Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0008025

Physical Location & Seq

Genomic Coordinates Forward (+)

10148419 .. 10150190

Gene Structure 1772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011517

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGCATTTAGACATATGGAGAAGGTGATCTATGGTGCGAGGCATGTAATGGGTAATCGAAATGGAGCCCTGCATTTGAATGTGATGCTATATCATGGCTCAGAGGAGTCTCGTGGGGAGCCTTTGTCCCTGGAATGGTACATAAAGGCATTTCCGAAGTTAACGAAACTGACCCGGTTGCTTAAAGATGTGGATTTGACTGATGGGAGGCTTGTTAATATCAATGATGGTTCGATTATCGTGAATGGCCGAGCTGAACACAAAATGGTTGCTTTCAAGTCACTTGCCAGGGTCTTTGTTGGGTCTCCATTGGTTCAGCAGACGCTGTGGAGTAATGTGGTGGGGTGGGCTGGCGGTAGAGGATGTGACCCTTTTGTCTGTTTCAGTAAACCAAGGGAAAGAGAGGCCTTGGTTGTGAAGTCAATGTCTGTAGTGGGTAGCATTCTGAACATTACTGCACAGCAGAGGCAGACGGTGCGTGTGAAGATATGTCCGCAGGTCACGCAGCACCGTATATGGACCGGCACGCTTGAGGAGATACTAAATGGATTGAAATGTGAGTTGGAGGTTGTAGATTATCAGTGCCCGAGCAAAGGGACGAGGATTGGTCAGCAGATAGTTTCTAGCTGTCTGAAGTTCTTGGCTGACACATCCATTTCATATGACGATGACTCGGCTTCGTGGATGCGCCTTTCAACTGCAAAGATTACTGACTCTTCTGGTTTGCAAAAATGGGAAGACCTGCTTGAGATGTTCAATGACCTTATTGATTGTTTGAAAAACGACAGGGAGTTACTTCTTTATGTGACGAAGCTTGAGGTCATGAAAGAGGGGCTGTCTCAAATCAAGGATGTGTTGGTTGATAAAAGTATTGGATTCAAGGAAGTACGACATCAAGAAAGCCTAGTGCAGAAGAAGCTGTCCAAGACATTGGGTCATTCATCCCAGTGTTTGTTCACACTCTTGTTATATTACCTCTATGGGCATGTTAGAGATATTGAAGTAGACTTATCTGGTGGTCTTTATAGCATTAGTGACAAGAGTCTCTGTCTGTGCATGGGAAGGATTGTGACTTCAGATGATGAGACAATGATTTGGAGTGGGGTGAAGCAGTTGGACAGGGCTCTCGGTCTTTTCAACTTTGTATGGGAAACAGCAGGAATGGAAGGAGTTTTGCAATTGCAAGGCCATCTATGGTGTGTAGGAGCTGAGAGCAGAACACTTGCATATAGAGGAAACACATTCTTTGTACACGGAATTCATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

423

Amino Acids

47.53

Weight (kDa)

7.95

Isoelectric Point (pI)

