Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008025

Physical Location & Seq

Genomic Coordinates Forward (+)

42780783 .. 42791996

Gene Structure 11214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0280500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCGCGAGGATCATCATCTCGATCAAAAAAGAAGAAAGGATCATCATCATCGAAACCAAACAAGTCACCTGCGCTTGGTGCTCAGACCGTTATATACCCGCATCTTGAAGGCGGTAACCCTTTTGAACCGGGTACCAAGAACTACGAAAAATTGCTGGACATACGTCGTCGTCTTTATGAAGTTAGCAGCAAACGTCCTTGTGGTTTTACTATCAGCGCCTGTGACCCTTTTGCTCCTGGTAACTTCCGTGGAGCATCCAAATTCACTGCCCTTGTTCCTGACAAAACGTTGTTTCCAGGCCCCAGGTTGAAAGAATCAAAGATTGCCTGTCCTCCTTCCCAAGATGGCTGCAGGTCAGTAGAATCAAGGATTGTCACTTCTCCTCCCCAAGATGGCTGCCGGTCAGCAGAATCAAGGATTGTCACTCTTCCTCCCCGAGATGGCTGCCGGTCAGTAGAATCAAGGATTGCCACTCTTCCTTCCCGAGATGATTGTGAGAAGGGTACCGGTGATCTTTTATACCACATAGATAGAGTATGTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

182

Amino Acids

19.82

Weight (kDa)

9.55

Isoelectric Point (pI)

