Rw0G022490

Interconversion of serine and glycine

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig01044
OG0001957
Physical Location & Seq
Forward (+)
39041 .. 42319
3279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G022490.1

Sequence Viewer

Length: 1038 bp
ATGCTACTGTGTGATAATTTTTTTAATTTTCAGACTGACACCAAAAAGATATCTGCTGTCTCGATATTCTTCGAGACAATGCCATACAGATTGGACGAAACCACAGGTTACATTGACTATGATCAGTTGGAGAAAAGTGCCACACTATTCAGACCCAAATTAATAGTAGCTGGTGCCAGTGCTTATGCACGCTTGTATGATTATGCACGTATACGCAAGGTCTGTGATAAGCAGAAAGCTATTTTGTTAGCTGATATGGCACACATCAGTGGATTGGTTGCGGCAGGTGTTATTCCATCTCCTTTTGAGTATGCAGATATTGTTACAACCACAACTCACAAGTCACTTCGTGGCCCTCGTGGGGCTATGATCTTCTTCAGGAAGGGGGTCAAAAATGTAAACAAGCAAGGGCAAGAAGTTATGTATGACTATGAAGACAAAATTAATCAGGCTGTCTTTCCTGGACTCCAAGGTGGTCCACACAATCACACCATATCTGGGTTAGCAGTTGCACTCAAGCAGGCCACAACTCCAGAGTTCAAAGCTTACCAAGAGCAAGTTCTCAGTAACTCCGCAAAATTTGCAGAGAGCTTGCTAGAGAAGGGCTATGATCTTGTCTCTGGTGGAACTGACAACCATTTAGTGTTGGTAAATTTGAGGGACAAGGGAATTGATGGCTCAAGAGTTGAAAAGGTTCTGGAAGCTGCTCATATTGCAGCAAATAAAAATACTGTCCCAGGGGATGTTTCTGCCATGGTCCCTGGTGGTATACGTATGGGAACCCCAGCTCTCACATCTAGGGGTTTTATGGAGGATGATTTTGAAAAAGTAGCAGAGTATTTTGATGCAGCCGTGAAGATAGCCTTGAAGATTAAGGCTGCTACAAAAGGTACCAAGTTAAAGGATTTTGTGGCAACTCTGGAATCAGATGGTCAAATACAATCTGAGATTGCAAAGCTACGCCACGAGGTTGAGCAGTATGCTAAAGAATTTCCAACTATTGGATTTGAGAAAGAAACAATGAGATACAAAGAATGA

Protein Analysis

345

Amino Acids

38.19

Weight (kDa)

7.07

Isoelectric Point (pI)

