Rh6DG391600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0008025
Physical Location & Seq
Reverse (-)
58391789 .. 58406466
14678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG391600.1

Sequence Viewer

Length: 1269 bp
ATGGCCTTTAGACATATAGAGAAGGTGATCCACGGTGCGAGGCATGTAATGGGTAAGCGAAATGGAGCCCTGCATTTGAATGTGATGCTATACCATGGCTCAGAGGAGTCTCGTGGGGAGCCTCTGTCCCTGGAATGGTATAGAAAGGCATTTCCGAAGTTAACGAAACTGACCCGGTTGCTTAAAGATGTGGATTTGATTGATGGGAGGCTTGTTAGTATCAATGATGGTTCGATTATCGTGAATGGCCGAGCTGAACACAAAATGGTTGCTTTCAAGTCACTTGCCAGGGTCTTTGTTGGGTCTCCATTGGTTCAGCAGACGCTGTGGAGTGATGTGGTGGCGTGGGCTGGCGGCAGAGGATGTGACCCTTTTGTCTGTTTCAGTAAACCAAGGGAAAGAGAGGCCTTGGTTGTGAAGTCAATGTCTGTAGTGGGTAGCATTCTAAACATTACTGCACAGCAGAGGCAGACGGTGCGTGTGAAGATATGTCCGCAGGTCACGCAGCACCGTATATGGACCGGCACGCTTGAGGAGATACTAAATGGATTGAAATGTGAGTTGGAGGTTGTAGATTATCAGTGCCCGAGCAAAGGGACGAGGATTGGTCAGCAGATAGTTTCTAGCTGTCTGAAGTTCTTGGCTGACACATCCATTTCATATGATGATGACTCGGCTTCGTGGATGCGCCTTTCAACTGCAAAGATTACCGACTCTTCTGGTTTGCAAAAATGGGAAGACCTGCTTGAGATGTTCAATGACCTTATTGATTGTTTGAAAAACGACAGGGAGTTACTTCTTTATGTGACGAAGCTTGAGGTCATGAAAGAGGGGCTGTCTCAAATCAAGGATGTGTTGGTTGATAAAAGTATTGGATTCAAGGAAGTACGACATCAAGAAAGCCTAGTGCAGAAGAAGCTGTCCAAGACATTGGGTCATTCATCCCAGTGTTTGTTCACACTCTTGTTATATTACCTCTATGGGCATGTTAGAGATATTGAAGTAGACTTATCTGGTGGTCTTTATAGCATTAGTGACAAGAGTCTCTTTCTGTGCATGGGAAGGATTGTGACTTCAGATGATGAGACAATGATTTGGAGTGGGGTGAAGCAGTTGGACAGGGCTCTCGGTCTTTTCAAGTTTGTATGGGAAACAGCAGGAATGGAAGGAGTTTTGCAATTGCAAGGCCATATATGGTGTGTAGGAGCTGAGAGCAGAACACTTACATATAGAGGAAACACATTCTTTGTACACGGAATTCATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

422

Amino Acids

47.63

Weight (kDa)

8.42

Isoelectric Point (pI)

