Prupe.1G570000_v2.0.a1

glycine-rich protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0003207
Physical Location & Seq
Forward (+)
46454838 .. 46458772
3935 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G570000.1

Sequence Viewer

Length: 753 bp
ATGATGAGCACCCTTCAGATTACTTCCTGCCAACCTTGCAACTACTTCAGAAACACATCTCAATCTCTCCGCTTCTCTTCGAAACCAAAAGTAATTCAGCACAAATGCATGGCCGTATTGAAGAACAAGCAATGGAGGCTTGTATCTAAGTACCACCAATCTGCTCGACCTGTCTGCTTATTGGGTGGCAAGGGAAAGAATGAAAGTGGTGGTGGTGATGAGGCTTCCCCCTGGAAGGCTCTTGAGAAAGCGATGGGTAATTTGAAGAAGGAAGGTTCAATAGAGGATGTATTACGTCAGCAGATTGAAAAGAAGGAATTCTATGAAGAGAGAGGCGCCGGCGGTGGTGGTGGTGGCGGTGGCAGTGGCAGGGGCGGTGGCAGCAGTGGTGATGGTGTAGGTGGCTCTGGTGGATCCGAGGATGAAGGCCTTGCTGGAATCTTGGATGAAACACTGCAAGTTATTCTAGCAACCGTTGGATTTATTTTTCTGTATTTTTACATCATCAGTGGTGAGGAGTGGACTCGGCTAGCAAAGGACTACCTCAAGTTTGTGTTTTCAGGGTCCAAGAGTATTCGTTTGAATCGTGCCATGTACAAATGGGGAAAGTTCTACAAGCGGCTGACTGAGAAGAAGGAGTATGATAAGTTCTGGTTGGAAAAGGCCATAATCACTACCCCAACTTGGTGGGATAGCCCTGAAAAGTACCGCCATATCGTTAGATCTAATTTAGCATCAGATTCAGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

251

Amino Acids

27.84

Weight (kDa)

9.26

Isoelectric Point (pI)