68.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25500
fragaria_vesca	FvH4_2g29530
malus_domestica	MD08G1146200.v1.1 MD15G1118500.v1.1 MD15G1119600.v1.1 MD15G1122300.v1.1
prunus_persica	Prupe.1G474900_v2.0.a1
pyrus_communis	pycom07g22650 pycom15g10980 pycom15g11010 pycom15g11020 pycom854g00010
rosa_chinensis	RchiOBHm_Chr6g0298391
rosa_laevigata	RLG00000011517
rosa_multiflora	Rmu_sc0006543.1_g000003 Rmu_sc0028459.1_g000001
rosa_roxburghii	Rroxscaffold_7G00169690
rosa_rugosa	Rorug06G0280400 Rorug06G0280500
rosa_samantha	Rh6AG391500 Rh6BG399100 Rh6CG405200 Rh6DG391600
rosa_wichuraiana	Rw6G034210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	79
Acc36I	ACCTGC	2 cut(s)	79, 345
Acc65I	GGTACC	2 cut(s)	134, 506
AccB1I	GGYRCC	2 cut(s)	134, 506
AccII	CGCG	1 cut(s)	7
AciI	CCGC	2 cut(s)	101, 114
AclI	AACGTT	1 cut(s)	290
AclWI	GGATC	2 cut(s)	19, 49
AcsI	RAATTY	1 cut(s)	263
AfaI	GTAC	2 cut(s)	136, 508
AfiI	CCNNNNNNNGG	3 cut(s)	77, 395, 443
AgeI	ACCGGT	1 cut(s)	509
AgsI	TTSAA	3 cut(s)	110, 128, 313
AjnI	CCWGG	3 cut(s)	238, 298, 305
Alw21I	GWGCWC	1 cut(s)	85
AlwI	GGATC	2 cut(s)	19, 49
AlwNI	CAGNNNCTG	1 cut(s)	222
Ama87I	CYCGRG	2 cut(s)	438, 486
AoxI	GGCC	1 cut(s)	301
ApeKI	GCWGC	4 cut(s)	189, 351, 399, 447
ApoI	RAATTY	1 cut(s)	263
AsiGI	ACCGGT	1 cut(s)	509
Asp718I	GGTACC	2 cut(s)	134, 506
AspLEI	GCGC	3 cut(s)	7, 76, 221
AspS9I	GGNCC	1 cut(s)	302
AsuC2I	CCSGG	1 cut(s)	132
AsuHPI	GGTGA	2 cut(s)	60, 524
AvaI	CYCGRG	2 cut(s)	438, 486
BanI	GGYRCC	2 cut(s)	134, 506
Bbv12I	GWGCWC	1 cut(s)	85
BbvI	GCAGC	4 cut(s)	201, 338, 386, 434
BccI	CCATC	3 cut(s)	341, 389, 437
BcgI	CGANNNNNNTGC	2 cut(s)	429, 463
BciT130I	CCWGG	3 cut(s)	240, 300, 307
BcnI	CCSGG	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	352
BfoI	RGCGCY	1 cut(s)	222
BfuAI	ACCTGC	2 cut(s)	79, 345
BisI	GCNGC	4 cut(s)	190, 352, 400, 448
BlsI	GCNGC	4 cut(s)	191, 353, 401, 449
Bme1390I	CCNGG	4 cut(s)	132, 240, 300, 307
BmeT110I	CYCGRG	2 cut(s)	438, 486
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	3 cut(s)	136, 304, 508
BmrFI	CCNGG	4 cut(s)	132, 240, 300, 307
BmsI	GCATC	2 cut(s)	112, 266
BoxI	GACNNNNGTC	1 cut(s)	165
BpuMI	CCSGG	1 cut(s)	132
BsaBI	GATNNNNATC	2 cut(s)	16, 46
BsaJI	CCNNGG	2 cut(s)	250, 305
BsaWI	WCCGGW	1 cut(s)	509
BsaXI	ACNNNNNCTCC	4 cut(s)	370, 400, 418, 448
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 395, 443
Bse118I	RCCGGY	3 cut(s)	402, 450, 509
Bse8I	GATNNNNATC	2 cut(s)	16, 46
BseBI	CCWGG	3 cut(s)	240, 300, 307
BseDI	CCNNGG	2 cut(s)	250, 305
BseGI	GGATG	1 cut(s)	257
BseJI	GATNNNNATC	2 cut(s)	16, 46
BseLI	CCNNNNNNNGG	3 cut(s)	77, 395, 443
BseMII	CTCAG	1 cut(s)	98
BseRI	GAGGAG	1 cut(s)	375
BseXI	GCAGC	4 cut(s)	201, 338, 386, 434
Bsh1236I	CGCG	1 cut(s)	7
BshFI	GGCC	1 cut(s)	303
BshNI	GGYRCC	2 cut(s)	134, 506
BshTI	ACCGGT	1 cut(s)	509
BsiHKAI	GWGCWC	1 cut(s)	85
BsiHKCI	CYCGRG	2 cut(s)	438, 486
BsiSI	CCGG	4 cut(s)	131, 403, 451, 510
BslI	CCNNNNNNNGG	3 cut(s)	77, 395, 443
BsnI	GGCC	1 cut(s)	303
BsoBI	CYCGRG	2 cut(s)	438, 486
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp143I	GATC	4 cut(s)	11, 23, 41, 514
BspACI	CCGC	2 cut(s)	101, 114
BspANI	GGCC	1 cut(s)	303
BspCNI	CTCAG	1 cut(s)	97
BspFNI	CGCG	1 cut(s)	7
BspLI	GGNNCC	3 cut(s)	136, 304, 508
BspMAI	CTGCAG	1 cut(s)	356
BspMI	ACCTGC	2 cut(s)	79, 345
BspPI	GGATC	2 cut(s)	19, 49
BspT107I	GGYRCC	2 cut(s)	134, 506
BsrFI	RCCGGY	3 cut(s)	402, 450, 509
BssAI	RCCGGY	3 cut(s)	402, 450, 509
BssECI	CCNNGG	2 cut(s)	250, 305
BssMI	GATC	4 cut(s)	11, 23, 41, 514
Bst2UI	CCWGG	3 cut(s)	240, 300, 307
Bst4CI	ACNGT	1 cut(s)	91
Bst6I	CTCTTC	2 cut(s)	435, 483
BstDEI	CTNAG	1 cut(s)	84
BstDSI	CCRYGG	1 cut(s)	250
BstEII	GGTNACC	1 cut(s)	116
BstF5I	GGATG	1 cut(s)	257
BstFNI	CGCG	1 cut(s)	7
BstH2I	RGCGCY	1 cut(s)	222
BstHHI	GCGC	3 cut(s)	7, 76, 221
BstKTI	GATC	4 cut(s)	14, 26, 44, 517
BstMBI	GATC	4 cut(s)	11, 23, 41, 514
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	3 cut(s)	240, 300, 307
BstPAI	GACNNNNGTC	1 cut(s)	165
BstPI	GGTNACC	1 cut(s)	116
