Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003207

Physical Location & Seq

Genomic Coordinates Reverse (-)

10182824 .. 10184114

Gene Structure 1291 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0066100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGAACATGCAAGAAATACGCAACGCTGCTTTAGCTTATTACCAGAACTTATCAGATGAGCTAAAGCAGAAGGCATCAGAAAAATTTAAAGAAATGGATTCGAATGATAATGGCACAATAAGCATCAAGGAGTTCCGGCGGAGTTTGGGCAGGTCCGAGATCAAGCGCTGCTTCAAGTTGCTGGACAAAACCGGAGACGGTAAGTTGGATTTCAACGAATTCATCACTCTTTACTATCTCGTGGAGAGTGGGAGAGGGGTTTTCTGTGACGGCCATGGATGTAAGGCCTCCCCTTTTCTCAACGGACTGTATTTTACTTGCGTTGAGTGCTTCCATAACAACGAAGCTGCAACGTTCGATCTCTGCACCTCCTGCTACCGCGATGGAAAGTATATTCACAACCATGCCAGCTTTTTGGATAACTACGTCTTGCTGCGTTCCAAGGCAGCTTGTGAATCCACCACACCAACGGAAGATGATCATCTTGAGGTAAACGCTGCAGAATCTGCTCAACTAATTAGTGGAGGACTTAAAACTGTTTCCAATCTATTTAGTCGATCTGGGTCGTTTGAAATGATTGTAGATGATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

197

Amino Acids

22.2

Weight (kDa)

5.41

Isoelectric Point (pI)

