Rh7AG154700

Serine hydroxymethyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001957
Physical Location & Seq
Forward (+)
12591150 .. 12596310
5161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG154700.1

Sequence Viewer

Length: 516 bp
ATGGACGACTCCTCAGCTATATGCCCTTGGAGTTTTCTGGAACCTCTATCTGTTATGCGCGCTACCAAGGCTGCGCCTGAACCAAAGGTTTGCAAGACCAAGACTTTTGCCTCTGTTCTTACTGGCGAGGAAGAGCCTCGTATTCCCATCAGTCAATTGCCGGCTCCACGGCTCCAACAATCCGGGTTGGAGAAAAGTGCCACACTATTCAGACCCAAATTAATAGTTGCTGGTGCTAGTGCTTGTGCACGCTTGTACGACCATGCACGCATACGCAAGGTCTGTGATAAGCAGAAAGCTATTTTGTTAGCTGATATGGCACACATCAGTGAATTGGTTACGGCAGAGGAAGCTGCCCTTGATTTAATGGAGGAGCAGGCACAACGAGTCATAGAAGAGGACAGCCAGGCCCCGGCCAATATGCAAGCAAATCATGATAATGAAGATTCAGACAATGGCTCTCATGTTAGCAGCACTCCATCTCGAACTTGGGGTGCCATCTTTGAGGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001505 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004372 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005840 GO:0005886 GO:0006082 GO:0006520 GO:0006544 GO:0006563 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007623 GO:0008150 GO:0008152 GO:0008187 GO:0008219 GO:0008266 GO:0009069 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009626 GO:0009628 GO:0009853 GO:0009987 GO:0010035 GO:0010038 GO:0010319 GO:0012501 GO:0016020 GO:0016740 GO:0016741 GO:0016742 GO:0017144 GO:0019752 GO:0022626 GO:0031967 GO:0031974 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033554 GO:0034050 GO:0042133 GO:0042221 GO:0043094 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045087 GO:0046686 GO:0048046 GO:0048511 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901605 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko00260 ko00460 ko00630 ko00670 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko01523 map00260 map00460 map00630 map00670 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map01523
Pfam Domains
Protein Families
SHMT

Protein Analysis

171

Amino Acids

18.73

Weight (kDa)

4.97

Isoelectric Point (pI)

