Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006510.1

Orthogroup ID

OG0001957

Physical Location & Seq

Genomic Coordinates Reverse (-)

22288 .. 24387

Gene Structure 2100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006510.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

atggcacacatcagtggattggttgcggcaggtgttttttcatttccttttgagtatgcagatattgttacaaccacaactcacaagtcacttcgtggccctcgtggggctatgatcttcttcaggaagggggtcaaaaatgtaaacaagcaagggcaagaagttatgtatgactatgaagacaaaattaatcaggctgtctttcctggactccaaggtggtccacacaatcacaccatatctgggttagcagttgcactcaagcaggccacaactccagagttcaaagcttaccaagagcaagttctcagtaactccgcaaaatttgcagagagcttgctagagaagggctatgatcttgtctctggtggaactgacaaccatttagtgttggtaaatttgagggacaagggaattgatggctcaagagttgaaaaggttctggaagctgctcatattgcagcaaataaaaatactgtcccaggggatgtttctgccatggtccctggtggtatacgtatgggaaccccggctctcacatctaggggttttatggaggatgattttgaaaaagtagcagagtattttgatgcagccgtgaagatagccttgaagattaaggctgctacaaaaggtaccaagttaaaggattttgtggcaactctggaatcagatggtcaaatacaatctgagattgcaaagctacgccacgagaatgaagagcgaacccctgtcattgttacagataaatttgttgaacaggcaacaagtgtgcttgcaaatgactccaatgcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00260 ko00460 ko00630 ko00670 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko01523 map00260 map00460 map00630 map00670 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map01523

Pfam Domains

Protein Families

SHMT

Protein Analysis

265

Amino Acids

28.67

Weight (kDa)

6.18

Isoelectric Point (pI)