58.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 335
AciI CCGC 6 cut(s) 70, 342, 357, 375, 619, 709
AclWI GGATC 2 cut(s) 408, 421
AcoI YGGCCR 1 cut(s) 111
AcsI RAATTY 1 cut(s) 317
AcuI CTGAAG 1 cut(s) 31
AcyI GRCGYC 1 cut(s) 336
AfaI GTAC 3 cut(s) 152, 596, 707
AfiI CCNNNNNNNGG 2 cut(s) 235, 684
AgsI TTSAA 5 cut(s) 121, 265, 279, 308, 583
AjnI CCWGG 1 cut(s) 230
Alw21I GWGCWC 1 cut(s) 11
AlwI GGATC 2 cut(s) 408, 421
AoxI GGCC 3 cut(s) 111, 427, 663
ApeKI GCWGC 1 cut(s) 381
ApoI RAATTY 1 cut(s) 317
Asp700I GAANNNNTTC 1 cut(s) 317
AspLEI GCGC 1 cut(s) 338
AspS9I GGNCC 1 cut(s) 564
AsuHPI GGTGA 3 cut(s) 227, 401, 524
AsuII TTCGAA 1 cut(s) 80
AsuNHI GCTAGC 1 cut(s) 529
AvaII GGWCC 1 cut(s) 564
BamHI GGATCC 1 cut(s) 413
BanI GGYRCC 1 cut(s) 335
Bbv12I GWGCWC 1 cut(s) 11
BbvI GCAGC 1 cut(s) 393
BccI CCATC 2 cut(s) 247, 386
BceAI ACGGC 1 cut(s) 98
BcgI CGANNNNNNTGC 2 cut(s) 156, 190
BciT130I CCWGG 1 cut(s) 232
BfaI CTAG 2 cut(s) 467, 530
BfoI RGCGCY 1 cut(s) 339
BglII AGATCT 1 cut(s) 722
BisI GCNGC 2 cut(s) 382, 620
BlsI GCNGC 2 cut(s) 383, 621
Bme1390I CCNGG 1 cut(s) 232
Bme18I GGWCC 1 cut(s) 564
BmgT120I GGNCC 1 cut(s) 564
BmiI GGNNCC 3 cut(s) 337, 415, 565
BmrFI CCNGG 1 cut(s) 232
BmsI GCATC 1 cut(s) 743
BmtI GCTAGC 1 cut(s) 533
Bpu14I TTCGAA 1 cut(s) 80
BpuEI CTTGAG 2 cut(s) 263, 530
BsaHI GRCGYC 1 cut(s) 336
BsaJI CCNNGG 2 cut(s) 230, 417
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 684
Bse118I RCCGGY 1 cut(s) 338
Bse3DI GCAATG 1 cut(s) 137
BseBI CCWGG 1 cut(s) 232
BseDI CCNNGG 2 cut(s) 230, 417
BseGI GGATG 3 cut(s) 292, 427, 451
BseLI CCNNNNNNNGG 2 cut(s) 235, 684
BseMI GCAATG 1 cut(s) 137
BseMII CTCAG 1 cut(s) 618
BseRI GAGGAG 1 cut(s) 530
BseXI GCAGC 1 cut(s) 393
BshFI GGCC 3 cut(s) 113, 429, 665
BshNI GGYRCC 1 cut(s) 335
BsiHKAI GWGCWC 1 cut(s) 11
BsiSI CCGG 1 cut(s) 339
BslI CCNNNNNNNGG 2 cut(s) 235, 684
BsnI GGCC 3 cut(s) 113, 429, 665
Bsp119I TTCGAA 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 11
Bsp1407I TGTACA 1 cut(s) 594
Bsp143I GATC 2 cut(s) 413, 722
BspACI CCGC 6 cut(s) 70, 342, 357, 375, 619, 709
BspANI GGCC 3 cut(s) 113, 429, 665
BspCNI CTCAG 1 cut(s) 619
BspLI GGNNCC 3 cut(s) 337, 415, 565
BspOI GCTAGC 1 cut(s) 533
BspPI GGATC 2 cut(s) 408, 421
BspT104I TTCGAA 1 cut(s) 80
BspT107I GGYRCC 1 cut(s) 335
BsrDI GCAATG 1 cut(s) 137
BsrFI RCCGGY 1 cut(s) 338
BsrGI TGTACA 1 cut(s) 594
BssAI RCCGGY 1 cut(s) 338
BssECI CCNNGG 2 cut(s) 230, 417
BssMI GATC 2 cut(s) 413, 722
BssNI GRCGYC 1 cut(s) 336
Bst2UI CCWGG 1 cut(s) 232
Bst4CI ACNGT 1 cut(s) 475
