Rh7DG425700

Interconversion of serine and glycine

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001957
Physical Location & Seq
Forward (+)
60105247 .. 60112144
6898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG425700.1

Sequence Viewer

Length: 1053 bp
ATGGCTCTTGATCTGCCTCATGGTGGACATCTTTCTCATGGTTATCAGACTGACACCAAAAAGATATCTGCTGTCTCGATATTCTTCGAGACAATGCCATACAGATTGGACGAAACCACAGGTTACATTGACTATGATCAGTTGGAGAAAAGTGCCACACTATTCAGACCCAAATTAATAGTAGCTGGTGCCAGTGCTTATGCACGCTTGTATGATTATGCACGTATACGCAAGGTCTGTGATAAGCAGAAAGCTATTTTGTTAGCTGATATGGCACACATCAGTGGATTGGTTGCGGCAGGTGTTATTCCATCTCCTTTTGAGTATGCAGATATTGTTACAACCACAACTCACAAGTCACTTCGTGGCCCTCGTGGGGCTATGATCTTCTTCAGGAAGGGGGTCAAAAATGTAAACAAGCAAGGGCAAGAAGTTATGTATGACTATGAAGACAAAATTAATCAGGCTGTCTTTCCTGGACTCCAAGGTGGTCCACACAATCACACCATATCTGGGTTAGCAGTTGCACTCAAGCAGGCCACAACTCCAGAGTTCAAAGCTTACCAAGAGCAAGTTCTCAGTAACTCCGCAAAATTTGCAGAGAGCTTGCTCGAGAAGGGCTATGATCTTGTCTCTGGTGGAACTGACAACCATTTAGTGTTGGTAAATTTGAGGGACAAGGGAATTGATGGCTCAAGAGTTGAAAAGGTTCTGGAAGCTGCTCATATTGCAGCAAATAAAAATACTGTCCCAGGGGATGTTTCTGCCATGGTCCCTGGTGGTATACGTATGGGAACCCCGGCTCTCACATCTAGGGGTTTTATGGAGGATGATTTTGAAAAAGTAGCAGAGTATTTTGATGCAGCCGTGAAGATAGCCTTGAAGATTAAGGCTGCTACAAAAGGTACCAAGTTAAAGGATTTTGTGGCAACTCTGGAATCAGATGGTCAAATACAATCTGAGATTGCAAAGCTACGCCACGAGGTTGAGCAGTATGCTAAAGAATTTCCAACTATTGGATTTGAGAAAGAAACAATGAGATACAAAGAATGA

Protein Analysis

350

Amino Acids

38.53

Weight (kDa)

7.17

Isoelectric Point (pI)