43.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	23 - 79	8.5e-11	EF-hand domain pair
EF-hand_1	PF00036	53 - 77	3.1e-06	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43630 AT3G59640 AT3G59640
fragaria_vesca	FvH4_1g21910 FvH4_1g21910 FvH4_4g10550 FvH4_4g10550 FvH4_4g10550
malus_domestica	MD08G1231200.v1.1 MD10G1168700.v1.1 MD15G1424100.v1.1
prunus_persica	Prupe.1G205800_v2.0.a1 Prupe.1G570000_v2.0.a1
pyrus_communis	pycom08g20100 pycom15g37610
rosa_chinensis	RchiOBHm_Chr2g0115921 RchiOBHm_Chr4g0406201
rosa_laevigata	RLG00000008790 RLG00000018223
rosa_multiflora	Rmu_sc0012210.1_g000002 Rmu_sc0041989.1_g000001 Rmu_ssc0000197.1_g000008
rosa_roxburghii	Rroxscaffold_2G00127700 Rroxscaffold_2G00128510 Rroxscaffold_5G00350910
rosa_rugosa	Rorug02G0201300 Rorug04G0066100
rosa_samantha	Rh2AG257900 Rh2BG269000 Rh2CG264500 Rh2DG266200 Rh4AG136200 Rh4BG133600 Rh4CG144400 Rh4DG131100
rosa_wichuraiana	Rw2G020230 Rw4G011170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	141
AccII	CGCG	1 cut(s)	381
AciI	CCGC	2 cut(s)	139, 379
AclI	AACGTT	1 cut(s)	353
AcoI	YGGCCR	1 cut(s)	271
AcsI	RAATTY	2 cut(s)	83, 218
AfeI	AGCGCT	1 cut(s)	167
AgsI	TTSAA	3 cut(s)	175, 214, 572
AluBI	AGCT	5 cut(s)	35, 61, 347, 411, 449
AluI	AGCT	5 cut(s)	35, 61, 347, 411, 449
Alw26I	GTCTC	1 cut(s)	189
AlwNI	CAGNNNCTG	1 cut(s)	506
Aor51HI	AGCGCT	1 cut(s)	167
AoxI	GGCC	2 cut(s)	271, 285
ApeKI	GCWGC	6 cut(s)	26, 168, 347, 433, 446, 497
ApoI	RAATTY	2 cut(s)	83, 218
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	153
AsuII	TTCGAA	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	153
BauI	CACGAG	1 cut(s)	239
BbvI	GCAGC	6 cut(s)	13, 155, 334, 420, 458, 484
BccI	CCATC	1 cut(s)	377
BceAI	ACGGC	1 cut(s)	286
BclI	TGATCA	1 cut(s)	478
BcoDI	GTCTC	1 cut(s)	189
BfmI	CTRYAG	1 cut(s)	498
BfoI	RGCGCY	1 cut(s)	169
BfuAI	ACCTGC	1 cut(s)	141
BisI	GCNGC	6 cut(s)	27, 169, 348, 434, 447, 498
BlsI	GCNGC	6 cut(s)	28, 170, 349, 435, 448, 499
Bme18I	GGWCC	1 cut(s)	153
BmgT120I	GGNCC	1 cut(s)	153
BmsI	GCATC	2 cut(s)	83, 132
Bpu14I	TTCGAA	1 cut(s)	101
BpuEI	CTTGAG	1 cut(s)	506
BsaBI	GATNNNNATC	1 cut(s)	480
BsaJI	CCNNGG	2 cut(s)	274, 441
BsaWI	WCCGGW	1 cut(s)	191
Bse8I	GATNNNNATC	1 cut(s)	480
BseDI	CCNNGG	2 cut(s)	274, 441
BseGI	GGATG	1 cut(s)	284
BseJI	GATNNNNATC	1 cut(s)	480
BseXI	GCAGC	6 cut(s)	13, 155, 334, 420, 458, 484
BsgI	GTGCAG	1 cut(s)	349
Bsh1236I	CGCG	1 cut(s)	381
BshFI	GGCC	2 cut(s)	273, 287
BsiSI	CCGG	2 cut(s)	136, 192
BsmAI	GTCTC	1 cut(s)	189
BsmBI	CGTCTC	1 cut(s)	189
BsnI	GGCC	2 cut(s)	273, 287
Bsp119I	TTCGAA	1 cut(s)	101
Bsp143I	GATC	4 cut(s)	159, 358, 478, 557
Bsp19I	CCATGG	1 cut(s)	274
BspACI	CCGC	2 cut(s)	139, 379
BspANI	GGCC	2 cut(s)	273, 287
BspFNI	CGCG	1 cut(s)	381
BspMAI	CTGCAG	1 cut(s)	502
BspMI	ACCTGC	1 cut(s)	141
BspT104I	TTCGAA	1 cut(s)	101
BssECI	CCNNGG	2 cut(s)	274, 441
BssMI	GATC	4 cut(s)	159, 358, 478, 557
BssSI	CACGAG	1 cut(s)	239
BssT1I	CCWWGG	2 cut(s)	274, 441
Bst2BI	CACGAG	1 cut(s)	239
Bst4CI	ACNGT	3 cut(s)	200, 309, 538
BstAPI	GCANNNNNTGC	2 cut(s)	372, 506
BstBI	TTCGAA	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	409
BstDSI	CCRYGG	1 cut(s)	274
BstF5I	GGATG	1 cut(s)	284
BstFNI	CGCG	1 cut(s)	381
BstH2I	RGCGCY	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	4 cut(s)	162, 361, 481, 560
BstMAI	GTCTC	1 cut(s)	189
BstMBI	GATC	4 cut(s)	159, 358, 478, 557
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 120, 327, 372, 506
BstNSI	RCATGY	1 cut(s)	10
BstSFI	CTRYAG	1 cut(s)	498
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	6 cut(s)	13, 155, 334, 420, 458, 484
BstXI	CCANNNNNNTGG	1 cut(s)	415
BsuRI	GGCC	2 cut(s)	273, 287
BtgI	CCRYGG	1 cut(s)	274
BtgZI	GCGATG	1 cut(s)	396
BtsCI	GGATG	1 cut(s)	284
BveI	ACCTGC	1 cut(s)	141
Cac8I	GCNNGC	1 cut(s)	409
CaiI	CAGNNNCTG	1 cut(s)	506