29.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 374
Acc36I ACCTGC 2 cut(s) 487, 750
AccI GTMKAC 1 cut(s) 1005
AciI CCGC 2 cut(s) 354, 494
AclWI GGATC 1 cut(s) 22
AcoI YGGCCR 1 cut(s) 247
AcsI RAATTY 1 cut(s) 1257
AcuI CTGAAG 2 cut(s) 653, 1059
AfaI GTAC 2 cut(s) 888, 1251
AfiI CCNNNNNNNGG 2 cut(s) 135, 593
AgsI TTSAA 9 cut(s) 79, 277, 553, 696, 757, 778, 880, 1001, 1138
AhdI GACNNNNNGTC 1 cut(s) 933
AjnI CCWGG 2 cut(s) 129, 287
AjuI GAANNNNNNNTTGG 2 cut(s) 545, 577
AluBI AGCT 5 cut(s) 254, 627, 814, 919, 1208
AluI AGCT 5 cut(s) 254, 627, 814, 919, 1208
Alw26I GTCTC 5 cut(s) 114, 309, 843, 1049, 1079
AlwI GGATC 1 cut(s) 22
AlwNI CAGNNNCTG 1 cut(s) 325
Ama87I CYCGRG 1 cut(s) 586
AoxI GGCC 4 cut(s) 3, 247, 405, 1186
ApeKI GCWGC 1 cut(s) 505
ApoI RAATTY 1 cut(s) 1257
AspLEI GCGC 1 cut(s) 690
AspS9I GGNCC 1 cut(s) 519
AsuC2I CCSGG 1 cut(s) 175
AsuHPI GGTGA 2 cut(s) 37, 1117
AvaI CYCGRG 1 cut(s) 586
AvaII GGWCC 1 cut(s) 519
BaeGI GKGCMC 1 cut(s) 587
BanII GRGCYC 2 cut(s) 70, 1126
BauI CACGAG 1 cut(s) 111
BbsI GAAGAC 1 cut(s) 744
BbvI GCAGC 1 cut(s) 517
BccI CCATC 2 cut(s) 197, 221
BciT130I CCWGG 2 cut(s) 131, 289
BcnI CCSGG 1 cut(s) 175
BcoDI GTCTC 5 cut(s) 114, 309, 843, 1049, 1079
BfaI CTAG 2 cut(s) 624, 905
BfmI CTRYAG 1 cut(s) 429
BfuAI ACCTGC 2 cut(s) 487, 750
BisI GCNGC 2 cut(s) 355, 506
BlsI GCNGC 2 cut(s) 356, 507
Bme1390I CCNGG 3 cut(s) 131, 175, 289
Bme18I GGWCC 1 cut(s) 519
BmeRI GACNNNNNGTC 1 cut(s) 933
BmeT110I CYCGRG 1 cut(s) 586
BmgT120I GGNCC 1 cut(s) 519
BmiI GGNNCC 2 cut(s) 67, 120
BmrFI CCNGG 3 cut(s) 131, 175, 289
BmrI ACTGGG 1 cut(s) 940
BmsI GCATC 2 cut(s) 75, 675
BmuI ACTGGG 1 cut(s) 940
BoxI GACNNNNGTC 1 cut(s) 1041
BpiI GAAGAC 1 cut(s) 744
BpuEI CTTGAG 3 cut(s) 551, 767, 836
BpuMI CCSGG 1 cut(s) 175
BsaI GGTCTC 1 cut(s) 309
BsaJI CCNNGG 6 cut(s) 31, 94, 129, 288, 392, 408
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 593
Bse118I RCCGGY 1 cut(s) 521
Bse1I ACTGG 1 cut(s) 946
BseBI CCWGG 2 cut(s) 131, 289
BseDI CCNNGG 6 cut(s) 31, 94, 129, 288, 392, 408
BseGI GGATG 5 cut(s) 368, 650, 690, 856, 941
BseLI CCNNNNNNNGG 2 cut(s) 135, 593
BseMII CTCAG 2 cut(s) 114, 1200
BseNI ACTGG 1 cut(s) 946
BseRI GAGGAG 2 cut(s) 119, 548
BseSI GKGCMC 1 cut(s) 587
BseXI GCAGC 1 cut(s) 517
BsgI GTGCAG 2 cut(s) 441, 929
BshFI GGCC 4 cut(s) 5, 249, 407, 1188
