Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001957

Physical Location & Seq

Genomic Coordinates Reverse (-)

21434069 .. 21438295

Gene Structure 4227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG221600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGTTTGACGCCAAATTCCAGATGAGGATGAGCATGGAGAGACACTGTGGGTCTTGTGGAGAGAACTATGCATCTGATGAATTTTGGATTTGCTGCGATGTCTGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGAATGAAAGGTTGGAGAAAAGTGCCACACTATTCAGACCCAAATTAATAGTTGCTGGTGCTAGTGCTTGTGCACGCTTGTACGACCATGCACGCATACGCAAGGTCTGTGATAAGCAGAAAGCTATTTTGTTAGCTGATATGGCACACATCAGTGGATTGGTTACGGCAGGTGTTATTCCATCTCCTTTTAAGTATGCAGATATTGTTACAACCACAACTCATAAGTCACTTCGTGGCCCTCGTGAGTCTATGATCTTCTTCAGGAAGGGGGTCATAGCCCCACAAGGCCACAACTCCAGAGTTCAAAGCTTACTAAGAGCAAGTTCTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0004372 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005829 GO:0006082 GO:0006520 GO:0006544 GO:0006563 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009069 GO:0009987 GO:0016020 GO:0016740 GO:0016741 GO:0016742 GO:0017144 GO:0019752 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0042133 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0046914 GO:0050897 GO:0065007 GO:0065008 GO:0070469 GO:0071704 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901564 GO:1901605 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00260 ko00460 ko00630 ko00670 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko01523 map00260 map00460 map00630 map00670 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map01523

Pfam Domains

Protein Families

SHMT

Protein Analysis

155

Amino Acids

17.44

Weight (kDa)

9.43

Isoelectric Point (pI)

