssECI CCNNGG 2 cut(s) 115, 278
BssMI GATC 2 cut(s) 215, 761
BssT1I CCWWGG 1 cut(s) 115
Bst2UI CCWGG 1 cut(s) 280
Bst4CI ACNGT 3 cut(s) 10, 263, 514
Bst6I CTCTTC 1 cut(s) 369
BstAUI TGTACA 1 cut(s) 633
BstC8I GCNNGC 3 cut(s) 29, 570, 627
BstDEI CTNAG 2 cut(s) 204, 666
BstF5I GGATG 3 cut(s) 20, 340, 490
BstKTI GATC 2 cut(s) 218, 764
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 2 cut(s) 215, 761
BstMWI GCNNNNNNNGC 3 cut(s) 33, 346, 396
BstNI CCWGG 1 cut(s) 280
BstSCI CCNGG 1 cut(s) 278
BstV1I GCAGC 1 cut(s) 634
BstX2I RGATCY 1 cut(s) 761
BstYI RGATCY 1 cut(s) 761
BsuI GTATCC 1 cut(s) 623
BsuRI GGCC 1 cut(s) 704
BtsCI GGATG 3 cut(s) 20, 340, 490
BtsI GCAGTG 1 cut(s) 491
BtsIMutI CAGTG 2 cut(s) 491, 553
Cac8I GCNNGC 3 cut(s) 29, 570, 627
CaiI CAGNNNCTG 1 cut(s) 779
Cfr13I GGNCC 1 cut(s) 603
Csp6I GTAC 4 cut(s) 173, 208, 634, 745
CviAII CATG 1 cut(s) 481
CviJI RGCY 7 cut(s) 31, 170, 287, 444, 468, 568, 704
CviKI_1 RGCY 7 cut(s) 31, 170, 287, 444, 468, 568, 704
CviQI GTAC 4 cut(s) 173, 208, 634, 745
DdeI CTNAG 2 cut(s) 204, 666
DpnI GATC 2 cut(s) 217, 763
DpnII GATC 2 cut(s) 215, 761
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
EciI GGCGGA 2 cut(s) 56, 405
Eco130I CCWWGG 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 603
Eco57I CTGAAG 1 cut(s) 197
EcoRI GAATTC 1 cut(s) 365
EcoRII CCWGG 1 cut(s) 278
EcoT14I CCWWGG 1 cut(s) 115
ErhI CCWWGG 1 cut(s) 115
FaeI CATG 1 cut(s) 484
FaiI YATR 6 cut(s) 141, 372, 482, 534, 681, 729
FatI CATG 1 cut(s) 480
FauI CCCGC 1 cut(s) 185
Fnu4HI GCNGC 1 cut(s) 623
FokI GGATG 3 cut(s) 7, 347, 497
Fsp4HI GCNGC 1 cut(s) 623
FspBI CTAG 4 cut(s) 33, 78, 506, 767
GluI GCNGC 1 cut(s) 623
HaeIII GGCC 1 cut(s) 704
Hin1II CATG 1 cut(s) 484
HincII GTYRAC 1 cut(s) 663
HindII GTYRAC 1 cut(s) 663
HinfI GANTC 6 cut(s) 150, 477, 502, 562, 731, 776
HphI GGTGA 5 cut(s) 275, 440, 563, 703, 726
Hpy166II GTNNAC 2 cut(s) 538, 663
Hpy188I TCNGA 3 cut(s) 15, 47, 781
Hpy188III TCNNGA 2 cut(s) 290, 767
Hpy8I GTNNAC 2 cut(s) 538, 663
HpyAV CCTTC 7 cut(s) 277, 314, 399, 458, 639, 667, 694
HpyCH4III ACNGT 3 cut(s) 10, 263, 514
HpyCH4IV ACGT 2 cut(s) 343, 659
