AT5G26780

Interconversion of serine and glycine

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
9418137 .. 9422228
4092 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G26780.1

Sequence Viewer

Length: 1554 bp
ATGGCGTTGGCTCTTCGTAGACTCTCCTCTTCCGTTAAGAAACCGATCTCGCTTCTCTCCTCTAATGGCGGTTCACTCCGTTTCATGTCGTCTTTATCAACCGCAGCTATGGCGGAATCGGAGAAATCTCGTTCTAGTTGGATTAAGCAATTGAATGCATCTCTAGATGAAATCGATCCTGAAGTTGCGGATATTATCGAATTAGAGAAGGCTAGACAATGGAAGGGATTTGAACTTATACCGTCAGAGAATTTCACTTCTCTATCTGTGATGCAAGCCGTTGGTTCTGTTATGACTAATAAGTATAGTGAAGGATACCCTGGAGCTAGATACTATGGAGGAAATGAGTACATTGACATGGCTGAGACATTATGTCAAAAACGCGCATTAGAAGCTTTTCAGTTAGATCCTTCTAAATGGGGAGTCAATGTGCAGTCTTTATCAGGATCACCAGCTAATTTCCAAGTTTACACTGCATTGTTGAAGCCTCATGAAAGAATCATGGCACTTGATTTACCTCATGGTGGACATCTTTCTCATGGTTATCAGACTGACACGAAGAAAATATCGGCTGTATCCATCTTTTTTGAGACAATGCCATACAGATTGGATGAGAACACTGGTTACATTGATTATGACCAGCTAGAAAAGAGTGCCGTGCTTTTCAGACCGAAACTTATTGTTGCGGGTGCAAGTGCTTATGCTCGTCTATATGACTATGCACGTATTCGTAAGGTCTGTAACAAGCAAAAGGCAGTTATGTTGGCTGATATGGCTCATATTAGTGGGTTGGTTGCTGCTGGCGTTATTCCTTCTCCTTTTGAGTATGCAGATGTTGTTACGACTACAACTCACAAATCGCTTCGCGGTCCTAGAGGGGCTATGATATTCTTTAGGAAGGGGTTAAAAGAGATTAACAAACAAGGGAAAGAGGTCATGTATGACTATGAGGACAGAATTAATCAAGCTGTTTTTCCTGGACTGCAAGGTGGTCCACATAATCACACTATAACGGGTCTAGCAGTTGCTCTGAAGCAGGCAAGAACTCCTGAGTACAAGGCCTACCAGGATCAAGTTCTCCGTAATTGCTCAAAGTTTGCTGAGACTTTGCTTGCGAAAGGATATGATTTAGTGTCTGGAGGCACTGATAATCATTTAGTTTTGGTGAATCTGAAAAACAAGGGAATAGATGGATCAAGAGTGGAAAAAGTATTAGAATTAGTACATATTGCAGCAAACAAGAATACTGTTCCTGGTGATGTTTCTGCCATGGTTCCCGGTGGCATCCGTATGGGAACACCAGCCCTCACATCAAGAGGATTCATTGAGGAAGATTTTGCAAAAGTGGCGGAGTATTTTGATTTAGCCGTCAAGATAGCCTTAAAGATCAAAGCAGAGTCTCAAGGAACAAAGTTGAAAGACTTTGTAGCAACAATGCAATCAAATGAGAAATTACAGTCAGAGATGTCAAAGCTCCGTGAGATGGTAGAAGAATATGCTAAGCAATTCCCAACGATTGGGTTCGAGAAAGAGACGATGAGATACAAAGAGTAG

Protein Analysis

517

Amino Acids

57.34

Weight (kDa)

8.81

Isoelectric Point (pI)