BsiHKCI CYCGRG 1 cut(s) 586
BsiSI CCGG 2 cut(s) 175, 522
BslFI GGGAC 2 cut(s) 112, 610
BslI CCNNNNNNNGG 2 cut(s) 135, 593
BsmAI GTCTC 5 cut(s) 114, 309, 843, 1049, 1079
BsmFI GGGAC 2 cut(s) 112, 610
BsmI GAATGC 1 cut(s) 441
BsnI GGCC 4 cut(s) 5, 249, 407, 1188
Bso31I GGTCTC 1 cut(s) 309
BsoBI CYCGRG 1 cut(s) 586
Bsp1286I GDGCHC 3 cut(s) 70, 587, 1126
Bsp1407I TGTACA 1 cut(s) 1249
Bsp143I GATC 1 cut(s) 27
Bsp19I CCATGG 1 cut(s) 94
BspACI CCGC 2 cut(s) 354, 494
BspANI GGCC 4 cut(s) 5, 249, 407, 1188
BspCNI CTCAG 2 cut(s) 113, 1201
BspHI TCATGA 1 cut(s) 822
BspLI GGNNCC 2 cut(s) 67, 120
BspMI ACCTGC 2 cut(s) 487, 750
BspPI GGATC 1 cut(s) 22
BspTNI GGTCTC 1 cut(s) 309
BsrFI RCCGGY 1 cut(s) 521
BsrGI TGTACA 1 cut(s) 1249
BsrI ACTGG 1 cut(s) 946
BssAI RCCGGY 1 cut(s) 521
BssECI CCNNGG 6 cut(s) 31, 94, 129, 288, 392, 408
BssMI GATC 1 cut(s) 27
BssSI CACGAG 1 cut(s) 111
BssT1I CCWWGG 3 cut(s) 94, 392, 408
Bst2BI CACGAG 1 cut(s) 111
Bst2UI CCWGG 2 cut(s) 131, 289
Bst4CI ACNGT 3 cut(s) 35, 475, 512
Bst6I CTCTTC 1 cut(s) 721
BstAPI GCANNNNNTGC 1 cut(s) 475
BstAUI TGTACA 1 cut(s) 1249
BstC8I GCNNGC 2 cut(s) 352, 527
BstDEI CTNAG 2 cut(s) 100, 1209
BstDSI CCRYGG 2 cut(s) 31, 94
BstF5I GGATG 5 cut(s) 368, 650, 690, 856, 941
BstHHI GCGC 1 cut(s) 690
BstKTI GATC 1 cut(s) 30
BstMAI GTCTC 5 cut(s) 114, 309, 843, 1049, 1079
BstMBI GATC 1 cut(s) 27
BstMWI GCNNNNNNNGC 3 cut(s) 475, 502, 916
BstNI CCWGG 2 cut(s) 131, 289
BstNSI RCATGY 2 cut(s) 47, 989
BstPAI GACNNNNGTC 1 cut(s) 1041
BstSCI CCNGG 3 cut(s) 129, 173, 287
BstSFI CTRYAG 1 cut(s) 429
BstSLI GKGCMC 1 cut(s) 587
BstV1I GCAGC 1 cut(s) 517
BstV2I GAAGAC 1 cut(s) 744
BstXI CCANNNNNNTGG 1 cut(s) 931
BsuRI GGCC 4 cut(s) 5, 249, 407, 1188
BtgI CCRYGG 2 cut(s) 31, 94
BtsCI GGATG 5 cut(s) 368, 650, 690, 856, 941
BtsIMutI CAGTG 2 cut(s) 587, 953
BveI ACCTGC 2 cut(s) 487, 750
Cac8I GCNNGC 2 cut(s) 352, 527
CaiI CAGNNNCTG 1 cut(s) 325
CciI TCATGA 1 cut(s) 822
CfoI GCGC 1 cut(s) 690
Cfr10I RCCGGY 1 cut(s) 521
Cfr13I GGNCC 1 cut(s) 519
CseI GACGC 1 cut(s) 331
Csp6I GTAC 2 cut(s) 887, 1250
CviAII CATG 6 cut(s) 44, 95, 823, 986, 1057, 1262
CviQI GTAC 2 cut(s) 887, 1250
DdeI CTNAG 2 cut(s) 100, 1209
DpnI GATC 1 cut(s) 29
DpnII GATC 1 cut(s) 27
DrdI GACNNNNNNGTC 1 cut(s) 374
DriI GACNNNNNGTC 1 cut(s) 933
DseDI GACNNNNNNGTC 1 cut(s) 374