30.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SHMT PF00464 10 - 280 2.6e-141 Serine hydroxymethyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 275
Acc36I ACCTGC 1 cut(s) 275
Acc65I GGTACC 1 cut(s) 890
AccB1I GGYRCC 2 cut(s) 173, 890
AccB7I CCANNNNNTGG 1 cut(s) 1001
AccI GTMKAC 2 cut(s) 211, 769
AciI CCGC 2 cut(s) 281, 573
AcsI RAATTY 3 cut(s) 578, 652, 989
AcuI CTGAAG 1 cut(s) 361
AdeI CACNNNGTG 1 cut(s) 350
AfaI GTAC 1 cut(s) 892
AfiI CCNNNNNNNGG 3 cut(s) 361, 498, 1001
AgsI TTSAA 4 cut(s) 541, 689, 824, 868
AjnI CCWGG 3 cut(s) 460, 736, 760
AjuI GAANNNNNNNTTGG 2 cut(s) 543, 575
AleI CACNNNNGTG 1 cut(s) 267
AluBI AGCT 8 cut(s) 170, 239, 251, 545, 591, 704, 788, 958
AluI AGCT 8 cut(s) 170, 239, 251, 545, 591, 704, 788, 958
Alw26I GTCTC 3 cut(s) 64, 68, 622
AoxI GGCC 2 cut(s) 352, 522
ApeKI GCWGC 4 cut(s) 704, 716, 848, 878
ApoI RAATTY 3 cut(s) 578, 652, 989
AseI ATTAAT 2 cut(s) 161, 444
Asp700I GAANNNNTTC 1 cut(s) 693
Asp718I GGTACC 1 cut(s) 890
AspS9I GGNCC 3 cut(s) 353, 476, 757
AvaII GGWCC 2 cut(s) 476, 757
BanI GGYRCC 2 cut(s) 173, 890
BauI CACGAG 2 cut(s) 357, 965
BbsI GAAGAC 1 cut(s) 441
BbvI GCAGC 4 cut(s) 691, 728, 860, 865
BccI CCATC 3 cut(s) 304, 668, 923
BceAI ACGGC 1 cut(s) 836
BciT130I CCWGG 3 cut(s) 462, 738, 762
BclI TGATCA 1 cut(s) 121
BcoDI GTCTC 3 cut(s) 64, 68, 622
BfaI CTAG 2 cut(s) 596, 798
BfuAI ACCTGC 1 cut(s) 275
BisI GCNGC 5 cut(s) 282, 705, 717, 849, 879
BlsI GCNGC 5 cut(s) 283, 706, 718, 850, 880
Bme1390I CCNGG 3 cut(s) 462, 738, 762
Bme18I GGWCC 2 cut(s) 476, 757
BmgT120I GGNCC 3 cut(s) 353, 476, 757
BmiI GGNNCC 4 cut(s) 175, 759, 781, 892
BmrFI CCNGG 3 cut(s) 462, 738, 762
BmsI GCATC 1 cut(s) 835
BpiI GAAGAC 1 cut(s) 441
BpmI CTGGAG 1 cut(s) 516
BpuEI CTTGAG 2 cut(s) 500, 664
BsaAI YACGTR 2 cut(s) 209, 773
BsaJI CCNNGG 5 cut(s) 469, 736, 737, 753, 760
Bsc4I CCNNNNNNNGG 3 cut(s) 361, 498, 1001
Bse1I ACTGG 1 cut(s) 177
BseBI CCWGG 3 cut(s) 462, 738, 762
BseDI CCNNGG 5 cut(s) 469, 736, 737, 753, 760
BseGI GGATG 2 cut(s) 748, 820
BseLI CCNNNNNNNGG 3 cut(s) 361, 498, 1001
BseMII CTCAG 2 cut(s) 577, 936
BseNI ACTGG 1 cut(s) 177
BseXI GCAGC 4 cut(s) 691, 728, 860, 865
BseYI CCCAGC 1 cut(s) 784
BshFI GGCC 2 cut(s) 354, 524
BshNI GGYRCC 2 cut(s) 173, 890
BslFI GGGAC 3 cut(s) 674, 719, 743
BslI CCNNNNNNNGG 3 cut(s) 361, 498, 1001
BsmAI GTCTC 3 cut(s) 64, 68, 622
BsmFI GGGAC 3 cut(s) 674, 719, 743
BsnI GGCC 2 cut(s) 354, 524
Bsp143I GATC 3 cut(s) 121, 369, 610
Bsp19I CCATGG 1 cut(s) 753
BspACI CCGC 2 cut(s) 281, 573
BspANI GGCC 2 cut(s) 354, 524
BspCNI CTCAG 2 cut(s) 576, 937
BspLI GGNNCC 4 cut(s) 175, 759, 781, 892
BspMI ACCTGC 1 cut(s) 275
BspT107I GGYRCC 2 cut(s) 173, 890
BsrI ACTGG 1 cut(s) 177