BstSCI	CCNGG	4 cut(s)	130, 238, 298, 305
BstSFI	CTRYAG	1 cut(s)	352
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	4 cut(s)	201, 338, 386, 434
BsuRI	GGCC	1 cut(s)	303
BtgI	CCRYGG	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	257
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	1 cut(s)	267
BveI	ACCTGC	2 cut(s)	79, 345
CaiI	CAGNNNCTG	1 cut(s)	222
CfoI	GCGC	3 cut(s)	7, 76, 221
Cfr10I	RCCGGY	3 cut(s)	402, 450, 509
Cfr13I	GGNCC	1 cut(s)	302
Csp6I	GTAC	2 cut(s)	135, 507
CspAI	ACCGGT	1 cut(s)	509
CviJI	RGCY	4 cut(s)	303, 351, 399, 447
CviKI_1	RGCY	4 cut(s)	303, 351, 399, 447
CviQI	GTAC	2 cut(s)	135, 507
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	4 cut(s)	13, 25, 43, 516
DpnII	GATC	4 cut(s)	11, 23, 41, 514
Eam1104I	CTCTTC	2 cut(s)	435, 483
EarI	CTCTTC	2 cut(s)	435, 483
Eco88I	CYCGRG	2 cut(s)	438, 486
Eco91I	GGTNACC	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	302
EcoO65I	GGTNACC	1 cut(s)	116
EcoRII	CCWGG	3 cut(s)	238, 298, 305
FaiI	YATR	7 cut(s)	95, 97, 164, 180, 523, 530, 541
FauI	CCCGC	1 cut(s)	108
Fnu4HI	GCNGC	4 cut(s)	190, 352, 400, 448
FokI	GGATG	1 cut(s)	244
Fsp4HI	GCNGC	4 cut(s)	190, 352, 400, 448
GlaI	GCGC	3 cut(s)	6, 75, 220
GluI	GCNGC	4 cut(s)	190, 352, 400, 448
HaeII	RGCGCY	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	303
HapII	CCGG	4 cut(s)	131, 403, 451, 510
HhaI	GCGC	3 cut(s)	7, 76, 221
Hin6I	GCGC	3 cut(s)	5, 74, 219
HinP1I	GCGC	3 cut(s)	5, 74, 219
HinfI	GANTC	4 cut(s)	317, 365, 413, 461
HpaII	CCGG	4 cut(s)	131, 403, 451, 510
HphI	GGTGA	2 cut(s)	60, 524
Hpy188I	TCNGA	1 cut(s)	87
Hpy188III	TCNNGA	4 cut(s)	21, 107, 281, 486
Hpy99I	CGWCG	2 cut(s)	171, 174
HpyAV	CCTTC	4 cut(s)	104, 348, 492, 496
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4IV	ACGT	3 cut(s)	166, 196, 290
HpyCH4V	TGCA	1 cut(s)	354
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	1 cut(s)	84
HpySE526I	ACGT	3 cut(s)	166, 196, 290
HspAI	GCGC	3 cut(s)	5, 74, 219
KpnI	GGTACC	2 cut(s)	138, 510
Kzo9I	GATC	4 cut(s)	11, 23, 41, 514
LmnI	GCTCC	2 cut(s)	241, 254
Lsp1109I	GCAGC	4 cut(s)	201, 338, 386, 434
LweI	GCATC	2 cut(s)	112, 266
MaeII	ACGT	3 cut(s)	166, 196, 290
MaeIII	GTNAC	6 cut(s)	66, 116, 224, 242, 376, 424
MalI	GATC	4 cut(s)	13, 25, 43, 516
MboI	GATC	4 cut(s)	11, 23, 41, 514
MboII	GAAGA	3 cut(s)	46, 422, 470
MhlI	GDGCHC	1 cut(s)	85
MluCI	AATT	2 cut(s)	152, 263
MnlI	CCTC	3 cut(s)	345, 396, 444
MspI	CCGG	4 cut(s)	131, 403, 451, 510
MspR9I	CCNGG	4 cut(s)	132, 240, 300, 307
MvaI	CCWGG	3 cut(s)	240, 300, 307
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	1 cut(s)	80
NciI	CCSGG	1 cut(s)	132
NdeII	GATC	4 cut(s)	11, 23, 41, 514
NlaIV	GGNNCC	3 cut(s)	136, 304, 508
NmuCI	GTSAC	4 cut(s)	66, 224, 376, 424
PaqCI	CACCTGC	1 cut(s)	79
PfeI	GAWTC	4 cut(s)	317, 365, 413, 461
PinAI	ACCGGT	1 cut(s)	509
PkrI	GCNGC	4 cut(s)	191, 353, 401, 449
PshAI	GACNNNNGTC	1 cut(s)	165
Psp1406I	AACGTT	1 cut(s)	290
Psp6I	CCWGG	3 cut(s)	238, 298, 305
PspEI	GGTNACC	1 cut(s)	116
PspGI	CCWGG	3 cut(s)	238, 298, 305
PspN4I	GGNNCC	3 cut(s)	136, 304, 508
PspPI	GGNCC	1 cut(s)	302
PstI	CTGCAG	1 cut(s)	356
PstNI	CAGNNNCTG	1 cut(s)	222
RsaI	GTAC	2 cut(s)	136, 508
RsaNI	GTAC	2 cut(s)	135, 507
SatI	GCNGC	4 cut(s)	190, 352, 400, 448
Sau3AI	GATC	4 cut(s)	11, 23, 41, 514
Sau96I	GGNCC	1 cut(s)	302
ScrFI	CCNGG	4 cut(s)	132, 240, 300, 307
SduI	GDGCHC	1 cut(s)	85
SetI	ASST	6 cut(s)	73, 169, 199, 293, 311, 359
SfaNI	GCATC	2 cut(s)	112, 266
SfcI	CTRYAG	1 cut(s)	352
Sse9I	AATT	2 cut(s)	152, 263
SsiI	CCGC	2 cut(s)	101, 114
StyD4I	CCNGG	4 cut(s)	130, 238, 298, 305
TaaI	ACNGT	1 cut(s)	91
TaiI	ACGT	3 cut(s)	169, 199, 293
TaqI	TCGA	2 cut(s)	22, 53
TasI	AATT	2 cut(s)	152, 263
TfiI	GAWTC	4 cut(s)	317, 365, 413, 461
TscAI	CASTG	1 cut(s)	274
TseFI	GTSAC	4 cut(s)	66, 224, 376, 424
TseI	GCWGC	4 cut(s)	189, 351, 399, 447
Tsp45I	GTSAC	4 cut(s)	66, 224, 376, 424
TspDTI	ATGAA	1 cut(s)	195
TspGWI	ACGGA	1 cut(s)	239
TspRI	CASTG	1 cut(s)	274
XapI	RAATTY	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.