27.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25500
fragaria_vesca	FvH4_2g29530
malus_domestica	MD08G1146200.v1.1 MD15G1118500.v1.1 MD15G1119600.v1.1 MD15G1122300.v1.1
prunus_persica	Prupe.1G474900_v2.0.a1
pyrus_communis	pycom07g22650 pycom15g10980 pycom15g11010 pycom15g11020 pycom854g00010
rosa_chinensis	RchiOBHm_Chr6g0298391
rosa_laevigata	RLG00000011517
rosa_multiflora	Rmu_sc0006543.1_g000003 Rmu_sc0028459.1_g000001
rosa_roxburghii	Rroxscaffold_7G00169690
rosa_rugosa	Rorug06G0280400 Rorug06G0280500
rosa_samantha	Rh6AG391500 Rh6BG399100 Rh6CG405200 Rh6DG391600
rosa_wichuraiana	Rw6G034210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	374
Acc36I	ACCTGC	2 cut(s)	487, 750
AccI	GTMKAC	1 cut(s)	1005
AciI	CCGC	2 cut(s)	354, 494
AcoI	YGGCCR	1 cut(s)	247
AcsI	RAATTY	1 cut(s)	1257
AcuI	CTGAAG	2 cut(s)	653, 1059
AfaI	GTAC	3 cut(s)	140, 888, 1251
AfiI	CCNNNNNNNGG	2 cut(s)	135, 593
AgsI	TTSAA	9 cut(s)	79, 277, 553, 696, 757, 778, 880, 1001, 1138
AhdI	GACNNNNNGTC	1 cut(s)	933
AjnI	CCWGG	2 cut(s)	129, 287
AjuI	GAANNNNNNNTTGG	2 cut(s)	545, 577
AluBI	AGCT	5 cut(s)	254, 627, 814, 919, 1208
AluI	AGCT	5 cut(s)	254, 627, 814, 919, 1208
Alw26I	GTCTC	5 cut(s)	114, 309, 843, 1049, 1079
AlwNI	CAGNNNCTG	1 cut(s)	325
Ama87I	CYCGRG	1 cut(s)	586
AoxI	GGCC	3 cut(s)	247, 405, 1186
ApeKI	GCWGC	1 cut(s)	505
ApoI	RAATTY	1 cut(s)	1257
AspLEI	GCGC	1 cut(s)	690
AspS9I	GGNCC	1 cut(s)	519
AsuC2I	CCSGG	1 cut(s)	175
AsuHPI	GGTGA	2 cut(s)	37, 1117
AvaI	CYCGRG	1 cut(s)	586
AvaII	GGWCC	1 cut(s)	519
BaeGI	GKGCMC	1 cut(s)	587
BanII	GRGCYC	2 cut(s)	70, 1126
BauI	CACGAG	1 cut(s)	111
BbsI	GAAGAC	1 cut(s)	744
BbvI	GCAGC	1 cut(s)	517
BccI	CCATC	3 cut(s)	197, 221, 1197
BciT130I	CCWGG	2 cut(s)	131, 289
BcnI	CCSGG	1 cut(s)	175
BcoDI	GTCTC	5 cut(s)	114, 309, 843, 1049, 1079
BfaI	CTAG	2 cut(s)	624, 905
BfmI	CTRYAG	1 cut(s)	429
BfuAI	ACCTGC	2 cut(s)	487, 750
BisI	GCNGC	1 cut(s)	506
BlsI	GCNGC	1 cut(s)	507
Bme1390I	CCNGG	3 cut(s)	131, 175, 289
Bme18I	GGWCC	1 cut(s)	519
BmeRI	GACNNNNNGTC	1 cut(s)	933
BmeT110I	CYCGRG	1 cut(s)	586
BmgT120I	GGNCC	1 cut(s)	519
BmiI	GGNNCC	2 cut(s)	67, 120
BmrFI	CCNGG	3 cut(s)	131, 175, 289
BmrI	ACTGGG	1 cut(s)	940
BmsI	GCATC	2 cut(s)	75, 675
BmuI	ACTGGG	1 cut(s)	940
BoxI	GACNNNNGTC	1 cut(s)	1041
BpiI	GAAGAC	1 cut(s)	744
BpuEI	CTTGAG	3 cut(s)	551, 767, 836
BpuMI	CCSGG	1 cut(s)	175
BsaI	GGTCTC	1 cut(s)	309
BsaJI	CCNNGG	4 cut(s)	129, 288, 392, 408