60.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SHMT PF00464 61 - 118 3.1e-19 Serine hydroxymethyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 494
AccII CGCG 1 cut(s) 60
AcoI YGGCCR 1 cut(s) 414
AfaI GTAC 1 cut(s) 257
AfiI CCNNNNNNNGG 1 cut(s) 412
AjnI CCWGG 1 cut(s) 405
AleI CACNNNNGTG 1 cut(s) 327
AluBI AGCT 4 cut(s) 17, 299, 311, 353
AluI AGCT 4 cut(s) 17, 299, 311, 353
Alw21I GWGCWC 1 cut(s) 250
Alw44I GTGCAC 1 cut(s) 246
AoxI GGCC 2 cut(s) 408, 414
ApaLI GTGCAC 1 cut(s) 246
ApeKI GCWGC 3 cut(s) 71, 353, 471
AseI ATTAAT 1 cut(s) 221
AspLEI GCGC 3 cut(s) 60, 62, 76
AspS9I GGNCC 1 cut(s) 409
AsuC2I CCSGG 2 cut(s) 184, 413
BaeGI GKGCMC 1 cut(s) 250
BanI GGYRCC 1 cut(s) 494
Bbv12I GWGCWC 1 cut(s) 250
BbvCI CCTCAGC 1 cut(s) 13
BbvI GCAGC 3 cut(s) 58, 340, 483
BccI CCATC 3 cut(s) 155, 487, 506
BceAI ACGGC 2 cut(s) 185, 357
BciT130I CCWGG 1 cut(s) 407
BcnI CCSGG 2 cut(s) 184, 413
BfaI CTAG 1 cut(s) 237
BisI GCNGC 3 cut(s) 72, 354, 472
BlsI GCNGC 3 cut(s) 73, 355, 473
Bme1390I CCNGG 3 cut(s) 184, 407, 413
BmgT120I GGNCC 1 cut(s) 409
BmiI GGNNCC 5 cut(s) 42, 165, 173, 411, 496
BmrFI CCNGG 3 cut(s) 184, 407, 413
Bpu10I CCTNAGC 1 cut(s) 13
BpuMI CCSGG 2 cut(s) 184, 413
BsaJI CCNNGG 4 cut(s) 26, 66, 167, 411
Bsc4I CCNNNNNNNGG 1 cut(s) 412
Bse118I RCCGGY 1 cut(s) 160
Bse1I ACTGG 1 cut(s) 127
BseBI CCWGG 1 cut(s) 407
BseDI CCNNGG 4 cut(s) 26, 66, 167, 411
BseLI CCNNNNNNNGG 1 cut(s) 412
BseMII CTCAG 1 cut(s) 27
BseNI ACTGG 1 cut(s) 127
BsePI GCGCGC 1 cut(s) 58
BseRI GAGGAG 1 cut(s) 386
BseSI GKGCMC 1 cut(s) 250
BseXI GCAGC 3 cut(s) 58, 340, 483
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 2 cut(s) 410, 416
BshNI GGYRCC 1 cut(s) 494
BsiHKAI GWGCWC 1 cut(s) 250
BsiSI CCGG 3 cut(s) 161, 183, 413
BslI CCNNNNNNNGG 1 cut(s) 412
BsnI GGCC 2 cut(s) 410, 416
Bsp1286I GDGCHC 1 cut(s) 250
BspANI GGCC 2 cut(s) 410, 416
BspCNI CTCAG 1 cut(s) 26
BspFNI CGCG 1 cut(s) 60
BspHI TCATGA 1 cut(s) 433
BspLI GGNNCC 5 cut(s) 42, 165, 173, 411, 496
BspQI GCTCTTC 1 cut(s) 126
BspT107I GGYRCC 1 cut(s) 494
BsrFI RCCGGY 1 cut(s) 160
BsrI ACTGG 1 cut(s) 127
BssAI RCCGGY 1 cut(s) 160
BssECI CCNNGG 4 cut(s) 26, 66, 167, 411
BssHII GCGCGC 1 cut(s) 58
BssT1I CCWWGG 2 cut(s) 26, 66
Bst2UI CCWGG 1 cut(s) 407
Bst6I CTCTTC 2 cut(s) 126, 390
BstC8I GCNNGC 6 cut(s) 60, 162, 250, 268, 378, 426
BstDEI CTNAG 1 cut(s) 13
BstDSI CCRYGG 1 cut(s) 167
BstFNI CGCG 1 cut(s) 60
BstHHI GCGC 3 cut(s) 60, 62, 76
BstMWI GCNNNNNNNGC 3 cut(s) 68, 317, 350
BstNI CCWGG 1 cut(s) 407
BstSCI CCNGG 3 cut(s) 182, 405, 411
BstSLI GKGCMC 1 cut(s) 250
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 3 cut(s) 58, 340, 483
BsuRI GGCC 2 cut(s) 410, 416
BtgI CCRYGG 1 cut(s) 167
BtsIMutI CAGTG 1 cut(s) 334
Cac8I GCNNGC 6 cut(s) 60, 162, 250, 268, 378, 426
CciI TCATGA 1 cut(s) 433
CfoI GCGC 3 cut(s) 60, 62, 76
Cfr10I RCCGGY 1 cut(s) 160
Cfr13I GGNCC 1 cut(s) 409
Csp6I GTAC 1 cut(s) 256
CviAII CATG 3 cut(s) 263, 434, 464
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 1 cut(s) 13
EaeI YGGCCR 1 cut(s) 414
Eam1104I CTCTTC 2 cut(s) 126, 390
EarI CTCTTC 2 cut(s) 126, 390
Eco130I CCWWGG 2 cut(s) 26, 66