43.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	16 - 48	4.3e-07	PHD-finger
SHMT	PF00464	43 - 138	1.1e-43	Serine hydroxymethyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26780 AT5G26780 AT5G26780 AT5G26780
fragaria_vesca	FvH4_5g34000 FvH4_5g34000 FvH4_5g34000
malus_domestica	MD08G1206800.v1.1 MD15G1390500.v1.1
prunus_persica	Prupe.1G539400_v2.0.a1 Prupe.1G539400_v2.0.a1 Prupe.1G539400_v2.0.a1 Prupe.1G539400_v2.0.a1
pyrus_communis	pycom08g17860
rosa_chinensis	RchiOBHm_Chr5g0052761 RchiOBHm_Chr7g0233441 RchiOBHm_Chr7g0235741
rosa_laevigata	RLG00000001270 RLG00000013832 RLG00000035486
rosa_multiflora	Rmu_sc0000029.1_g000053 Rmu_sc0006510.1_g000006
rosa_roxburghii	Rroxscaffold_3G00227300 Rroxscaffold_3G00241170
rosa_rugosa	Rorug07G0280700
rosa_samantha	Rh1CG020600 Rh1CG022300 Rh2AG156000 Rh2BG162300 Rh2BG221600 Rh2DG161400 Rh4DG362000 Rh5BG352800 Rh5CG247000 Rh5CG419500 Rh5DG369100 Rh7AG154700 Rh7AG436500 Rh7AG488000 Rh7BG409600 Rh7CG456400 Rh7DG425700
rosa_wichuraiana	Rw0G022490 Rw7G035990 Rw7G036020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	293
Acc36I	ACCTGC	1 cut(s)	293
AcsI	RAATTY	2 cut(s)	14, 80
AcuI	CTGAAG	1 cut(s)	379
AcyI	GRCGYC	1 cut(s)	9
AdeI	CACNNNGTG	1 cut(s)	368
AfaI	GTAC	1 cut(s)	215
AgsI	TTSAA	1 cut(s)	440
AjuI	GAANNNNNNNTTGG	2 cut(s)	128, 160
AleI	CACNNNNGTG	1 cut(s)	285
AluBI	AGCT	3 cut(s)	257, 269, 444
AluI	AGCT	3 cut(s)	257, 269, 444
Alw21I	GWGCWC	1 cut(s)	208
Alw26I	GTCTC	1 cut(s)	34
Alw44I	GTGCAC	1 cut(s)	204
AoxI	GGCC	2 cut(s)	370, 421
ApaLI	GTGCAC	1 cut(s)	204
ApeKI	GCWGC	1 cut(s)	93
ApoI	RAATTY	2 cut(s)	14, 80
AseI	ATTAAT	1 cut(s)	179
Asp700I	GAANNNNTTC	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	371
BaeGI	GKGCMC	1 cut(s)	208
BauI	CACGAG	1 cut(s)	375
Bbv12I	GWGCWC	1 cut(s)	208
BbvI	GCAGC	1 cut(s)	80
BccI	CCATC	1 cut(s)	322
BceAI	ACGGC	1 cut(s)	315
BcoDI	GTCTC	1 cut(s)	34
BfaI	CTAG	1 cut(s)	195
BfuAI	ACCTGC	1 cut(s)	293
BisI	GCNGC	1 cut(s)	94
BlsI	GCNGC	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	371
BmiI	GGNNCC	1 cut(s)	116
BmsI	GCATC	1 cut(s)	80
BpmI	CTGGAG	1 cut(s)	415
BsaHI	GRCGYC	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	118
BseDI	CCNNGG	1 cut(s)	118
BseGI	GGATG	1 cut(s)	33
BseSI	GKGCMC	1 cut(s)	208
BseXI	GCAGC	1 cut(s)	80
BshFI	GGCC	2 cut(s)	372, 423
BsiHKAI	GWGCWC	1 cut(s)	208
BsmAI	GTCTC	1 cut(s)	34
BsnI	GGCC	2 cut(s)	372, 423
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp143I	GATC	1 cut(s)	387
Bsp19I	CCATGG	1 cut(s)	118
BspANI	GGCC	2 cut(s)	372, 423
BspLI	GGNNCC	1 cut(s)	116
BspMI	ACCTGC	1 cut(s)	293
BssECI	CCNNGG	1 cut(s)	118
BssMI	GATC	1 cut(s)	387
BssNI	GRCGYC	1 cut(s)	9
BssSI	CACGAG	1 cut(s)	375
BssT1I	CCWWGG	1 cut(s)	118
Bst2BI	CACGAG	1 cut(s)	375
Bst4CI	ACNGT	1 cut(s)	47
BstACI	GRCGYC	1 cut(s)	9
BstC8I	GCNNGC	2 cut(s)	208, 226
BstDEI	CTNAG	2 cut(s)	449, 462
BstDSI	CCRYGG	1 cut(s)	118
BstF5I	GGATG	1 cut(s)	33
BstKTI	GATC	1 cut(s)	390
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	387
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstSLI	GKGCMC	1 cut(s)	208
BstV1I	GCAGC	1 cut(s)	80
BsuRI	GGCC	2 cut(s)	372, 423
BtgI	CCRYGG	1 cut(s)	118
BtgZI	GCGATG	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	33
BtsIMutI	CAGTG	2 cut(s)	43, 292
BveI	ACCTGC	1 cut(s)	293