Bst6I CTCTTC 2 cut(s) 82, 321
BstACI GRCGYC 1 cut(s) 336
BstAUI TGTACA 1 cut(s) 594
BstBI TTCGAA 1 cut(s) 80
BstC8I GCNNGC 2 cut(s) 340, 531
BstDEI CTNAG 2 cut(s) 147, 627
BstF5I GGATG 3 cut(s) 292, 427, 451
BstH2I RGCGCY 1 cut(s) 339
BstHHI GCGC 1 cut(s) 338
BstKTI GATC 2 cut(s) 416, 725
BstMBI GATC 2 cut(s) 413, 722
BstMWI GCNNNNNNNGC 3 cut(s) 36, 136, 381
BstNI CCWGG 1 cut(s) 232
BstSCI CCNGG 1 cut(s) 230
BstV1I GCAGC 1 cut(s) 393
BstX2I RGATCY 2 cut(s) 413, 722
BstXI CCANNNNNNTGG 1 cut(s) 687
BstYI RGATCY 2 cut(s) 413, 722
BsuRI GGCC 3 cut(s) 113, 429, 665
BtgZI GCGATG 1 cut(s) 266
BtsCI GGATG 3 cut(s) 292, 427, 451
BtsI GCAGTG 3 cut(s) 370, 391, 452
BtsIMutI CAGTG 4 cut(s) 370, 391, 452, 514
Cac8I GCNNGC 2 cut(s) 340, 531
CfoI GCGC 1 cut(s) 338
Cfr10I RCCGGY 1 cut(s) 338
Cfr13I GGNCC 1 cut(s) 564
Csp6I GTAC 3 cut(s) 151, 595, 706
CviAII CATG 2 cut(s) 109, 592
CviQI GTAC 3 cut(s) 151, 595, 706
DdeI CTNAG 2 cut(s) 147, 627
DinI GGCGCC 1 cut(s) 337
DpnI GATC 2 cut(s) 415, 724
DpnII GATC 2 cut(s) 413, 722
EaeI YGGCCR 1 cut(s) 111
Eam1104I CTCTTC 2 cut(s) 82, 321
EarI CTCTTC 2 cut(s) 82, 321
Eco147I AGGCCT 1 cut(s) 429
Eco47I GGWCC 1 cut(s) 564
Eco57I CTGAAG 1 cut(s) 31
EcoRI GAATTC 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 230
EcoT22I ATGCAT 1 cut(s) 110
EgeI GGCGCC 1 cut(s) 337
EheI GGCGCC 1 cut(s) 337
FaeI CATG 2 cut(s) 112, 595
FaiI YATR 6 cut(s) 110, 324, 593, 642, 668, 714
FatI CATG 2 cut(s) 108, 591
Fnu4HI GCNGC 2 cut(s) 382, 620
FokI GGATG 3 cut(s) 299, 434, 458
Fsp4HI GCNGC 2 cut(s) 382, 620
FspBI CTAG 2 cut(s) 467, 530
GlaI GCGC 1 cut(s) 337
GluI GCNGC 2 cut(s) 382, 620
HaeII RGCGCY 1 cut(s) 339
HaeIII GGCC 3 cut(s) 113, 429, 665
HapII CCGG 1 cut(s) 339
HhaI GCGC 1 cut(s) 338
Hin1I GRCGYC 1 cut(s) 336
Hin1II CATG 2 cut(s) 112, 595
Hin6I GCGC 1 cut(s) 336
HinP1I GCGC 1 cut(s) 336
HinfI GANTC 4 cut(s) 438, 523, 583, 740
HpaII CCGG 1 cut(s) 339
HphI GGTGA 3 cut(s) 227, 401, 524
Hpy166II GTNNAC 1 cut(s) 522
Hpy188I TCNGA 5 cut(s) 18, 50, 418, 739, 745
Hpy188III TCNNGA 1 cut(s) 242
Hpy8I GTNNAC 1 cut(s) 522
HpyAV CCTTC 7 cut(s) 23, 229, 262, 266, 307, 419, 628
HpyCH4III ACNGT 1 cut(s) 475
HpyCH4IV ACGT 1 cut(s) 295
HpyCH4V TGCA 3 cut(s) 39, 108, 457
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 136, 381
HpyF3I CTNAG 2 cut(s) 147, 627
HpySE526I ACGT 1 cut(s) 295
Hsp92I GRCGYC 1 cut(s) 336
Hsp92II CATG 2 cut(s) 112, 595
HspAI GCGC 1 cut(s) 336
KasI GGCGCC 1 cut(s) 335
KroI GCCGGC 1 cut(s) 338
KroNI GCCGGC 1 cut(s) 340
Kzo9I GATC 2 cut(s) 413, 722
Lsp1109I GCAGC 1 cut(s) 393