EaeI YGGCCR 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 721
Eam1105I GACNNNNNGTC 1 cut(s) 933
EarI CTCTTC 1 cut(s) 721
Eco130I CCWWGG 3 cut(s) 94, 392, 408
Eco147I AGGCCT 1 cut(s) 407
Eco24I GRGCYC 2 cut(s) 70, 1126
Eco31I GGTCTC 1 cut(s) 309
Eco47I GGWCC 1 cut(s) 519
Eco57I CTGAAG 2 cut(s) 653, 1059
Eco88I CYCGRG 1 cut(s) 586
EcoRI GAATTC 1 cut(s) 1257
EcoRII CCWGG 2 cut(s) 129, 287
EcoT14I CCWWGG 3 cut(s) 94, 392, 408
EcoT38I GRGCYC 2 cut(s) 70, 1126
ErhI CCWWGG 3 cut(s) 94, 392, 408
FaeI CATG 6 cut(s) 47, 98, 826, 989, 1060, 1265
FalI AAGNNNNNCTT 4 cut(s) 729, 761, 1031, 1063
FaqI GGGAC 2 cut(s) 112, 610
FatI CATG 6 cut(s) 43, 94, 822, 985, 1056, 1261
FauNDI CATATG 1 cut(s) 661
FblI GTMKAC 1 cut(s) 1005
Fnu4HI GCNGC 2 cut(s) 355, 506
FokI GGATG 5 cut(s) 375, 637, 697, 863, 928
FriOI GRGCYC 2 cut(s) 70, 1126
Fsp4HI GCNGC 2 cut(s) 355, 506
FspBI CTAG 2 cut(s) 624, 905
GlaI GCGC 1 cut(s) 689
GluI GCNGC 2 cut(s) 355, 506
HaeIII GGCC 4 cut(s) 5, 249, 407, 1188
HapII CCGG 2 cut(s) 175, 522
HgaI GACGC 1 cut(s) 331
HhaI GCGC 1 cut(s) 690
Hin1II CATG 6 cut(s) 47, 98, 826, 989, 1060, 1265
Hin6I GCGC 1 cut(s) 688
HinP1I GCGC 1 cut(s) 688
HincII GTYRAC 1 cut(s) 162
HindII GTYRAC 1 cut(s) 162
HindIII AAGCTT 1 cut(s) 812
HinfI GANTC 5 cut(s) 107, 671, 713, 876, 1042
HpaI GTTAAC 1 cut(s) 162
HpaII CCGG 2 cut(s) 175, 522
HphI GGTGA 2 cut(s) 37, 1117
Hpy166II GTNNAC 5 cut(s) 162, 389, 957, 1006, 1252
Hpy188I TCNGA 4 cut(s) 103, 156, 633, 1078
Hpy188III TCNNGA 3 cut(s) 241, 823, 896
Hpy8I GTNNAC 5 cut(s) 162, 389, 957, 1006, 1252
HpyAV CCTTC 3 cut(s) 16, 1056, 1160
HpyCH4III ACNGT 3 cut(s) 35, 475, 512
HpyCH4V TGCA 8 cut(s) 73, 458, 701, 727, 910, 1056, 1177, 1183
HpyF10VI GCNNNNNNNGC 3 cut(s) 475, 502, 916
HpyF3I CTNAG 2 cut(s) 100, 1209
Hsp92II CATG 6 cut(s) 47, 98, 826, 989, 1060, 1265
HspAI GCGC 1 cut(s) 688
KspAI GTTAAC 1 cut(s) 162
Kzo9I GATC 1 cut(s) 27
LmnI GCTCC 3 cut(s) 65, 118, 1205
Lsp1109I GCAGC 1 cut(s) 517
LweI GCATC 2 cut(s) 75, 675
MaeI CTAG 2 cut(s) 624, 905
MaeIII GTNAC 7 cut(s) 279, 365, 499, 792, 805, 1034, 1069
MalI GATC 1 cut(s) 29
MboI GATC 1 cut(s) 27
MboII GAAGA 4 cut(s) 496, 708, 749, 925
MfeI CAATTG 1 cut(s) 1178
MhlI GDGCHC 3 cut(s) 70, 587, 1126
MluCI AATT 2 cut(s) 1178, 1257
MlyI GAGTC 4 cut(s) 116, 665, 707, 1051
MmeI TCCRAC 2 cut(s) 543, 1095