CfoI	GCGC	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	153
CviAII	CATG	3 cut(s)	7, 275, 404
CviJI	RGCY	7 cut(s)	35, 61, 273, 287, 347, 411, 449
CviKI_1	RGCY	7 cut(s)	35, 61, 273, 287, 347, 411, 449
DpnI	GATC	4 cut(s)	161, 360, 480, 559
DpnII	GATC	4 cut(s)	159, 358, 478, 557
DraI	TTTAAA	1 cut(s)	88
EaeI	YGGCCR	1 cut(s)	271
EciI	GGCGGA	1 cut(s)	154
Eco130I	CCWWGG	2 cut(s)	274, 441
Eco147I	AGGCCT	1 cut(s)	287
Eco47I	GGWCC	1 cut(s)	153
Eco47III	AGCGCT	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	218
EcoT14I	CCWWGG	2 cut(s)	274, 441
ErhI	CCWWGG	2 cut(s)	274, 441
Esp3I	CGTCTC	1 cut(s)	189
FaeI	CATG	3 cut(s)	10, 278, 407
FaiI	YATR	5 cut(s)	8, 276, 336, 393, 405
FalI	AAGNNNNNCTT	2 cut(s)	155, 187
FatI	CATG	3 cut(s)	6, 274, 403
FbaI	TGATCA	1 cut(s)	478
Fnu4HI	GCNGC	6 cut(s)	27, 169, 348, 434, 447, 498
FokI	GGATG	1 cut(s)	291
Fsp4HI	GCNGC	6 cut(s)	27, 169, 348, 434, 447, 498
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	6 cut(s)	27, 169, 348, 434, 447, 498
HaeII	RGCGCY	1 cut(s)	169
HaeIII	GGCC	2 cut(s)	273, 287
HapII	CCGG	2 cut(s)	136, 192
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	3 cut(s)	10, 278, 407
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HinfI	GANTC	3 cut(s)	98, 455, 503
HpaII	CCGG	2 cut(s)	136, 192
Hpy166II	GTNNAC	1 cut(s)	493
Hpy188I	TCNGA	3 cut(s)	55, 79, 157
Hpy188III	TCNNGA	1 cut(s)	485
Hpy8I	GTNNAC	1 cut(s)	493
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	3 cut(s)	200, 309, 538
HpyCH4IV	ACGT	2 cut(s)	353, 426
HpyCH4V	TGCA	4 cut(s)	10, 350, 366, 500
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 120, 327, 372, 506
HpySE526I	ACGT	2 cut(s)	353, 426
Hsp92II	CATG	3 cut(s)	10, 278, 407
HspAI	GCGC	1 cut(s)	166
Ksp22I	TGATCA	1 cut(s)	478
Kzo9I	GATC	4 cut(s)	159, 358, 478, 557
LpnPI	CCDG	8 cut(s)	56, 136, 149, 167, 205, 385, 421, 546
Lsp1109I	GCAGC	6 cut(s)	13, 155, 334, 420, 458, 484
LweI	GCATC	2 cut(s)	83, 132
MaeII	ACGT	2 cut(s)	353, 426
MaeIII	GTNAC	1 cut(s)	266
MalI	GATC	4 cut(s)	161, 360, 480, 559
MboI	GATC	4 cut(s)	159, 358, 478, 557
MboII	GAAGA	1 cut(s)	485
MluCI	AATT	3 cut(s)	83, 218, 516
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	5 cut(s)	248, 298, 379, 481, 518
MseI	TTAA	2 cut(s)	87, 531
MslI	CAYNNNNRTG	1 cut(s)	402
MspI	CCGG	2 cut(s)	136, 192
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	5 cut(s)	32, 120, 327, 372, 506
NcoI	CCATGG	1 cut(s)	274
NdeII	GATC	4 cut(s)	159, 358, 478, 557
NlaIII	CATG	3 cut(s)	10, 278, 407
NmuCI	GTSAC	1 cut(s)	266
NspI	RCATGY	1 cut(s)	10
NspV	TTCGAA	1 cut(s)	101
PceI	AGGCCT	1 cut(s)	287
PfeI	GAWTC	3 cut(s)	98, 455, 503
PkrI	GCNGC	6 cut(s)	28, 170, 349, 435, 448, 499
Psp1406I	AACGTT	1 cut(s)	353
PspPI	GGNCC	1 cut(s)	153
PstI	CTGCAG	1 cut(s)	502
PstNI	CAGNNNCTG	1 cut(s)	506
RseI	CAYNNNNRTG	1 cut(s)	402
SaqAI	TTAA	2 cut(s)	87, 531
SatI	GCNGC	6 cut(s)	27, 169, 348, 434, 447, 498
Sau3AI	GATC	4 cut(s)	159, 358, 478, 557
Sau96I	GGNCC	1 cut(s)	153
SfaNI	GCATC	2 cut(s)	83, 132
SfcI	CTRYAG	1 cut(s)	498
SfuI	TTCGAA	1 cut(s)	101
SinI	GGWCC	1 cut(s)	153
SmiMI	CAYNNNNRTG	1 cut(s)	402
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
Sse9I	AATT	3 cut(s)	83, 218, 516
SseBI	AGGCCT	1 cut(s)	287
SsiI	CCGC	2 cut(s)	139, 379
StuI	AGGCCT	1 cut(s)	287
StyI	CCWWGG	2 cut(s)	274, 441
TaaI	ACNGT	3 cut(s)	200, 309, 538
TaiI	ACGT	2 cut(s)	356, 429
TaqI	TCGA	3 cut(s)	101, 357, 556
TasI	AATT	3 cut(s)	83, 218, 516
TfiI	GAWTC	3 cut(s)	98, 455, 503
Tru1I	TTAA	2 cut(s)	87, 531
Tru9I	TTAA	2 cut(s)	87, 531
TseFI	GTSAC	1 cut(s)	266
TseI	GCWGC	6 cut(s)	26, 168, 347, 433, 446, 497
Tsp45I	GTSAC	1 cut(s)	266
TspDTI	ATGAA	2 cut(s)	17, 211
TspGWI	ACGGA	2 cut(s)	318, 485
VpaK11BI	GGWCC	1 cut(s)	153
XapI	RAATTY	2 cut(s)	83, 218
XceI	RCATGY	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.