HpyCH4V TGCA 5 cut(s) 146, 221, 496, 622, 629
HpyF10VI GCNNNNNNNGC 3 cut(s) 33, 346, 396
HpyF3I CTNAG 2 cut(s) 204, 666
HpySE526I ACGT 2 cut(s) 343, 659
Hsp92II CATG 1 cut(s) 484
Kzo9I GATC 2 cut(s) 215, 761
Lsp1109I GCAGC 1 cut(s) 634
LweI GCATC 1 cut(s) 45
MaeI CTAG 4 cut(s) 33, 78, 506, 767
MaeII ACGT 2 cut(s) 343, 659
MalI GATC 2 cut(s) 217, 763
MboI GATC 2 cut(s) 215, 761
MboII GAAGA 5 cut(s) 190, 386, 470, 643, 682
MflI RGATCY 1 cut(s) 761
MluCI AATT 2 cut(s) 307, 365
MlyI GAGTC 1 cut(s) 556
MmeI TCCRAC 1 cut(s) 675
MnlI CCTC 5 cut(s) 80, 262, 325, 386, 547
MroXI GAANNNNTTC 1 cut(s) 365
MspR9I CCNGG 1 cut(s) 280
MvaI CCWGG 1 cut(s) 280
MwoI GCNNNNNNNGC 3 cut(s) 33, 346, 396
NdeII GATC 2 cut(s) 215, 761
NlaIII CATG 1 cut(s) 484
NlaIV GGNNCC 2 cut(s) 274, 604
NmeAIII GCCGAG 1 cut(s) 544
PdmI GAANNNNTTC 1 cut(s) 365
PfeI GAWTC 5 cut(s) 150, 477, 502, 731, 776
PkrI GCNGC 1 cut(s) 624
PleI GAGTC 1 cut(s) 556
PpsI GAGTC 1 cut(s) 556
Psp6I CCWGG 1 cut(s) 278
PspGI CCWGG 1 cut(s) 278
PspN4I GGNNCC 2 cut(s) 274, 604
PspPI GGNCC 1 cut(s) 603
PstNI CAGNNNCTG 1 cut(s) 779
PsuI RGATCY 1 cut(s) 761
RsaI GTAC 4 cut(s) 174, 209, 635, 746
RsaNI GTAC 4 cut(s) 173, 208, 634, 745
SatI GCNGC 1 cut(s) 623
Sau3AI GATC 2 cut(s) 215, 761
Sau96I GGNCC 1 cut(s) 603
SchI GAGTC 1 cut(s) 556
ScrFI CCNGG 1 cut(s) 280
SetI ASST 8 cut(s) 226, 346, 385, 397, 442, 650, 662, 739
SfaNI GCATC 1 cut(s) 45
SinI GGWCC 1 cut(s) 603
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 2 cut(s) 307, 365
SsiI CCGC 5 cut(s) 67, 192, 390, 411, 748
SspMI CTAG 4 cut(s) 33, 78, 506, 767
StyD4I CCNGG 1 cut(s) 278
StyI CCWWGG 1 cut(s) 115
TaaI ACNGT 3 cut(s) 10, 263, 514
TaiI ACGT 2 cut(s) 346, 662
TasI AATT 2 cut(s) 307, 365
TatI WGTACW 2 cut(s) 172, 633
TfiI GAWTC 5 cut(s) 150, 477, 502, 731, 776
TscAI CASTG 2 cut(s) 498, 553
TseI GCWGC 1 cut(s) 622
TspDTI ATGAA 6 cut(s) 17, 114, 270, 387, 477, 501
TspGWI ACGGA 2 cut(s) 72, 605
TspRI CASTG 2 cut(s) 498, 553
VpaK11BI GGWCC 1 cut(s) 603
XapI RAATTY 1 cut(s) 365
XbaI TCTAGA 1 cut(s) 766
XmnI GAANNNNTTC 1 cut(s) 365
XspI CTAG 4 cut(s) 33, 78, 506, 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.