39.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SHMT PF00464 55 - 452 2e-211 Serine hydroxymethyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1517
AccI GTMKAC 1 cut(s) 19
AccII CGCG 2 cut(s) 384, 867
AciI CCGC 7 cut(s) 69, 102, 113, 188, 686, 867, 1349
AclWI GGATC 5 cut(s) 170, 401, 454, 1077, 1201
AcsI RAATTY 1 cut(s) 250
AcuI CTGAAG 2 cut(s) 201, 1052
AfaI GTAC 3 cut(s) 350, 1055, 1224
AfiI CCNNNNNNNGG 3 cut(s) 524, 1483, 1517
AgsI TTSAA 4 cut(s) 154, 233, 484, 1417
AhdI GACNNNNNGTC 1 cut(s) 372
AjnI CCWGG 4 cut(s) 319, 976, 1065, 1252
AluBI AGCT 7 cut(s) 107, 326, 395, 455, 643, 968, 1474
AluI AGCT 7 cut(s) 107, 326, 395, 455, 643, 968, 1474
Alw26I GTCTC 5 cut(s) 359, 584, 1097, 1404, 1526
AlwI GGATC 5 cut(s) 170, 401, 454, 1077, 1201
AoxI GGCC 1 cut(s) 1059
ApeKI GCWGC 3 cut(s) 104, 797, 1232
ApoI RAATTY 1 cut(s) 250
AseI ATTAAT 1 cut(s) 960
Asp700I GAANNNNTTC 1 cut(s) 396
AspLEI GCGC 1 cut(s) 386
AspS9I GGNCC 2 cut(s) 869, 992
AsuC2I CCSGG 1 cut(s) 1278
AsuHPI GGTGA 3 cut(s) 441, 1177, 1268
AvaII GGWCC 2 cut(s) 869, 992
BbvI GCAGC 3 cut(s) 116, 784, 1244
BccI CCATC 3 cut(s) 587, 1184, 1477
BceAI ACGGC 3 cut(s) 263, 641, 1352
BciT130I CCWGG 4 cut(s) 321, 978, 1067, 1254
BciVI GTATCC 2 cut(s) 308, 586
BcnI CCSGG 1 cut(s) 1278
BcoDI GTCTC 5 cut(s) 359, 584, 1097, 1404, 1526
BfaI CTAG 7 cut(s) 135, 164, 213, 327, 644, 873, 1019
BfuI GTATCC 2 cut(s) 308, 586
BisI GCNGC 3 cut(s) 105, 798, 1233
BlpI GCTNAGC 1 cut(s) 1500
BlsI GCNGC 3 cut(s) 106, 799, 1234
Bme1390I CCNGG 5 cut(s) 321, 978, 1067, 1254, 1278
Bme18I GGWCC 2 cut(s) 869, 992
BmeRI GACNNNNNGTC 1 cut(s) 372
BmgT120I GGNCC 2 cut(s) 869, 992
BmiI GGNNCC 1 cut(s) 1275
BmrFI CCNGG 5 cut(s) 321, 978, 1067, 1254, 1278
BmsI GCATC 3 cut(s) 167, 261, 1293
BpmI CTGGAG 2 cut(s) 342, 1158
Bpu1102I GCTNAGC 1 cut(s) 1500
BpuEI CTTGAG 1 cut(s) 1386
BpuMI CCSGG 1 cut(s) 1278
Bsa29I ATCGAT 1 cut(s) 174
BsaAI YACGTR 1 cut(s) 725
BsaJI CCNNGG 2 cut(s) 319, 1269
BsaXI ACNNNNNCTCC 2 cut(s) 414, 444
Bsc4I CCNNNNNNNGG 3 cut(s) 524, 1483, 1517
Bse1I ACTGG 1 cut(s) 625
BseBI CCWGG 4 cut(s) 321, 978, 1067, 1254
BseCI ATCGAT 1 cut(s) 174
BseDI CCNNGG 2 cut(s) 319, 1269
BseGI GGATG 2 cut(s) 616, 1284
BseLI CCNNNNNNNGG 3 cut(s) 524, 1483, 1517
BseMII CTCAG 3 cut(s) 354, 1041, 1092
BseNI ACTGG 1 cut(s) 625
BseRI GAGGAG 2 cut(s) 16, 49
BseXI GCAGC 3 cut(s) 116, 784, 1244
BsgI GTGCAG 1 cut(s) 452
Bsh1236I CGCG 2 cut(s) 384, 867
BshFI GGCC 1 cut(s) 1061
BshVI ATCGAT 1 cut(s) 174
