Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003207

Physical Location & Seq

Genomic Coordinates Reverse (-)

26071847 .. 26074256

Gene Structure 2410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1168700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAACACCGTTCAGATAACATCCTGCCAGCCTAGCATCTATTTCAGAAACCCATCTCAATCTCTCCGCCTCTATTCTAGTCCGTGTTTGCTTCCAAATCGTGCTAAATGTCTCCTTGGAACTTCATTGAAACCAAAACATAATGCACGAATCCAGCAACAATGCGTGGCTGTACTGAAGAACCAGCAATGCGGGGTCGTATCTAAGTACCACCGATCTGCACCTGTCTGTTTATTGGGTGGCAAGGGAAAGAATGAAAACGGTGATGAGGGTTCCCCCTGGAAGGCTCTTGAGAAAGCAATGGGTAATTTCAAAAAGGAAGGGTCAATAGAGGATGTGCTACGTCAGCAGATTGAAAAGAAACGAATTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

125

Amino Acids

13.83

Weight (kDa)

9.76

Isoelectric Point (pI)

58.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43630 AT3G59640 AT3G59640
fragaria_vesca	FvH4_1g21910 FvH4_1g21910 FvH4_4g10550 FvH4_4g10550 FvH4_4g10550
malus_domestica	MD08G1231200.v1.1 MD10G1168700.v1.1 MD15G1424100.v1.1
prunus_persica	Prupe.1G205800_v2.0.a1 Prupe.1G570000_v2.0.a1
pyrus_communis	pycom08g20100 pycom15g37610
rosa_chinensis	RchiOBHm_Chr2g0115921 RchiOBHm_Chr4g0406201
rosa_laevigata	RLG00000008790 RLG00000018223
rosa_multiflora	Rmu_sc0012210.1_g000002 Rmu_sc0041989.1_g000001 Rmu_ssc0000197.1_g000008
rosa_roxburghii	Rroxscaffold_2G00127700 Rroxscaffold_2G00128510 Rroxscaffold_5G00350910
rosa_rugosa	Rorug02G0201300 Rorug04G0066100
rosa_samantha	Rh2AG257900 Rh2BG269000 Rh2CG264500 Rh2DG266200 Rh4AG136200 Rh4BG133600 Rh4CG144400 Rh4DG131100
rosa_wichuraiana	Rw2G020230 Rw4G011170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	67, 192
AcsI	RAATTY	1 cut(s)	366
AcuI	CTGAAG	1 cut(s)	197
AfaI	GTAC	2 cut(s)	174, 209
AfiI	CCNNNNNNNGG	1 cut(s)	283
AgsI	TTSAA	3 cut(s)	130, 313, 356
AjnI	CCWGG	1 cut(s)	278
Alw26I	GTCTC	1 cut(s)	116
ApoI	RAATTY	1 cut(s)	366
AsuHPI	GGTGA	1 cut(s)	275
BccI	CCATC	1 cut(s)	61
BciT130I	CCWGG	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	2 cut(s)	33, 78
Bme1390I	CCNGG	1 cut(s)	280
BmiI	GGNNCC	1 cut(s)	274
BmrFI	CCNGG	1 cut(s)	280
BmsI	GCATC	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	311
BsaJI	CCNNGG	2 cut(s)	115, 278
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse3DI	GCAATG	2 cut(s)	194, 306
BseBI	CCWGG	1 cut(s)	280
BseDI	CCNNGG	2 cut(s)	115, 278
BseGI	GGATG	2 cut(s)	20, 340
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseMI	GCAATG	2 cut(s)	194, 306
BsgI	GTGCAG	1 cut(s)	204
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmAI	GTCTC	1 cut(s)	116
Bsp143I	GATC	1 cut(s)	215
BspACI	CCGC	2 cut(s)	67, 192
