Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028459.1

Orthogroup ID

OG0008025

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 257

Gene Structure 256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028459.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 256 bp

atggagaaggtgatctatggtgcgaggcatgtaatgggtaagcgaaatggagccctgcatttgaatgtgatgctatatcatggctcagaggagtctcgtggggagcctttgtccctggaatggtatagaaaggcatttcccaagttgacgaaactgacccggttgcttaaagatgtggacttggttgatgggaggcttgttaatatcaatgatggttcgattatcgtgaatggccgagctgaacacaaaatggttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

85

Amino Acids

9.69

Weight (kDa)

9.63

Isoelectric Point (pI)

22.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25500
fragaria_vesca	FvH4_2g29530
malus_domestica	MD08G1146200.v1.1 MD15G1118500.v1.1 MD15G1119600.v1.1 MD15G1122300.v1.1
prunus_persica	Prupe.1G474900_v2.0.a1
pyrus_communis	pycom07g22650 pycom15g10980 pycom15g11010 pycom15g11020 pycom854g00010
rosa_chinensis	RchiOBHm_Chr6g0298391
rosa_laevigata	RLG00000011517
rosa_multiflora	Rmu_sc0006543.1_g000003 Rmu_sc0028459.1_g000001
rosa_roxburghii	Rroxscaffold_7G00169690
rosa_rugosa	Rorug06G0280400 Rorug06G0280500
rosa_samantha	Rh6AG391500 Rh6BG399100 Rh6CG405200 Rh6DG391600
rosa_wichuraiana	Rw6G034210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	232
AfiI	CCNNNNNNNGG	1 cut(s)	120
AgsI	TTSAA	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	114
AluBI	AGCT	1 cut(s)	239
AluI	AGCT	1 cut(s)	239
Alw26I	GTCTC	1 cut(s)	99
AoxI	GGCC	1 cut(s)	232
AsuC2I	CCSGG	1 cut(s)	160
AsuHPI	GGTGA	1 cut(s)	22
BanII	GRGCYC	1 cut(s)	55
BauI	CACGAG	1 cut(s)	96
BccI	CCATC	2 cut(s)	182, 206
BciT130I	CCWGG	1 cut(s)	116
BcnI	CCSGG	1 cut(s)	160
BcoDI	GTCTC	1 cut(s)	99
Bme1390I	CCNGG	2 cut(s)	116, 160
BmiI	GGNNCC	2 cut(s)	52, 105
BmrFI	CCNGG	2 cut(s)	116, 160
BmsI	GCATC	1 cut(s)	60
BpuMI	CCSGG	1 cut(s)	160
BsaJI	CCNNGG	1 cut(s)	114
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bsc4I	CCNNNNNNNGG	1 cut(s)	120
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	1 cut(s)	114
BseLI	CCNNNNNNNGG	1 cut(s)	120
BseMII	CTCAG	1 cut(s)	99
BseRI	GAGGAG	1 cut(s)	104
BshFI	GGCC	1 cut(s)	234
BsiSI	CCGG	1 cut(s)	160
BslFI	GGGAC	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	120
BsmAI	GTCTC	1 cut(s)	99
BsmFI	GGGAC	1 cut(s)	97
BsnI	GGCC	1 cut(s)	234
Bsp1286I	GDGCHC	1 cut(s)	55
Bsp143I	GATC	1 cut(s)	12
BspANI	GGCC	1 cut(s)	234
BspCNI	CTCAG	1 cut(s)	98
BspLI	GGNNCC	2 cut(s)	52, 105
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	1 cut(s)	12
BssSI	CACGAG	1 cut(s)	96
Bst2BI	CACGAG	1 cut(s)	96
Bst2UI	CCWGG	1 cut(s)	116
BstDEI	CTNAG	1 cut(s)	85
BstKTI	GATC	1 cut(s)	15
BstMAI	GTCTC	1 cut(s)	99
BstMBI	GATC	1 cut(s)	12
BstNI	CCWGG	1 cut(s)	116
BstNSI	RCATGY	1 cut(s)	32
BstSCI	CCNGG	2 cut(s)	114, 158
BsuRI	GGCC	1 cut(s)	234
CviAII	CATG	2 cut(s)	29, 80
CviJI	RGCY	6 cut(s)	53, 84, 106, 196, 234, 239
CviKI_1	RGCY	6 cut(s)	53, 84, 106, 196, 234, 239
DdeI	CTNAG	1 cut(s)	85
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
EaeI	YGGCCR	1 cut(s)	232
Eco24I	GRGCYC	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	114
EcoT38I	GRGCYC	1 cut(s)	55
FaeI	CATG	2 cut(s)	32, 83
FaiI	YATR	5 cut(s)	18, 30, 76, 81, 126
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	2 cut(s)	28, 79
FriOI	GRGCYC	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	234
HapII	CCGG	1 cut(s)	160
Hin1II	CATG	2 cut(s)	32, 83
HincII	GTYRAC	1 cut(s)	147
HindII	GTYRAC	1 cut(s)	147
HinfI	GANTC	1 cut(s)	92
HpaII	CCGG	1 cut(s)	160
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	2 cut(s)	147, 178
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	1 cut(s)	226
Hpy8I	GTNNAC	2 cut(s)	147, 178
HpyCH4V	TGCA	1 cut(s)	58
HpyF3I	CTNAG	1 cut(s)	85
Hsp92II	CATG	2 cut(s)	32, 83
Kzo9I	GATC	1 cut(s)	12
LmnI	GCTCC	2 cut(s)	50, 103
LpnPI	CCDG	4 cut(s)	68, 101, 128, 173
LweI	GCATC	1 cut(s)	60
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MhlI	GDGCHC	1 cut(s)	55
MlyI	GAGTC	1 cut(s)	101
MnlI	CCTC	3 cut(s)	18, 82, 186
MseI	TTAA	2 cut(s)	168, 201
MslI	CAYNNNNRTG	1 cut(s)	63
MspI	CCGG	1 cut(s)	160
MspR9I	CCNGG	2 cut(s)	116, 160
MvaI	CCWGG	1 cut(s)	116
NciI	CCSGG	1 cut(s)	160
NdeII	GATC	1 cut(s)	12
NlaIII	CATG	2 cut(s)	32, 83
NlaIV	GGNNCC	2 cut(s)	52, 105
NspI	RCATGY	1 cut(s)	32
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	2 cut(s)	52, 105
RseI	CAYNNNNRTG	1 cut(s)	63
SaqAI	TTAA	2 cut(s)	168, 201
Sau3AI	GATC	1 cut(s)	12
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	2 cut(s)	116, 160
SduI	GDGCHC	1 cut(s)	55
SetI	ASST	2 cut(s)	12, 241
SfaNI	GCATC	1 cut(s)	60
SmiMI	CAYNNNNRTG	1 cut(s)	63
StyD4I	CCNGG	2 cut(s)	114, 158
TaqI	TCGA	1 cut(s)	218
Tru1I	TTAA	2 cut(s)	168, 201
Tru9I	TTAA	2 cut(s)	168, 201
XceI	RCATGY	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.