MseI TTAA 2 cut(s) 161, 183
MslI CAYNNNNRTG 2 cut(s) 78, 946
MspI CCGG 2 cut(s) 175, 522
MspR9I CCNGG 3 cut(s) 131, 175, 289
MunI CAATTG 1 cut(s) 1178
Mva1269I GAATGC 1 cut(s) 441
MvaI CCWGG 2 cut(s) 131, 289
MwoI GCNNNNNNNGC 3 cut(s) 475, 502, 916
NciI CCSGG 1 cut(s) 175
NcoI CCATGG 1 cut(s) 94
NdeI CATATG 1 cut(s) 661
NdeII GATC 1 cut(s) 27
NlaIII CATG 6 cut(s) 47, 98, 826, 989, 1060, 1265
NlaIV GGNNCC 2 cut(s) 67, 120
NmeAIII GCCGAG 2 cut(s) 275, 653
NmuCI GTSAC 6 cut(s) 279, 365, 499, 805, 1034, 1069
NspI RCATGY 2 cut(s) 47, 989
PagI TCATGA 1 cut(s) 822
PceI AGGCCT 1 cut(s) 407
PctI GAATGC 1 cut(s) 441
PfeI GAWTC 1 cut(s) 876
PkrI GCNGC 2 cut(s) 356, 507
PleI GAGTC 4 cut(s) 115, 665, 707, 1050
PpsI GAGTC 4 cut(s) 115, 665, 707, 1050
PshAI GACNNNNGTC 1 cut(s) 1041
Psp6I CCWGG 2 cut(s) 129, 287
PspGI CCWGG 2 cut(s) 129, 287
PspN4I GGNNCC 2 cut(s) 67, 120
PspPI GGNCC 1 cut(s) 519
PstNI CAGNNNCTG 1 cut(s) 325
RsaI GTAC 2 cut(s) 888, 1251
RsaNI GTAC 2 cut(s) 887, 1250
RseI CAYNNNNRTG 2 cut(s) 78, 946
SaqAI TTAA 2 cut(s) 161, 183
SatI GCNGC 2 cut(s) 355, 506
Sau3AI GATC 1 cut(s) 27
Sau96I GGNCC 1 cut(s) 519
SchI GAGTC 4 cut(s) 116, 665, 707, 1051
ScrFI CCNGG 3 cut(s) 131, 175, 289
SduI GDGCHC 3 cut(s) 70, 587, 1126
SfaNI GCATC 2 cut(s) 75, 675
SfcI CTRYAG 1 cut(s) 429
SinI GGWCC 1 cut(s) 519
SmiMI CAYNNNNRTG 2 cut(s) 78, 946
SmlI CTYRAG 3 cut(s) 530, 746, 815
SmoI CTYRAG 3 cut(s) 530, 746, 815
Sse9I AATT 2 cut(s) 1178, 1257
SseBI AGGCCT 1 cut(s) 407
SsiI CCGC 2 cut(s) 354, 494
SspMI CTAG 2 cut(s) 624, 905
StuI AGGCCT 1 cut(s) 407
StyD4I CCNGG 3 cut(s) 129, 173, 287
StyI CCWWGG 3 cut(s) 94, 392, 408
TaaI ACNGT 3 cut(s) 35, 475, 512
TaqI TCGA 1 cut(s) 233
TaqII GACCGA 1 cut(s) 1118
TasI AATT 2 cut(s) 1178, 1257
TatI WGTACW 1 cut(s) 1249
TauI GCSGC 1 cut(s) 357
TfiI GAWTC 1 cut(s) 876
Tru1I TTAA 2 cut(s) 161, 183
Tru9I TTAA 2 cut(s) 161, 183
TscAI CASTG 2 cut(s) 587, 953
TseFI GTSAC 6 cut(s) 279, 365, 499, 805, 1034, 1069
TseI GCWGC 1 cut(s) 505
Tsp45I GTSAC 6 cut(s) 279, 365, 499, 805, 1034, 1069
TspDTI ATGAA 4 cut(s) 648, 839, 930, 1250
TspGWI ACGGA 1 cut(s) 1269
TspRI CASTG 2 cut(s) 587, 953
VpaK11BI GGWCC 1 cut(s) 519
XapI RAATTY 1 cut(s) 1257
XceI RCATGY 2 cut(s) 47, 989
XmiI GTMKAC 1 cut(s) 1005
XspI CTAG 2 cut(s) 624, 905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.