BspLI	GGNNCC	1 cut(s)	274
BsrDI	GCAATG	2 cut(s)	194, 306
BssECI	CCNNGG	2 cut(s)	115, 278
BssMI	GATC	1 cut(s)	215
BssT1I	CCWWGG	1 cut(s)	115
Bst2UI	CCWGG	1 cut(s)	280
Bst4CI	ACNGT	2 cut(s)	10, 263
BstC8I	GCNNGC	1 cut(s)	29
BstDEI	CTNAG	1 cut(s)	204
BstF5I	GGATG	2 cut(s)	20, 340
BstKTI	GATC	1 cut(s)	218
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	1 cut(s)	215
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 346
BstNI	CCWGG	1 cut(s)	280
BstSCI	CCNGG	1 cut(s)	278
BtsCI	GGATG	2 cut(s)	20, 340
Cac8I	GCNNGC	1 cut(s)	29
Csp6I	GTAC	2 cut(s)	173, 208
CviJI	RGCY	3 cut(s)	31, 170, 287
CviKI_1	RGCY	3 cut(s)	31, 170, 287
CviQI	GTAC	2 cut(s)	173, 208
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	1 cut(s)	217
DpnII	GATC	1 cut(s)	215
EciI	GGCGGA	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	197
EcoRI	GAATTC	1 cut(s)	366
EcoRII	CCWGG	1 cut(s)	278
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
FaiI	YATR	2 cut(s)	141, 373
FauI	CCCGC	1 cut(s)	185
FokI	GGATG	2 cut(s)	7, 347
FspBI	CTAG	2 cut(s)	33, 78
HinfI	GANTC	1 cut(s)	150
HphI	GGTGA	1 cut(s)	275
Hpy188I	TCNGA	2 cut(s)	15, 47
Hpy188III	TCNNGA	1 cut(s)	290
HpyAV	CCTTC	2 cut(s)	277, 314
HpyCH4III	ACNGT	2 cut(s)	10, 263
HpyCH4IV	ACGT	1 cut(s)	343
HpyCH4V	TGCA	2 cut(s)	146, 221
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 346
HpyF3I	CTNAG	1 cut(s)	204
HpySE526I	ACGT	1 cut(s)	343
Kzo9I	GATC	1 cut(s)	215
LpnPI	CCDG	7 cut(s)	37, 41, 167, 197, 237, 265, 292
LweI	GCATC	1 cut(s)	45
MaeI	CTAG	2 cut(s)	33, 78
MaeII	ACGT	1 cut(s)	343
MalI	GATC	1 cut(s)	217
MboI	GATC	1 cut(s)	215
MboII	GAAGA	1 cut(s)	190
MluCI	AATT	2 cut(s)	307, 366
MnlI	CCTC	3 cut(s)	80, 262, 325
MspR9I	CCNGG	1 cut(s)	280
MvaI	CCWGG	1 cut(s)	280
MwoI	GCNNNNNNNGC	2 cut(s)	33, 346
NdeII	GATC	1 cut(s)	215
NlaIV	GGNNCC	1 cut(s)	274
PfeI	GAWTC	1 cut(s)	150
Psp6I	CCWGG	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	278
PspN4I	GGNNCC	1 cut(s)	274
RsaI	GTAC	2 cut(s)	174, 209
RsaNI	GTAC	2 cut(s)	173, 208
Sau3AI	GATC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	280
SetI	ASST	2 cut(s)	226, 346
SfaNI	GCATC	1 cut(s)	45
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	2 cut(s)	307, 366
SsiI	CCGC	2 cut(s)	67, 192
SspMI	CTAG	2 cut(s)	33, 78
StyD4I	CCNGG	1 cut(s)	278
StyI	CCWWGG	1 cut(s)	115
TaaI	ACNGT	2 cut(s)	10, 263
TaiI	ACGT	1 cut(s)	346
TasI	AATT	2 cut(s)	307, 366
TatI	WGTACW	1 cut(s)	172
TfiI	GAWTC	1 cut(s)	150
TspDTI	ATGAA	3 cut(s)	17, 114, 270
TspGWI	ACGGA	1 cut(s)	72
XapI	RAATTY	1 cut(s)	366
XspI	CTAG	2 cut(s)	33, 78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.