EcoO109I RGGNCCY 1 cut(s) 409
EcoRII CCWGG 1 cut(s) 405
EcoT14I CCWWGG 2 cut(s) 26, 66
ErhI CCWWGG 2 cut(s) 26, 66
FaeI CATG 3 cut(s) 266, 437, 467
FalI AAGNNNNNCTT 2 cut(s) 342, 374
FatI CATG 3 cut(s) 262, 433, 463
Fnu4HI GCNGC 3 cut(s) 72, 354, 472
Fsp4HI GCNGC 3 cut(s) 72, 354, 472
FspBI CTAG 1 cut(s) 237
GlaI GCGC 3 cut(s) 59, 61, 75
GluI GCNGC 3 cut(s) 72, 354, 472
HaeIII GGCC 2 cut(s) 410, 416
HapII CCGG 3 cut(s) 161, 183, 413
HhaI GCGC 3 cut(s) 60, 62, 76
Hin1II CATG 3 cut(s) 266, 437, 467
Hin6I GCGC 3 cut(s) 58, 60, 74
HinP1I GCGC 3 cut(s) 58, 60, 74
HinfI GANTC 3 cut(s) 8, 387, 446
HpaII CCGG 3 cut(s) 161, 183, 413
Hpy166II GTNNAC 1 cut(s) 248
Hpy188I TCNGA 2 cut(s) 212, 451
Hpy188III TCNNGA 3 cut(s) 38, 434, 483
Hpy8I GTNNAC 1 cut(s) 248
HpyCH4V TGCA 4 cut(s) 93, 248, 266, 424
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 317, 350
HpyF3I CTNAG 1 cut(s) 13
Hsp92II CATG 3 cut(s) 266, 437, 467
HspAI GCGC 3 cut(s) 58, 60, 74
KroI GCCGGC 1 cut(s) 160
KroNI GCCGGC 1 cut(s) 162
LguI GCTCTTC 1 cut(s) 126
LmnI GCTCC 3 cut(s) 169, 177, 373
Lsp1109I GCAGC 3 cut(s) 58, 340, 483
MaeI CTAG 1 cut(s) 237
MaeIII GTNAC 1 cut(s) 337
MboII GAAGA 3 cut(s) 143, 407, 455
MfeI CAATTG 1 cut(s) 155
MhlI GDGCHC 1 cut(s) 250
MluCI AATT 3 cut(s) 155, 218, 332
MlyI GAGTC 2 cut(s) 2, 396
MmeI TCCRAC 2 cut(s) 168, 199
MnlI CCTC 9 cut(s) 22, 54, 121, 121, 147, 340, 364, 391, 499
MroNI GCCGGC 1 cut(s) 160
MseI TTAA 2 cut(s) 221, 365
MslI CAYNNNNRTG 2 cut(s) 327, 438
MspI CCGG 3 cut(s) 161, 183, 413
MspR9I CCNGG 3 cut(s) 184, 407, 413
MunI CAATTG 1 cut(s) 155
MvaI CCWGG 1 cut(s) 407
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 3 cut(s) 68, 317, 350
NaeI GCCGGC 1 cut(s) 162
NciI CCSGG 2 cut(s) 184, 413
NgoMIV GCCGGC 1 cut(s) 160
NlaIII CATG 3 cut(s) 266, 437, 467
NlaIV GGNNCC 5 cut(s) 42, 165, 173, 411, 496
OliI CACNNNNGTG 1 cut(s) 327
PagI TCATGA 1 cut(s) 433
PauI GCGCGC 1 cut(s) 58
PciSI GCTCTTC 1 cut(s) 126
PdiI GCCGGC 1 cut(s) 162
PfeI GAWTC 1 cut(s) 446
PkrI GCNGC 3 cut(s) 73, 355, 473
PleI GAGTC 2 cut(s) 2, 395
PpsI GAGTC 2 cut(s) 2, 395
PshBI ATTAAT 1 cut(s) 221
Psp6I CCWGG 1 cut(s) 405
PspGI CCWGG 1 cut(s) 405
PspN4I GGNNCC 5 cut(s) 42, 165, 173, 411, 496
PspPI GGNCC 1 cut(s) 409
PteI GCGCGC 1 cut(s) 58
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
RseI CAYNNNNRTG 2 cut(s) 327, 438
SapI GCTCTTC 1 cut(s) 126
SaqAI TTAA 2 cut(s) 221, 365
SatI GCNGC 3 cut(s) 72, 354, 472
Sau96I GGNCC 1 cut(s) 409
SchI GAGTC 2 cut(s) 2, 396
ScrFI CCNGG 3 cut(s) 184, 407, 413
SduI GDGCHC 1 cut(s) 250
SetI ASST 7 cut(s) 19, 46, 90, 282, 301, 313, 355
SmiMI CAYNNNNRTG 2 cut(s) 327, 438
Sse9I AATT 3 cut(s) 155, 218, 332
SspMI CTAG 1 cut(s) 237
StyD4I CCNGG 3 cut(s) 182, 405, 411
StyI CCWWGG 2 cut(s) 26, 66
TaqI TCGA 1 cut(s) 484
TasI AATT 3 cut(s) 155, 218, 332
TfiI GAWTC 1 cut(s) 446
Tru1I TTAA 2 cut(s) 221, 365
Tru9I TTAA 2 cut(s) 221, 365
TscAI CASTG 1 cut(s) 334
TseI GCWGC 3 cut(s) 71, 353, 471
TspDTI ATGAA 1 cut(s) 456
TspRI CASTG 1 cut(s) 334
VneI GTGCAC 1 cut(s) 246
VspI ATTAAT 1 cut(s) 221
XcmI CCANNNNNNNNNTGG 1 cut(s) 486
XspI CTAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.