31.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SHMT PF00464 1 - 285 9.6e-152 Serine hydroxymethyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 290
Acc36I ACCTGC 1 cut(s) 290
Acc65I GGTACC 1 cut(s) 905
AccB1I GGYRCC 2 cut(s) 188, 905
AccB7I CCANNNNNTGG 1 cut(s) 1016
AccI GTMKAC 2 cut(s) 226, 784
AciI CCGC 2 cut(s) 296, 588
AcsI RAATTY 3 cut(s) 593, 667, 1004
AcuI CTGAAG 1 cut(s) 376
AdeI CACNNNGTG 1 cut(s) 365
AfaI GTAC 1 cut(s) 907
AfiI CCNNNNNNNGG 4 cut(s) 23, 376, 513, 1016
AgsI TTSAA 4 cut(s) 556, 704, 839, 883
AjnI CCWGG 3 cut(s) 475, 751, 775
AjuI GAANNNNNNNTTGG 2 cut(s) 558, 590
AleI CACNNNNGTG 1 cut(s) 282
AluBI AGCT 7 cut(s) 185, 254, 266, 560, 606, 719, 973
AluI AGCT 7 cut(s) 185, 254, 266, 560, 606, 719, 973
Alw26I GTCTC 3 cut(s) 79, 83, 637
Ama87I CYCGRG 1 cut(s) 611
AoxI GGCC 2 cut(s) 367, 537
ApeKI GCWGC 4 cut(s) 719, 731, 863, 893
ApoI RAATTY 3 cut(s) 593, 667, 1004
AseI ATTAAT 2 cut(s) 176, 459
Asp700I GAANNNNTTC 1 cut(s) 708
Asp718I GGTACC 1 cut(s) 905
AspS9I GGNCC 3 cut(s) 368, 491, 772
AsuC2I CCSGG 1 cut(s) 800
AvaI CYCGRG 1 cut(s) 611
AvaII GGWCC 2 cut(s) 491, 772
BanI GGYRCC 2 cut(s) 188, 905
BauI CACGAG 2 cut(s) 372, 980
BbsI GAAGAC 1 cut(s) 456
BbvI GCAGC 4 cut(s) 706, 743, 875, 880
BccI CCATC 3 cut(s) 319, 683, 938
BceAI ACGGC 1 cut(s) 851
BciT130I CCWGG 3 cut(s) 477, 753, 777
BclI TGATCA 1 cut(s) 136
BcnI CCSGG 1 cut(s) 800
BcoDI GTCTC 3 cut(s) 79, 83, 637
BfaI CTAG 1 cut(s) 813
BfuAI ACCTGC 1 cut(s) 290
BisI GCNGC 5 cut(s) 297, 720, 732, 864, 894
BlsI GCNGC 5 cut(s) 298, 721, 733, 865, 895
Bme1390I CCNGG 4 cut(s) 477, 753, 777, 800
Bme18I GGWCC 2 cut(s) 491, 772
BmeT110I CYCGRG 1 cut(s) 611
BmgT120I GGNCC 3 cut(s) 368, 491, 772
BmiI GGNNCC 4 cut(s) 190, 774, 796, 907
BmrFI CCNGG 4 cut(s) 477, 753, 777, 800
BmsI GCATC 1 cut(s) 850
BpiI GAAGAC 1 cut(s) 456
BpmI CTGGAG 1 cut(s) 531
BpuEI CTTGAG 2 cut(s) 515, 679
BpuMI CCSGG 1 cut(s) 800
BsaAI YACGTR 2 cut(s) 224, 788
BsaJI CCNNGG 6 cut(s) 484, 751, 752, 768, 775, 798
Bsc4I CCNNNNNNNGG 4 cut(s) 23, 376, 513, 1016
Bse1I ACTGG 1 cut(s) 192
BseBI CCWGG 3 cut(s) 477, 753, 777
BseDI CCNNGG 6 cut(s) 484, 751, 752, 768, 775, 798
BseGI GGATG 2 cut(s) 763, 835
BseLI CCNNNNNNNGG 4 cut(s) 23, 376, 513, 1016
BseMII CTCAG 2 cut(s) 592, 951
BseNI ACTGG 1 cut(s) 192
BseXI GCAGC 4 cut(s) 706, 743, 875, 880
BshFI GGCC 2 cut(s) 369, 539
BshNI GGYRCC 2 cut(s) 188, 905
BsiHKCI CYCGRG 1 cut(s) 611
BsiSI CCGG 1 cut(s) 800
BslFI GGGAC 3 cut(s) 689, 734, 758
BslI CCNNNNNNNGG 4 cut(s) 23, 376, 513, 1016
BsmAI GTCTC 3 cut(s) 79, 83, 637
BsmFI GGGAC 3 cut(s) 689, 734, 758
BsnI GGCC 2 cut(s) 369, 539
BsoBI CYCGRG 1 cut(s) 611
Bsp143I GATC 4 cut(s) 10, 136, 384, 625
Bsp19I CCATGG 1 cut(s) 768
BspACI CCGC 2 cut(s) 296, 588
BspANI GGCC 2 cut(s) 369, 539
BspCNI CTCAG 2 cut(s) 591, 952
BspLI GGNNCC 4 cut(s) 190, 774, 796, 907