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 593
Bse118I	RCCGGY	1 cut(s)	521
Bse1I	ACTGG	1 cut(s)	946
BseBI	CCWGG	2 cut(s)	131, 289
BseDI	CCNNGG	4 cut(s)	129, 288, 392, 408
BseGI	GGATG	5 cut(s)	368, 650, 690, 856, 941
BseLI	CCNNNNNNNGG	2 cut(s)	135, 593
BseMII	CTCAG	2 cut(s)	114, 1200
BseNI	ACTGG	1 cut(s)	946
BseRI	GAGGAG	2 cut(s)	119, 548
BseSI	GKGCMC	1 cut(s)	587
BseXI	GCAGC	1 cut(s)	517
BsgI	GTGCAG	2 cut(s)	441, 929
BshFI	GGCC	3 cut(s)	249, 407, 1188
BsiHKCI	CYCGRG	1 cut(s)	586
BsiSI	CCGG	2 cut(s)	175, 522
BslFI	GGGAC	2 cut(s)	112, 610
BslI	CCNNNNNNNGG	2 cut(s)	135, 593
BsmAI	GTCTC	5 cut(s)	114, 309, 843, 1049, 1079
BsmFI	GGGAC	2 cut(s)	112, 610
BsmI	GAATGC	1 cut(s)	441
BsnI	GGCC	3 cut(s)	249, 407, 1188
Bso31I	GGTCTC	1 cut(s)	309
BsoBI	CYCGRG	1 cut(s)	586
Bsp1286I	GDGCHC	3 cut(s)	70, 587, 1126
Bsp1407I	TGTACA	1 cut(s)	1249
Bsp143I	GATC	1 cut(s)	27
BspACI	CCGC	2 cut(s)	354, 494
BspANI	GGCC	3 cut(s)	249, 407, 1188
BspCNI	CTCAG	2 cut(s)	113, 1201
BspHI	TCATGA	1 cut(s)	822
BspLI	GGNNCC	2 cut(s)	67, 120
BspMI	ACCTGC	2 cut(s)	487, 750
BspTNI	GGTCTC	1 cut(s)	309
BsrFI	RCCGGY	1 cut(s)	521
BsrGI	TGTACA	1 cut(s)	1249
BsrI	ACTGG	1 cut(s)	946
BssAI	RCCGGY	1 cut(s)	521
BssECI	CCNNGG	4 cut(s)	129, 288, 392, 408
BssMI	GATC	1 cut(s)	27
BssSI	CACGAG	1 cut(s)	111
BssT1I	CCWWGG	2 cut(s)	392, 408
Bst2BI	CACGAG	1 cut(s)	111
Bst2UI	CCWGG	2 cut(s)	131, 289
Bst4CI	ACNGT	2 cut(s)	475, 512
Bst6I	CTCTTC	1 cut(s)	721
BstAPI	GCANNNNNTGC	1 cut(s)	475
BstAUI	TGTACA	1 cut(s)	1249
BstC8I	GCNNGC	2 cut(s)	352, 527
BstDEI	CTNAG	2 cut(s)	100, 1209
BstF5I	GGATG	5 cut(s)	368, 650, 690, 856, 941
BstHHI	GCGC	1 cut(s)	690
BstKTI	GATC	1 cut(s)	30
BstMAI	GTCTC	5 cut(s)	114, 309, 843, 1049, 1079
BstMBI	GATC	1 cut(s)	27
BstMWI	GCNNNNNNNGC	3 cut(s)	475, 502, 916
BstNI	CCWGG	2 cut(s)	131, 289
BstNSI	RCATGY	2 cut(s)	47, 989
BstPAI	GACNNNNGTC	1 cut(s)	1041
BstSCI	CCNGG	3 cut(s)	129, 173, 287
BstSFI	CTRYAG	1 cut(s)	429
BstSLI	GKGCMC	1 cut(s)	587
BstV1I	GCAGC	1 cut(s)	517
BstV2I	GAAGAC	1 cut(s)	744
BstXI	CCANNNNNNTGG	1 cut(s)	931
BsuRI	GGCC	3 cut(s)	249, 407, 1188
BtsCI	GGATG	5 cut(s)	368, 650, 690, 856, 941
BtsIMutI	CAGTG	2 cut(s)	587, 953
BveI	ACCTGC	2 cut(s)	487, 750
Cac8I	GCNNGC	2 cut(s)	352, 527
CaiI	CAGNNNCTG	1 cut(s)	325
CciI	TCATGA	1 cut(s)	822
CfoI	GCGC	1 cut(s)	690
Cfr10I	RCCGGY	1 cut(s)	521
Cfr13I	GGNCC	1 cut(s)	519
CseI	GACGC	1 cut(s)	331
Csp6I	GTAC	3 cut(s)	139, 887, 1250
CviAII	CATG	6 cut(s)	44, 95, 823, 986, 1057, 1262