BsiSI CCGG 1 cut(s) 1278
BslI CCNNNNNNNGG 3 cut(s) 524, 1483, 1517
BsmAI GTCTC 5 cut(s) 359, 584, 1097, 1404, 1526
BsmBI CGTCTC 1 cut(s) 1526
BsmI GAATGC 1 cut(s) 160
BsnI GGCC 1 cut(s) 1061
Bsp143I GATC 7 cut(s) 45, 175, 406, 446, 1069, 1193, 1386
Bsp1720I GCTNAGC 1 cut(s) 1500
Bsp19I CCATGG 1 cut(s) 1269
BspACI CCGC 7 cut(s) 69, 102, 113, 188, 686, 867, 1349
BspANI GGCC 1 cut(s) 1061
BspCNI CTCAG 3 cut(s) 355, 1042, 1093
BspDI ATCGAT 1 cut(s) 174
BspFNI CGCG 2 cut(s) 384, 867
BspHI TCATGA 1 cut(s) 490
BspLI GGNNCC 1 cut(s) 1275
BspPI GGATC 5 cut(s) 170, 401, 454, 1077, 1201
BspQI GCTCTTC 1 cut(s) 18
BsrI ACTGG 1 cut(s) 625
BssECI CCNNGG 2 cut(s) 319, 1269
BssMI GATC 7 cut(s) 45, 175, 406, 446, 1069, 1193, 1386
BssT1I CCWWGG 1 cut(s) 1269
Bst2UI CCWGG 4 cut(s) 321, 978, 1067, 1254
Bst4CI ACNGT 3 cut(s) 243, 1249, 1458
Bst6I CTCTTC 2 cut(s) 18, 34
BstBAI YACGTR 1 cut(s) 725
BstC8I GCNNGC 4 cut(s) 276, 802, 1038, 1113
BstDEI CTNAG 4 cut(s) 363, 1050, 1101, 1500
BstDSI CCRYGG 1 cut(s) 1269
BstF5I GGATG 2 cut(s) 616, 1284
BstFNI CGCG 2 cut(s) 384, 867
BstHHI GCGC 1 cut(s) 386
BstKTI GATC 7 cut(s) 48, 178, 409, 449, 1072, 1196, 1389
BstMAI GTCTC 5 cut(s) 359, 584, 1097, 1404, 1526
BstMBI GATC 7 cut(s) 45, 175, 406, 446, 1069, 1193, 1386
BstMWI GCNNNNNNNGC 4 cut(s) 110, 392, 773, 1346
BstNI CCWGG 4 cut(s) 321, 978, 1067, 1254
BstSCI CCNGG 5 cut(s) 319, 976, 1065, 1252, 1276
BstUI CGCG 2 cut(s) 384, 867
BstV1I GCAGC 3 cut(s) 116, 784, 1244
BstX2I RGATCY 1 cut(s) 406
BstYI RGATCY 1 cut(s) 406
Bsu15I ATCGAT 1 cut(s) 174
BsuI GTATCC 2 cut(s) 308, 586
BsuRI GGCC 1 cut(s) 1061
BsuTUI ATCGAT 1 cut(s) 174
BtgI CCRYGG 1 cut(s) 1269
BtsCI GGATG 2 cut(s) 616, 1284
BtsI GCAGTG 1 cut(s) 471
BtsIMutI CAGTG 3 cut(s) 471, 618, 1143
Cac8I GCNNGC 4 cut(s) 276, 802, 1038, 1113
CciI TCATGA 1 cut(s) 490
CfoI GCGC 1 cut(s) 386
Cfr13I GGNCC 2 cut(s) 869, 992
ClaI ATCGAT 1 cut(s) 174
Csp6I GTAC 3 cut(s) 349, 1054, 1223
CviAII CATG 8 cut(s) 85, 358, 491, 502, 521, 539, 937, 1270
CviQI GTAC 3 cut(s) 349, 1054, 1223
DdeI CTNAG 4 cut(s) 363, 1050, 1101, 1500
DpnI GATC 7 cut(s) 47, 177, 408, 448, 1071, 1195, 1388
DpnII GATC 7 cut(s) 45, 175, 406, 446, 1069, 1193, 1386
DriI GACNNNNNGTC 1 cut(s) 372
Eam1104I CTCTTC 2 cut(s) 18, 34
Eam1105I GACNNNNNGTC 1 cut(s) 372
EarI CTCTTC 2 cut(s) 18, 34
EciI GGCGGA 2 cut(s) 128, 1364
Eco130I CCWWGG 1 cut(s) 1269
Eco147I AGGCCT 1 cut(s) 1061
Eco47I GGWCC 2 cut(s) 869, 992
Eco57I CTGAAG 2 cut(s) 201, 1052
EcoRII CCWGG 4 cut(s) 319, 976, 1065, 1252