BssECI CCNNGG 5 cut(s) 469, 736, 737, 753, 760
BssMI GATC 3 cut(s) 121, 369, 610
BssNAI GTATAC 2 cut(s) 212, 770
BssSI CACGAG 2 cut(s) 357, 965
BssT1I CCWWGG 2 cut(s) 469, 753
Bst1107I GTATAC 2 cut(s) 212, 770
Bst2BI CACGAG 2 cut(s) 357, 965
Bst2UI CCWGG 3 cut(s) 462, 738, 762
Bst4CI ACNGT 2 cut(s) 9, 733
BstAPI GCANNNNNTGC 1 cut(s) 581
BstBAI YACGTR 2 cut(s) 209, 773
BstC8I GCNNGC 3 cut(s) 190, 522, 593
BstDEI CTNAG 2 cut(s) 563, 945
BstDSI CCRYGG 1 cut(s) 753
BstF5I GGATG 2 cut(s) 748, 820
BstKTI GATC 3 cut(s) 124, 372, 613
BstMAI GTCTC 3 cut(s) 64, 68, 622
BstMBI GATC 3 cut(s) 121, 369, 610
BstMWI GCNNNNNNNGC 3 cut(s) 257, 581, 713
BstNI CCWGG 3 cut(s) 462, 738, 762
BstSCI CCNGG 3 cut(s) 460, 736, 760
BstSNI TACGTA 1 cut(s) 773
BstV1I GCAGC 4 cut(s) 691, 728, 860, 865
BstV2I GAAGAC 1 cut(s) 441
BstZ17I GTATAC 2 cut(s) 212, 770
BsuRI GGCC 2 cut(s) 354, 524
BtgI CCRYGG 1 cut(s) 753
BtsCI GGATG 2 cut(s) 748, 820
BtsIMutI CAGTG 2 cut(s) 184, 274
BveI ACCTGC 1 cut(s) 275
Cac8I GCNNGC 3 cut(s) 190, 522, 593
Cfr13I GGNCC 3 cut(s) 353, 476, 757
Csp6I GTAC 1 cut(s) 891
CviAII CATG 1 cut(s) 754
CviQI GTAC 1 cut(s) 891
DdeI CTNAG 2 cut(s) 563, 945
DpnI GATC 3 cut(s) 123, 371, 612
DpnII GATC 3 cut(s) 121, 369, 610
DraIII CACNNNGTG 1 cut(s) 350
Eco105I TACGTA 1 cut(s) 773
Eco130I CCWWGG 2 cut(s) 469, 753
Eco32I GATATC 1 cut(s) 51
Eco47I GGWCC 2 cut(s) 476, 757
Eco57I CTGAAG 1 cut(s) 361
EcoRII CCWGG 3 cut(s) 460, 736, 760
EcoRV GATATC 1 cut(s) 51
EcoT14I CCWWGG 2 cut(s) 469, 753
ErhI CCWWGG 2 cut(s) 469, 753
FaeI CATG 1 cut(s) 757
FalI AAGNNNNNCTT 2 cut(s) 848, 880
FaqI GGGAC 3 cut(s) 674, 719, 743
FatI CATG 1 cut(s) 753
FbaI TGATCA 1 cut(s) 121
FblI GTMKAC 2 cut(s) 211, 769
Fnu4HI GCNGC 5 cut(s) 282, 705, 717, 849, 879
FokI GGATG 2 cut(s) 755, 827
Fsp4HI GCNGC 5 cut(s) 282, 705, 717, 849, 879
FspBI CTAG 2 cut(s) 596, 798
GluI GCNGC 5 cut(s) 282, 705, 717, 849, 879
GsaI CCCAGC 1 cut(s) 788
GsuI CTGGAG 1 cut(s) 516
HaeIII GGCC 2 cut(s) 354, 524
Hin1II CATG 1 cut(s) 757
HindIII AAGCTT 1 cut(s) 543
HinfI GANTC 2 cut(s) 465, 923
Hpy166II GTNNAC 4 cut(s) 212, 400, 479, 770
Hpy188I TCNGA 4 cut(s) 33, 152, 928, 946
Hpy188III TCNNGA 7 cut(s) 61, 73, 379, 533, 681, 698, 920
Hpy8I GTNNAC 4 cut(s) 212, 400, 479, 770
HpyAV CCTTC 2 cut(s) 376, 595
HpyCH4III ACNGT 2 cut(s) 9, 733
HpyCH4IV ACGT 2 cut(s) 208, 772
HpyCH4V TGCA 8 cut(s) 188, 206, 314, 512, 584, 716, 848, 953
HpyF10VI GCNNNNNNNGC 3 cut(s) 257, 581, 713
HpyF3I CTNAG 2 cut(s) 563, 945
HpySE526I ACGT 2 cut(s) 208, 772
Hsp92II CATG 1 cut(s) 757
KpnI GGTACC 1 cut(s) 894
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 3 cut(s) 121, 369, 610
Lsp1109I GCAGC 4 cut(s) 691, 728, 860, 865