CviQI	GTAC	3 cut(s)	139, 887, 1250
DdeI	CTNAG	2 cut(s)	100, 1209
DpnI	GATC	1 cut(s)	29
DpnII	GATC	1 cut(s)	27
DrdI	GACNNNNNNGTC	1 cut(s)	374
DriI	GACNNNNNGTC	1 cut(s)	933
DseDI	GACNNNNNNGTC	1 cut(s)	374
EaeI	YGGCCR	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	721
Eam1105I	GACNNNNNGTC	1 cut(s)	933
EarI	CTCTTC	1 cut(s)	721
Eco130I	CCWWGG	2 cut(s)	392, 408
Eco147I	AGGCCT	1 cut(s)	407
Eco24I	GRGCYC	2 cut(s)	70, 1126
Eco31I	GGTCTC	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	519
Eco57I	CTGAAG	2 cut(s)	653, 1059
Eco88I	CYCGRG	1 cut(s)	586
EcoRI	GAATTC	1 cut(s)	1257
EcoRII	CCWGG	2 cut(s)	129, 287
EcoT14I	CCWWGG	2 cut(s)	392, 408
EcoT38I	GRGCYC	2 cut(s)	70, 1126
ErhI	CCWWGG	2 cut(s)	392, 408
FaeI	CATG	6 cut(s)	47, 98, 826, 989, 1060, 1265
FalI	AAGNNNNNCTT	2 cut(s)	729, 761
FaqI	GGGAC	2 cut(s)	112, 610
FatI	CATG	6 cut(s)	43, 94, 822, 985, 1056, 1261
FauNDI	CATATG	2 cut(s)	15, 661
FblI	GTMKAC	1 cut(s)	1005
Fnu4HI	GCNGC	1 cut(s)	506
FokI	GGATG	5 cut(s)	375, 637, 697, 863, 928
FriOI	GRGCYC	2 cut(s)	70, 1126
Fsp4HI	GCNGC	1 cut(s)	506
FspBI	CTAG	2 cut(s)	624, 905
GlaI	GCGC	1 cut(s)	689
GluI	GCNGC	1 cut(s)	506
HaeIII	GGCC	3 cut(s)	249, 407, 1188
HapII	CCGG	2 cut(s)	175, 522
HgaI	GACGC	1 cut(s)	331
HhaI	GCGC	1 cut(s)	690
Hin1II	CATG	6 cut(s)	47, 98, 826, 989, 1060, 1265
Hin6I	GCGC	1 cut(s)	688
HinP1I	GCGC	1 cut(s)	688
HincII	GTYRAC	1 cut(s)	162
HindII	GTYRAC	1 cut(s)	162
HindIII	AAGCTT	1 cut(s)	812
HinfI	GANTC	5 cut(s)	107, 671, 713, 876, 1042
HpaI	GTTAAC	1 cut(s)	162
HpaII	CCGG	2 cut(s)	175, 522
HphI	GGTGA	2 cut(s)	37, 1117
Hpy166II	GTNNAC	5 cut(s)	162, 389, 957, 1006, 1252
Hpy188I	TCNGA	5 cut(s)	103, 156, 447, 633, 1078
Hpy188III	TCNNGA	3 cut(s)	241, 823, 896
Hpy8I	GTNNAC	5 cut(s)	162, 389, 957, 1006, 1252
HpyAV	CCTTC	3 cut(s)	16, 1056, 1160
HpyCH4III	ACNGT	2 cut(s)	475, 512
HpyCH4V	TGCA	9 cut(s)	73, 458, 701, 727, 910, 1056, 1177, 1183, 1226
HpyF10VI	GCNNNNNNNGC	3 cut(s)	475, 502, 916
HpyF3I	CTNAG	2 cut(s)	100, 1209
Hsp92II	CATG	6 cut(s)	47, 98, 826, 989, 1060, 1265
HspAI	GCGC	1 cut(s)	688
KspAI	GTTAAC	1 cut(s)	162
Kzo9I	GATC	1 cut(s)	27
LmnI	GCTCC	3 cut(s)	65, 118, 1205
Lsp1109I	GCAGC	1 cut(s)	517
LweI	GCATC	2 cut(s)	75, 675
MaeI	CTAG	2 cut(s)	624, 905
MaeIII	GTNAC	7 cut(s)	279, 365, 499, 792, 805, 1034, 1069
MalI	GATC	1 cut(s)	29
MboI	GATC	1 cut(s)	27
MboII	GAAGA	4 cut(s)	496, 708, 749, 925
MfeI	CAATTG	1 cut(s)	1178
MhlI	GDGCHC	3 cut(s)	70, 587, 1126