EcoT14I CCWWGG 1 cut(s) 1269
EcoT22I ATGCAT 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 1269
Esp3I CGTCTC 1 cut(s) 1526
FaeI CATG 8 cut(s) 88, 361, 494, 505, 524, 542, 940, 1273
FalI AAGNNNNNCTT 2 cut(s) 1364, 1396
FatI CATG 8 cut(s) 84, 357, 490, 501, 520, 538, 936, 1269
FauI CCCGC 1 cut(s) 679
FblI GTMKAC 1 cut(s) 19
Fnu4HI GCNGC 3 cut(s) 105, 798, 1233
FokI GGATG 2 cut(s) 623, 1271
Fsp4HI GCNGC 3 cut(s) 105, 798, 1233
FspBI CTAG 7 cut(s) 135, 164, 213, 327, 644, 873, 1019
GlaI GCGC 1 cut(s) 385
GluI GCNGC 3 cut(s) 105, 798, 1233
GsuI CTGGAG 2 cut(s) 342, 1158
HaeIII GGCC 1 cut(s) 1061
HapII CCGG 1 cut(s) 1278
HhaI GCGC 1 cut(s) 386
Hin1II CATG 8 cut(s) 88, 361, 494, 505, 524, 542, 940, 1273
Hin6I GCGC 1 cut(s) 384
HinP1I GCGC 1 cut(s) 384
HindIII AAGCTT 1 cut(s) 393
HinfI GANTC 7 cut(s) 21, 116, 423, 498, 1168, 1320, 1397
HpaII CCGG 1 cut(s) 1278
HphI GGTGA 3 cut(s) 441, 1177, 1268
Hpy166II GTNNAC 5 cut(s) 20, 74, 469, 527, 995
Hpy188I TCNGA 7 cut(s) 121, 247, 549, 668, 1032, 1173, 1462
Hpy8I GTNNAC 5 cut(s) 20, 74, 469, 527, 995
HpyAV CCTTC 6 cut(s) 202, 217, 305, 420, 822, 892
HpyCH4III ACNGT 3 cut(s) 243, 1249, 1458
HpyCH4IV ACGT 1 cut(s) 724
HpyF10VI GCNNNNNNNGC 4 cut(s) 110, 392, 773, 1346
HpyF3I CTNAG 4 cut(s) 363, 1050, 1101, 1500
HpySE526I ACGT 1 cut(s) 724
Hsp92II CATG 8 cut(s) 88, 361, 494, 505, 524, 542, 940, 1273
HspAI GCGC 1 cut(s) 384
Kzo9I GATC 7 cut(s) 45, 175, 406, 446, 1069, 1193, 1386
LguI GCTCTTC 1 cut(s) 18
LmnI GCTCC 2 cut(s) 323, 1479
Lsp1109I GCAGC 3 cut(s) 116, 784, 1244
LweI GCATC 3 cut(s) 167, 261, 1293
MaeI CTAG 7 cut(s) 135, 164, 213, 327, 644, 873, 1019
MaeII ACGT 1 cut(s) 724
MaeIII GTNAC 3 cut(s) 623, 740, 838
MalI GATC 7 cut(s) 47, 177, 408, 448, 1071, 1195, 1388
MboI GATC 7 cut(s) 45, 175, 406, 446, 1069, 1193, 1386
MboII GAAGA 5 cut(s) 5, 21, 571, 1343, 1502
MfeI CAATTG 1 cut(s) 149
MflI RGATCY 1 cut(s) 406
MluCI AATT 9 cut(s) 149, 200, 250, 457, 957, 1084, 1217, 1451, 1505
MlyI GAGTC 3 cut(s) 15, 432, 1406
MmeI TCCRAC 1 cut(s) 119
Mph1103I ATGCAT 1 cut(s) 160
MroXI GAANNNNTTC 1 cut(s) 396
MseI TTAA 6 cut(s) 36, 144, 905, 915, 960, 1382
MslI CAYNNNNRTG 3 cut(s) 356, 783, 1289
MspI CCGG 1 cut(s) 1278
MspR9I CCNGG 5 cut(s) 321, 978, 1067, 1254, 1278
MunI CAATTG 1 cut(s) 149
Mva1269I GAATGC 1 cut(s) 160
MvaI CCWGG 4 cut(s) 321, 978, 1067, 1254
MvnI CGCG 2 cut(s) 384, 867
MwoI GCNNNNNNNGC 4 cut(s) 110, 392, 773, 1346
NciI CCSGG 1 cut(s) 1278
NcoI CCATGG 1 cut(s) 1269