LweI GCATC 1 cut(s) 835
MaeI CTAG 2 cut(s) 596, 798
MaeII ACGT 2 cut(s) 208, 772
MaeIII GTNAC 4 cut(s) 107, 322, 342, 566
MalI GATC 3 cut(s) 123, 371, 612
MboI GATC 3 cut(s) 121, 369, 610
MboII GAAGA 6 cut(s) 61, 364, 367, 446, 868, 880
MluCI AATT 8 cut(s) 16, 25, 158, 441, 578, 652, 669, 989
MlyI GAGTC 1 cut(s) 459
MmeI TCCRAC 2 cut(s) 108, 1019
MnlI CCTC 4 cut(s) 366, 651, 805, 961
MroXI GAANNNNTTC 1 cut(s) 693
MseI TTAA 5 cut(s) 24, 161, 444, 873, 899
MslI CAYNNNNRTG 1 cut(s) 267
MspR9I CCNGG 3 cut(s) 462, 738, 762
MvaI CCWGG 3 cut(s) 462, 738, 762
MwoI GCNNNNNNNGC 3 cut(s) 257, 581, 713
NcoI CCATGG 1 cut(s) 753
NdeII GATC 3 cut(s) 121, 369, 610
NlaIII CATG 1 cut(s) 757
NlaIV GGNNCC 4 cut(s) 175, 759, 781, 892
NmuCI GTSAC 1 cut(s) 342
OliI CACNNNNGTG 1 cut(s) 267
PaqCI CACCTGC 1 cut(s) 275
PasI CCCWGGG 1 cut(s) 737
PcsI WCGNNNNNNNCGW 1 cut(s) 355
PdmI GAANNNNTTC 1 cut(s) 693
PfeI GAWTC 1 cut(s) 923
PflMI CCANNNNNTGG 1 cut(s) 1001
PfoI TCCNGGA 1 cut(s) 460
PkrI GCNGC 5 cut(s) 283, 706, 718, 850, 880
PleI GAGTC 1 cut(s) 459
PpsI GAGTC 1 cut(s) 459
Ppu21I YACGTR 2 cut(s) 209, 773
PshBI ATTAAT 2 cut(s) 161, 444
Psp6I CCWGG 3 cut(s) 460, 736, 760
PspFI CCCAGC 1 cut(s) 784
PspGI CCWGG 3 cut(s) 460, 736, 760
PspN4I GGNNCC 4 cut(s) 175, 759, 781, 892
PspPI GGNCC 3 cut(s) 353, 476, 757
RsaI GTAC 1 cut(s) 892
RsaNI GTAC 1 cut(s) 891
RseI CAYNNNNRTG 1 cut(s) 267
SaqAI TTAA 5 cut(s) 24, 161, 444, 873, 899
SatI GCNGC 5 cut(s) 282, 705, 717, 849, 879
Sau3AI GATC 3 cut(s) 121, 369, 610
Sau96I GGNCC 3 cut(s) 353, 476, 757
SchI GAGTC 1 cut(s) 459
ScrFI CCNGG 3 cut(s) 462, 738, 762
SfaNI GCATC 1 cut(s) 835
SinI GGWCC 2 cut(s) 476, 757
SmiMI CAYNNNNRTG 1 cut(s) 267
SmlI CTYRAG 2 cut(s) 515, 679
SmoI CTYRAG 2 cut(s) 515, 679
SnaBI TACGTA 1 cut(s) 773
Sse9I AATT 8 cut(s) 16, 25, 158, 441, 578, 652, 669, 989
SsiI CCGC 2 cut(s) 281, 573
SspMI CTAG 2 cut(s) 596, 798
StyD4I CCNGG 3 cut(s) 460, 736, 760
StyI CCWWGG 2 cut(s) 469, 753
TaaI ACNGT 2 cut(s) 9, 733
TaiI ACGT 2 cut(s) 211, 775
TaqI TCGA 2 cut(s) 62, 72
TasI AATT 8 cut(s) 16, 25, 158, 441, 578, 652, 669, 989
TauI GCSGC 1 cut(s) 284
TfiI GAWTC 1 cut(s) 923
Tru1I TTAA 5 cut(s) 24, 161, 444, 873, 899
Tru9I TTAA 5 cut(s) 24, 161, 444, 873, 899
TscAI CASTG 2 cut(s) 184, 274
TseFI GTSAC 1 cut(s) 342
TseI GCWGC 4 cut(s) 704, 716, 848, 878
Tsp45I GTSAC 1 cut(s) 342
TspDTI ATGAA 1 cut(s) 447
TspRI CASTG 2 cut(s) 184, 274
Van91I CCANNNNNTGG 1 cut(s) 1001
VpaK11BI GGWCC 2 cut(s) 476, 757
VspI ATTAAT 2 cut(s) 161, 444
XapI RAATTY 3 cut(s) 578, 652, 989
XmiI GTMKAC 2 cut(s) 211, 769
XmnI GAANNNNTTC 1 cut(s) 693
XspI CTAG 2 cut(s) 596, 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.