MluCI	AATT	2 cut(s)	1178, 1257
MlyI	GAGTC	4 cut(s)	116, 665, 707, 1051
MmeI	TCCRAC	2 cut(s)	543, 1095
MseI	TTAA	3 cut(s)	161, 183, 216
MslI	CAYNNNNRTG	2 cut(s)	78, 946
MspI	CCGG	2 cut(s)	175, 522
MspR9I	CCNGG	3 cut(s)	131, 175, 289
MunI	CAATTG	1 cut(s)	1178
Mva1269I	GAATGC	1 cut(s)	441
MvaI	CCWGG	2 cut(s)	131, 289
MwoI	GCNNNNNNNGC	3 cut(s)	475, 502, 916
NciI	CCSGG	1 cut(s)	175
NdeI	CATATG	2 cut(s)	15, 661
NdeII	GATC	1 cut(s)	27
NlaIII	CATG	6 cut(s)	47, 98, 826, 989, 1060, 1265
NlaIV	GGNNCC	2 cut(s)	67, 120
NmeAIII	GCCGAG	2 cut(s)	275, 653
NmuCI	GTSAC	6 cut(s)	279, 365, 499, 805, 1034, 1069
NspI	RCATGY	2 cut(s)	47, 989
PagI	TCATGA	1 cut(s)	822
PceI	AGGCCT	1 cut(s)	407
PctI	GAATGC	1 cut(s)	441
PfeI	GAWTC	1 cut(s)	876
PkrI	GCNGC	1 cut(s)	507
PleI	GAGTC	4 cut(s)	115, 665, 707, 1050
PpsI	GAGTC	4 cut(s)	115, 665, 707, 1050
PshAI	GACNNNNGTC	1 cut(s)	1041
Psp6I	CCWGG	2 cut(s)	129, 287
PspGI	CCWGG	2 cut(s)	129, 287
PspN4I	GGNNCC	2 cut(s)	67, 120
PspPI	GGNCC	1 cut(s)	519
PstNI	CAGNNNCTG	1 cut(s)	325
RsaI	GTAC	3 cut(s)	140, 888, 1251
RsaNI	GTAC	3 cut(s)	139, 887, 1250
RseI	CAYNNNNRTG	2 cut(s)	78, 946
SaqAI	TTAA	3 cut(s)	161, 183, 216
SatI	GCNGC	1 cut(s)	506
Sau3AI	GATC	1 cut(s)	27
Sau96I	GGNCC	1 cut(s)	519
SchI	GAGTC	4 cut(s)	116, 665, 707, 1051
ScrFI	CCNGG	3 cut(s)	131, 175, 289
SduI	GDGCHC	3 cut(s)	70, 587, 1126
SfaNI	GCATC	2 cut(s)	75, 675
SfcI	CTRYAG	1 cut(s)	429
SinI	GGWCC	1 cut(s)	519
SmiMI	CAYNNNNRTG	2 cut(s)	78, 946
SmlI	CTYRAG	3 cut(s)	530, 746, 815
SmoI	CTYRAG	3 cut(s)	530, 746, 815
Sse9I	AATT	2 cut(s)	1178, 1257
SseBI	AGGCCT	1 cut(s)	407
SsiI	CCGC	2 cut(s)	354, 494
SspMI	CTAG	2 cut(s)	624, 905
StuI	AGGCCT	1 cut(s)	407
StyD4I	CCNGG	3 cut(s)	129, 173, 287
StyI	CCWWGG	2 cut(s)	392, 408
TaaI	ACNGT	2 cut(s)	475, 512
TaqI	TCGA	2 cut(s)	58, 233
TaqII	GACCGA	1 cut(s)	1118
TasI	AATT	2 cut(s)	1178, 1257
TatI	WGTACW	1 cut(s)	1249
TfiI	GAWTC	1 cut(s)	876
Tru1I	TTAA	3 cut(s)	161, 183, 216
Tru9I	TTAA	3 cut(s)	161, 183, 216
TscAI	CASTG	2 cut(s)	587, 953
TseFI	GTSAC	6 cut(s)	279, 365, 499, 805, 1034, 1069
TseI	GCWGC	1 cut(s)	505
Tsp45I	GTSAC	6 cut(s)	279, 365, 499, 805, 1034, 1069
TspDTI	ATGAA	4 cut(s)	648, 839, 930, 1250
TspGWI	ACGGA	1 cut(s)	1269
TspRI	CASTG	2 cut(s)	587, 953
VpaK11BI	GGWCC	1 cut(s)	519
XapI	RAATTY	1 cut(s)	1257
XceI	RCATGY	2 cut(s)	47, 989
XmiI	GTMKAC	1 cut(s)	1005
XspI	CTAG	2 cut(s)	624, 905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.