Cac8I	GCNNGC	2 cut(s)	208, 226
Cfr13I	GGNCC	1 cut(s)	371
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	3 cut(s)	34, 119, 221
CviJI	RGCY	6 cut(s)	257, 269, 372, 413, 423, 444
CviKI_1	RGCY	6 cut(s)	257, 269, 372, 413, 423, 444
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	2 cut(s)	449, 462
DpnI	GATC	1 cut(s)	389
DpnII	GATC	1 cut(s)	387
DraIII	CACNNNGTG	1 cut(s)	368
Eco130I	CCWWGG	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	379
EcoT14I	CCWWGG	1 cut(s)	118
EcoT22I	ATGCAT	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	118
FaeI	CATG	3 cut(s)	37, 122, 224
FatI	CATG	3 cut(s)	33, 118, 220
Fnu4HI	GCNGC	1 cut(s)	94
FokI	GGATG	1 cut(s)	40
Fsp4HI	GCNGC	1 cut(s)	94
FspBI	CTAG	1 cut(s)	195
GluI	GCNGC	1 cut(s)	94
GsuI	CTGGAG	1 cut(s)	415
HaeIII	GGCC	2 cut(s)	372, 423
HgaI	GACGC	1 cut(s)	17
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	3 cut(s)	37, 122, 224
HindIII	AAGCTT	1 cut(s)	442
HinfI	GANTC	1 cut(s)	380
Hpy166II	GTNNAC	1 cut(s)	206
Hpy188I	TCNGA	2 cut(s)	76, 170
Hpy188III	TCNNGA	4 cut(s)	19, 377, 397, 432
Hpy8I	GTNNAC	1 cut(s)	206
HpyAV	CCTTC	1 cut(s)	394
HpyCH4III	ACNGT	1 cut(s)	47
HpyCH4V	TGCA	4 cut(s)	71, 206, 224, 332
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	2 cut(s)	449, 462
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	3 cut(s)	37, 122, 224
Kzo9I	GATC	1 cut(s)	387
LpnPI	CCDG	5 cut(s)	32, 174, 288, 382, 445
Lsp1109I	GCAGC	1 cut(s)	80
LweI	GCATC	1 cut(s)	80
MaeI	CTAG	1 cut(s)	195
MaeIII	GTNAC	3 cut(s)	295, 340, 360
MalI	GATC	1 cut(s)	389
MboI	GATC	1 cut(s)	387
MboII	GAAGA	3 cut(s)	145, 382, 385
MhlI	GDGCHC	1 cut(s)	208
MluCI	AATT	3 cut(s)	14, 80, 176
MlyI	GAGTC	1 cut(s)	389
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	2 cut(s)	18, 384
Mph1103I	ATGCAT	1 cut(s)	73
MroXI	GAANNNNTTC	1 cut(s)	113
MseI	TTAA	2 cut(s)	179, 324
MslI	CAYNNNNRTG	1 cut(s)	285
MwoI	GCNNNNNNNGC	1 cut(s)	275
NcoI	CCATGG	1 cut(s)	118
NdeII	GATC	1 cut(s)	387
NlaIII	CATG	3 cut(s)	37, 122, 224
NlaIV	GGNNCC	1 cut(s)	116
NmuCI	GTSAC	1 cut(s)	360
NsiI	ATGCAT	1 cut(s)	73
OliI	CACNNNNGTG	1 cut(s)	285
PaqCI	CACCTGC	1 cut(s)	293
PcsI	WCGNNNNNNNCGW	1 cut(s)	373
PdmI	GAANNNNTTC	1 cut(s)	113
PkrI	GCNGC	1 cut(s)	95
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
PshBI	ATTAAT	1 cut(s)	179
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	1 cut(s)	371
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
RseI	CAYNNNNRTG	1 cut(s)	285
SaqAI	TTAA	2 cut(s)	179, 324
SatI	GCNGC	1 cut(s)	94
Sau3AI	GATC	1 cut(s)	387
Sau96I	GGNCC	1 cut(s)	371
SchI	GAGTC	1 cut(s)	389
SduI	GDGCHC	1 cut(s)	208
SetI	ASST	6 cut(s)	146, 240, 259, 271, 307, 446
SfaNI	GCATC	1 cut(s)	80
SmiMI	CAYNNNNRTG	1 cut(s)	285
Sse9I	AATT	3 cut(s)	14, 80, 176
SspMI	CTAG	1 cut(s)	195
StyI	CCWWGG	1 cut(s)	118
TaaI	ACNGT	1 cut(s)	47
TasI	AATT	3 cut(s)	14, 80, 176
Tru1I	TTAA	2 cut(s)	179, 324
Tru9I	TTAA	2 cut(s)	179, 324
TscAI	CASTG	2 cut(s)	50, 292
TseFI	GTSAC	1 cut(s)	360
TseI	GCWGC	1 cut(s)	93
Tsp45I	GTSAC	1 cut(s)	360
TspDTI	ATGAA	2 cut(s)	93, 153
TspRI	CASTG	2 cut(s)	50, 292
VneI	GTGCAC	1 cut(s)	204
VspI	ATTAAT	1 cut(s)	179
XapI	RAATTY	2 cut(s)	14, 80
XmnI	GAANNNNTTC	1 cut(s)	113
XspI	CTAG	1 cut(s)	195
Zsp2I	ATGCAT	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.