BspMI ACCTGC 1 cut(s) 290
BspT107I GGYRCC 2 cut(s) 188, 905
BsrI ACTGG 1 cut(s) 192
BssECI CCNNGG 6 cut(s) 484, 751, 752, 768, 775, 798
BssMI GATC 4 cut(s) 10, 136, 384, 625
BssNAI GTATAC 2 cut(s) 227, 785
BssSI CACGAG 2 cut(s) 372, 980
BssT1I CCWWGG 2 cut(s) 484, 768
Bst1107I GTATAC 2 cut(s) 227, 785
Bst2BI CACGAG 2 cut(s) 372, 980
Bst2UI CCWGG 3 cut(s) 477, 753, 777
Bst4CI ACNGT 1 cut(s) 748
BstAPI GCANNNNNTGC 1 cut(s) 596
BstBAI YACGTR 2 cut(s) 224, 788
BstC8I GCNNGC 3 cut(s) 205, 537, 608
BstDEI CTNAG 2 cut(s) 578, 960
BstDSI CCRYGG 1 cut(s) 768
BstF5I GGATG 2 cut(s) 763, 835
BstKTI GATC 4 cut(s) 13, 139, 387, 628
BstMAI GTCTC 3 cut(s) 79, 83, 637
BstMBI GATC 4 cut(s) 10, 136, 384, 625
BstMWI GCNNNNNNNGC 3 cut(s) 272, 596, 728
BstNI CCWGG 3 cut(s) 477, 753, 777
BstSCI CCNGG 4 cut(s) 475, 751, 775, 798
BstSNI TACGTA 1 cut(s) 788
BstV1I GCAGC 4 cut(s) 706, 743, 875, 880
BstV2I GAAGAC 1 cut(s) 456
BstZ17I GTATAC 2 cut(s) 227, 785
BsuRI GGCC 2 cut(s) 369, 539
BtgI CCRYGG 1 cut(s) 768
BtsCI GGATG 2 cut(s) 763, 835
BtsIMutI CAGTG 2 cut(s) 199, 289
BveI ACCTGC 1 cut(s) 290
Cac8I GCNNGC 3 cut(s) 205, 537, 608
Cfr13I GGNCC 3 cut(s) 368, 491, 772
Csp6I GTAC 1 cut(s) 906
CviAII CATG 3 cut(s) 20, 38, 769
CviQI GTAC 1 cut(s) 906
DdeI CTNAG 2 cut(s) 578, 960
DpnI GATC 4 cut(s) 12, 138, 386, 627
DpnII GATC 4 cut(s) 10, 136, 384, 625
DraIII CACNNNGTG 1 cut(s) 365
Eco105I TACGTA 1 cut(s) 788
Eco130I CCWWGG 2 cut(s) 484, 768
Eco32I GATATC 1 cut(s) 66
Eco47I GGWCC 2 cut(s) 491, 772
Eco57I CTGAAG 1 cut(s) 376
Eco88I CYCGRG 1 cut(s) 611
EcoRII CCWGG 3 cut(s) 475, 751, 775
EcoRV GATATC 1 cut(s) 66
EcoT14I CCWWGG 2 cut(s) 484, 768
ErhI CCWWGG 2 cut(s) 484, 768
FaeI CATG 3 cut(s) 23, 41, 772
FalI AAGNNNNNCTT 2 cut(s) 863, 895
FaqI GGGAC 3 cut(s) 689, 734, 758
FatI CATG 3 cut(s) 19, 37, 768
FbaI TGATCA 1 cut(s) 136
FblI GTMKAC 2 cut(s) 226, 784
Fnu4HI GCNGC 5 cut(s) 297, 720, 732, 864, 894
FokI GGATG 2 cut(s) 770, 842
Fsp4HI GCNGC 5 cut(s) 297, 720, 732, 864, 894
FspBI CTAG 1 cut(s) 813
GluI GCNGC 5 cut(s) 297, 720, 732, 864, 894
GsuI CTGGAG 1 cut(s) 531
HaeIII GGCC 2 cut(s) 369, 539
HapII CCGG 1 cut(s) 800
Hin1II CATG 3 cut(s) 23, 41, 772
HindIII AAGCTT 1 cut(s) 558
HinfI GANTC 2 cut(s) 480, 938
HpaII CCGG 1 cut(s) 800
Hpy166II GTNNAC 5 cut(s) 26, 227, 415, 494, 785
Hpy188I TCNGA 4 cut(s) 48, 167, 943, 961
Hpy188III TCNNGA 9 cut(s) 8, 76, 88, 394, 548, 613, 696, 713, 935
Hpy8I GTNNAC 5 cut(s) 26, 227, 415, 494, 785
HpyAV CCTTC 2 cut(s) 391, 610
HpyCH4III ACNGT 1 cut(s) 748
HpyCH4IV ACGT 2 cut(s) 223, 787
HpyCH4V TGCA 8 cut(s) 203, 221, 329, 527, 599, 731, 863, 968
HpyF10VI GCNNNNNNNGC 3 cut(s) 272, 596, 728
HpyF3I CTNAG 2 cut(s) 578, 960
HpySE526I ACGT 2 cut(s) 223, 787
Hsp92II CATG 3 cut(s) 23, 41, 772
KpnI GGTACC 1 cut(s) 909
Ksp22I TGATCA 1 cut(s) 136
Kzo9I GATC 4 cut(s) 10, 136, 384, 625