LweI GCATC 1 cut(s) 743
MaeI CTAG 2 cut(s) 467, 530
MaeII ACGT 1 cut(s) 295
MalI GATC 2 cut(s) 415, 724
MboI GATC 2 cut(s) 413, 722
MboII GAAGA 5 cut(s) 69, 133, 277, 338, 643
MflI RGATCY 2 cut(s) 413, 722
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 4 cut(s) 93, 259, 317, 727
Mly113I GGCGCC 1 cut(s) 336
MlyI GAGTC 1 cut(s) 517
MmeI TCCRAC 2 cut(s) 457, 636
MnlI CCTC 7 cut(s) 129, 214, 277, 326, 412, 508, 554
Mph1103I ATGCAT 1 cut(s) 110
MreI CGCCGGCG 1 cut(s) 338
MroNI GCCGGC 1 cut(s) 338
MroXI GAANNNNTTC 1 cut(s) 317
MspI CCGG 1 cut(s) 339
MspR9I CCNGG 1 cut(s) 232
MvaI CCWGG 1 cut(s) 232
MwoI GCNNNNNNNGC 3 cut(s) 36, 136, 381
NaeI GCCGGC 1 cut(s) 340
NarI GGCGCC 1 cut(s) 336
NdeII GATC 2 cut(s) 413, 722
NgoMIV GCCGGC 1 cut(s) 338
NheI GCTAGC 1 cut(s) 529
NlaIII CATG 2 cut(s) 112, 595
NlaIV GGNNCC 3 cut(s) 337, 415, 565
NmeAIII GCCGAG 1 cut(s) 505
NsiI ATGCAT 1 cut(s) 110
NspV TTCGAA 1 cut(s) 80
PceI AGGCCT 1 cut(s) 429
PcsI WCGNNNNNNNCGW 1 cut(s) 583
PdiI GCCGGC 1 cut(s) 340
PdmI GAANNNNTTC 1 cut(s) 317
PfeI GAWTC 3 cut(s) 438, 583, 740
PkrI GCNGC 2 cut(s) 383, 621
PleI GAGTC 1 cut(s) 517
PluTI GGCGCC 1 cut(s) 339
PpsI GAGTC 1 cut(s) 517
Psp6I CCWGG 1 cut(s) 230
PspGI CCWGG 1 cut(s) 230
PspN4I GGNNCC 3 cut(s) 337, 415, 565
PspPI GGNCC 1 cut(s) 564
PsrI GAACNNNNNNTAC 2 cut(s) 632, 664
PsuI RGATCY 2 cut(s) 413, 722
RsaI GTAC 3 cut(s) 152, 596, 707
RsaNI GTAC 3 cut(s) 151, 595, 706
SatI GCNGC 2 cut(s) 382, 620
Sau3AI GATC 2 cut(s) 413, 722
Sau96I GGNCC 1 cut(s) 564
SchI GAGTC 1 cut(s) 517
ScrFI CCNGG 1 cut(s) 232
SduI GDGCHC 1 cut(s) 11
SetI ASST 6 cut(s) 37, 172, 277, 298, 403, 546
SfaNI GCATC 1 cut(s) 743
SfoI GGCGCC 1 cut(s) 337
SfuI TTCGAA 1 cut(s) 80
SgrAI CRCCGGYG 1 cut(s) 338
SinI GGWCC 1 cut(s) 564
SmlI CTYRAG 2 cut(s) 242, 545
SmoI CTYRAG 2 cut(s) 242, 545
Sse9I AATT 4 cut(s) 93, 259, 317, 727
SseBI AGGCCT 1 cut(s) 429
SsiI CCGC 6 cut(s) 70, 342, 357, 375, 619, 709
SspDI GGCGCC 1 cut(s) 335
SspMI CTAG 2 cut(s) 467, 530
StuI AGGCCT 1 cut(s) 429
StyD4I CCNGG 1 cut(s) 230
TaaI ACNGT 1 cut(s) 475
TaiI ACGT 1 cut(s) 298
TaqI TCGA 2 cut(s) 80, 166
TasI AATT 4 cut(s) 93, 259, 317, 727
TatI WGTACW 1 cut(s) 594
TauI GCSGC 1 cut(s) 622
TfiI GAWTC 3 cut(s) 438, 583, 740
TscAI CASTG 4 cut(s) 370, 391, 459, 514
TseI GCWGC 1 cut(s) 381
TspDTI ATGAA 4 cut(s) 216, 339, 438, 462
TspRI CASTG 4 cut(s) 370, 391, 459, 514
VpaK11BI GGWCC 1 cut(s) 564
XapI RAATTY 1 cut(s) 317
XmnI GAANNNNTTC 1 cut(s) 317
XspI CTAG 2 cut(s) 467, 530
Zsp2I ATGCAT 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.