NdeII GATC 7 cut(s) 45, 175, 406, 446, 1069, 1193, 1386
NlaIII CATG 8 cut(s) 88, 361, 494, 505, 524, 542, 940, 1273
NlaIV GGNNCC 1 cut(s) 1275
NsiI ATGCAT 1 cut(s) 160
PagI TCATGA 1 cut(s) 490
PceI AGGCCT 1 cut(s) 1061
PciSI GCTCTTC 1 cut(s) 18
PctI GAATGC 1 cut(s) 160
PdmI GAANNNNTTC 1 cut(s) 396
PfeI GAWTC 4 cut(s) 116, 498, 1168, 1320
PflMI CCANNNNNTGG 1 cut(s) 1517
PfoI TCCNGGA 1 cut(s) 976
PkrI GCNGC 3 cut(s) 106, 799, 1234
PleI GAGTC 3 cut(s) 15, 431, 1405
PpsI GAGTC 3 cut(s) 15, 431, 1405
Ppu21I YACGTR 1 cut(s) 725
PshBI ATTAAT 1 cut(s) 960
Psp6I CCWGG 4 cut(s) 319, 976, 1065, 1252
PspGI CCWGG 4 cut(s) 319, 976, 1065, 1252
PspN4I GGNNCC 1 cut(s) 1275
PspPI GGNCC 2 cut(s) 869, 992
PsrI GAACNNNNNNTAC 2 cut(s) 608, 640
PsuI RGATCY 1 cut(s) 406
RsaI GTAC 3 cut(s) 350, 1055, 1224
RsaNI GTAC 3 cut(s) 349, 1054, 1223
RseI CAYNNNNRTG 3 cut(s) 356, 783, 1289
SapI GCTCTTC 1 cut(s) 18
SaqAI TTAA 6 cut(s) 36, 144, 905, 915, 960, 1382
SatI GCNGC 3 cut(s) 105, 798, 1233
Sau3AI GATC 7 cut(s) 45, 175, 406, 446, 1069, 1193, 1386
Sau96I GGNCC 2 cut(s) 869, 992
SchI GAGTC 3 cut(s) 15, 432, 1406
ScrFI CCNGG 5 cut(s) 321, 978, 1067, 1254, 1278
SfaNI GCATC 3 cut(s) 167, 261, 1293
SinI GGWCC 2 cut(s) 869, 992
SmiMI CAYNNNNRTG 3 cut(s) 356, 783, 1289
SmlI CTYRAG 1 cut(s) 1401
SmoI CTYRAG 1 cut(s) 1401
Sse9I AATT 9 cut(s) 149, 200, 250, 457, 957, 1084, 1217, 1451, 1505
SseBI AGGCCT 1 cut(s) 1061
SsiI CCGC 7 cut(s) 69, 102, 113, 188, 686, 867, 1349
SspMI CTAG 7 cut(s) 135, 164, 213, 327, 644, 873, 1019
StuI AGGCCT 1 cut(s) 1061
StyD4I CCNGG 5 cut(s) 319, 976, 1065, 1252, 1276
StyI CCWWGG 1 cut(s) 1269
TaaI ACNGT 3 cut(s) 243, 1249, 1458
TaiI ACGT 1 cut(s) 727
TaqI TCGA 3 cut(s) 174, 198, 1524
TaqII GACCGA 1 cut(s) 685
TasI AATT 9 cut(s) 149, 200, 250, 457, 957, 1084, 1217, 1451, 1505
TatI WGTACW 3 cut(s) 348, 1053, 1222
TfiI GAWTC 4 cut(s) 116, 498, 1168, 1320
Tru1I TTAA 6 cut(s) 36, 144, 905, 915, 960, 1382
Tru9I TTAA 6 cut(s) 36, 144, 905, 915, 960, 1382
TscAI CASTG 3 cut(s) 478, 625, 1150
TseI GCWGC 3 cut(s) 104, 797, 1232
TspDTI ATGAA 4 cut(s) 73, 183, 507, 1312
TspGWI ACGGA 5 cut(s) 22, 68, 1070, 1277, 1466
TspRI CASTG 3 cut(s) 478, 625, 1150
Van91I CCANNNNNTGG 1 cut(s) 1517
VpaK11BI GGWCC 2 cut(s) 869, 992
VspI ATTAAT 1 cut(s) 960
XapI RAATTY 1 cut(s) 250
XbaI TCTAGA 1 cut(s) 163
XmiI GTMKAC 1 cut(s) 19
XmnI GAANNNNTTC 1 cut(s) 396
XspI CTAG 7 cut(s) 135, 164, 213, 327, 644, 873, 1019
Zsp2I ATGCAT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.