Lsp1109I GCAGC 4 cut(s) 706, 743, 875, 880
LweI GCATC 1 cut(s) 850
MaeI CTAG 1 cut(s) 813
MaeII ACGT 2 cut(s) 223, 787
MaeIII GTNAC 4 cut(s) 122, 337, 357, 581
MalI GATC 4 cut(s) 12, 138, 386, 627
MboI GATC 4 cut(s) 10, 136, 384, 625
MboII GAAGA 6 cut(s) 76, 379, 382, 461, 883, 895
MluCI AATT 6 cut(s) 173, 456, 593, 667, 684, 1004
MlyI GAGTC 1 cut(s) 474
MmeI TCCRAC 2 cut(s) 123, 1034
MnlI CCTC 5 cut(s) 27, 381, 666, 820, 976
MroXI GAANNNNTTC 1 cut(s) 708
MseI TTAA 4 cut(s) 176, 459, 888, 914
MslI CAYNNNNRTG 1 cut(s) 282
MspI CCGG 1 cut(s) 800
MspR9I CCNGG 4 cut(s) 477, 753, 777, 800
MvaI CCWGG 3 cut(s) 477, 753, 777
MwoI GCNNNNNNNGC 3 cut(s) 272, 596, 728
NciI CCSGG 1 cut(s) 800
NcoI CCATGG 1 cut(s) 768
NdeII GATC 4 cut(s) 10, 136, 384, 625
NlaIII CATG 3 cut(s) 23, 41, 772
NlaIV GGNNCC 4 cut(s) 190, 774, 796, 907
NmuCI GTSAC 1 cut(s) 357
OliI CACNNNNGTG 1 cut(s) 282
PaeR7I CTCGAG 1 cut(s) 611
PaqCI CACCTGC 1 cut(s) 290
PasI CCCWGGG 1 cut(s) 752
PcsI WCGNNNNNNNCGW 1 cut(s) 370
PdmI GAANNNNTTC 1 cut(s) 708
PfeI GAWTC 1 cut(s) 938
PflMI CCANNNNNTGG 1 cut(s) 1016
PfoI TCCNGGA 1 cut(s) 475
PkrI GCNGC 5 cut(s) 298, 721, 733, 865, 895
PleI GAGTC 1 cut(s) 474
PpsI GAGTC 1 cut(s) 474
Ppu21I YACGTR 2 cut(s) 224, 788
PshBI ATTAAT 2 cut(s) 176, 459
Psp6I CCWGG 3 cut(s) 475, 751, 775
PspGI CCWGG 3 cut(s) 475, 751, 775
PspN4I GGNNCC 4 cut(s) 190, 774, 796, 907
PspPI GGNCC 3 cut(s) 368, 491, 772
RsaI GTAC 1 cut(s) 907
RsaNI GTAC 1 cut(s) 906
RseI CAYNNNNRTG 1 cut(s) 282
SaqAI TTAA 4 cut(s) 176, 459, 888, 914
SatI GCNGC 5 cut(s) 297, 720, 732, 864, 894
Sau3AI GATC 4 cut(s) 10, 136, 384, 625
Sau96I GGNCC 3 cut(s) 368, 491, 772
SchI GAGTC 1 cut(s) 474
ScrFI CCNGG 4 cut(s) 477, 753, 777, 800
SfaNI GCATC 1 cut(s) 850
Sfr274I CTCGAG 1 cut(s) 611
SinI GGWCC 2 cut(s) 491, 772
SlaI CTCGAG 1 cut(s) 611
SmiMI CAYNNNNRTG 1 cut(s) 282
SmlI CTYRAG 3 cut(s) 530, 611, 694
SmoI CTYRAG 3 cut(s) 530, 611, 694
SnaBI TACGTA 1 cut(s) 788
Sse9I AATT 6 cut(s) 173, 456, 593, 667, 684, 1004
SsiI CCGC 2 cut(s) 296, 588
SspMI CTAG 1 cut(s) 813
StyD4I CCNGG 4 cut(s) 475, 751, 775, 798
StyI CCWWGG 2 cut(s) 484, 768
TaaI ACNGT 1 cut(s) 748
TaiI ACGT 2 cut(s) 226, 790
TaqI TCGA 3 cut(s) 77, 87, 612
TasI AATT 6 cut(s) 173, 456, 593, 667, 684, 1004
TauI GCSGC 1 cut(s) 299
TfiI GAWTC 1 cut(s) 938
Tru1I TTAA 4 cut(s) 176, 459, 888, 914
Tru9I TTAA 4 cut(s) 176, 459, 888, 914
TscAI CASTG 2 cut(s) 199, 289
TseFI GTSAC 1 cut(s) 357
TseI GCWGC 4 cut(s) 719, 731, 863, 893
Tsp45I GTSAC 1 cut(s) 357
TspDTI ATGAA 1 cut(s) 462
TspRI CASTG 2 cut(s) 199, 289
Van91I CCANNNNNTGG 1 cut(s) 1016
VpaK11BI GGWCC 2 cut(s) 491, 772
VspI ATTAAT 2 cut(s) 176, 459
XapI RAATTY 3 cut(s) 593, 667, 1004
XhoI CTCGAG 1 cut(s) 611
XmiI GTMKAC 2 cut(s) 226, 784
XmnI GAANNNNTTC 1 cut(s) 708
XspI CTAG 1 cut(s) 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.