32.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26780 AT5G26780 AT5G26780 AT5G26780
fragaria_vesca	FvH4_5g34000 FvH4_5g34000 FvH4_5g34000
malus_domestica	MD08G1206800.v1.1 MD15G1390500.v1.1
prunus_persica	Prupe.1G539400_v2.0.a1 Prupe.1G539400_v2.0.a1 Prupe.1G539400_v2.0.a1 Prupe.1G539400_v2.0.a1
pyrus_communis	pycom08g17860
rosa_chinensis	RchiOBHm_Chr5g0052761 RchiOBHm_Chr7g0233441 RchiOBHm_Chr7g0235741
rosa_laevigata	RLG00000001270 RLG00000013832 RLG00000035486
rosa_multiflora	Rmu_sc0000029.1_g000053 Rmu_sc0006510.1_g000006
rosa_roxburghii	Rroxscaffold_3G00227300 Rroxscaffold_3G00241170
rosa_rugosa	Rorug07G0280700
rosa_samantha	Rh1CG020600 Rh1CG022300 Rh2AG156000 Rh2BG162300 Rh2BG221600 Rh2DG161400 Rh4DG362000 Rh5BG352800 Rh5CG247000 Rh5CG419500 Rh5DG369100 Rh7AG154700 Rh7AG436500 Rh7AG488000 Rh7BG409600 Rh7CG456400 Rh7DG425700
rosa_wichuraiana	Rw0G022490 Rw7G035990 Rw7G036020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	20
Acc36I	ACCTGC	1 cut(s)	20
Acc65I	GGTACC	1 cut(s)	635
AccB1I	GGYRCC	1 cut(s)	635
AccI	GTMKAC	1 cut(s)	514
AciI	CCGC	2 cut(s)	26, 318
AcsI	RAATTY	3 cut(s)	323, 397, 749
AcuI	CTGAAG	1 cut(s)	106
AdeI	CACNNNGTG	1 cut(s)	95
AfaI	GTAC	1 cut(s)	637
AfiI	CCNNNNNNNGG	2 cut(s)	106, 243
AgsI	TTSAA	5 cut(s)	286, 434, 569, 613, 758
AjnI	CCWGG	3 cut(s)	205, 481, 505
AjuI	GAANNNNNNNTTGG	2 cut(s)	288, 320
AleI	CACNNNNGTG	1 cut(s)	12
AluBI	AGCT	4 cut(s)	290, 336, 449, 703
AluI	AGCT	4 cut(s)	290, 336, 449, 703
Alw26I	GTCTC	1 cut(s)	367
AoxI	GGCC	2 cut(s)	97, 267
ApeKI	GCWGC	4 cut(s)	449, 461, 593, 623
ApoI	RAATTY	3 cut(s)	323, 397, 749
AseI	ATTAAT	1 cut(s)	189
Asp700I	GAANNNNTTC	1 cut(s)	438
Asp718I	GGTACC	1 cut(s)	635
AspS9I	GGNCC	3 cut(s)	98, 221, 502
AsuC2I	CCSGG	1 cut(s)	530
AvaII	GGWCC	2 cut(s)	221, 502
BanI	GGYRCC	1 cut(s)	635
BauI	CACGAG	2 cut(s)	102, 710
BbsI	GAAGAC	1 cut(s)	186
BbvI	GCAGC	4 cut(s)	436, 473, 605, 610
BccI	CCATC	2 cut(s)	413, 668
BceAI	ACGGC	1 cut(s)	581
BciT130I	CCWGG	3 cut(s)	207, 483, 507
BcnI	CCSGG	1 cut(s)	530
BcoDI	GTCTC	1 cut(s)	367
BfaI	CTAG	2 cut(s)	341, 543
BfuAI	ACCTGC	1 cut(s)	20
BisI	GCNGC	5 cut(s)	27, 450, 462, 594, 624
BlsI	GCNGC	5 cut(s)	28, 451, 463, 595, 625
Bme1390I	CCNGG	4 cut(s)	207, 483, 507, 530
Bme18I	GGWCC	2 cut(s)	221, 502
BmgT120I	GGNCC	3 cut(s)	98, 221, 502
BmiI	GGNNCC	3 cut(s)	504, 526, 637
BmrFI	CCNGG	4 cut(s)	207, 483, 507, 530
BmsI	GCATC	1 cut(s)	580
BpiI	GAAGAC	1 cut(s)	186
BpmI	CTGGAG	1 cut(s)	261
BpuEI	CTTGAG	2 cut(s)	245, 409
BpuMI	CCSGG	1 cut(s)	530
BsaAI	YACGTR	1 cut(s)	518
BsaJI	CCNNGG	6 cut(s)	214, 481, 482, 498, 505, 528
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 243
BseBI	CCWGG	3 cut(s)	207, 483, 507
BseDI	CCNNGG	6 cut(s)	214, 481, 482, 498, 505, 528
BseGI	GGATG	2 cut(s)	493, 565
BseLI	CCNNNNNNNGG	2 cut(s)	106, 243
BseMII	CTCAG	2 cut(s)	322, 681
BseXI	GCAGC	4 cut(s)	436, 473, 605, 610
BshFI	GGCC	2 cut(s)	99, 269
BshNI	GGYRCC	1 cut(s)	635
BsiSI	CCGG	1 cut(s)	530
BslFI	GGGAC	3 cut(s)	419, 464, 488
BslI	CCNNNNNNNGG	2 cut(s)	106, 243
BsmAI	GTCTC	1 cut(s)	367
BsmFI	GGGAC	3 cut(s)	419, 464, 488
BsnI	GGCC	2 cut(s)	99, 269
Bsp143I	GATC	2 cut(s)	114, 355
Bsp19I	CCATGG	1 cut(s)	498
BspACI	CCGC	2 cut(s)	26, 318
BspANI	GGCC	2 cut(s)	99, 269
BspCNI	CTCAG	2 cut(s)	321, 682
BspLI	GGNNCC	3 cut(s)	504, 526, 637
BspMI	ACCTGC	1 cut(s)	20
BspQI	GCTCTTC	1 cut(s)	714
BspT107I	GGYRCC	1 cut(s)	635
BssECI	CCNNGG	6 cut(s)	214, 481, 482, 498, 505, 528
BssMI	GATC	2 cut(s)	114, 355
BssNAI	GTATAC	1 cut(s)	515
BssSI	CACGAG	2 cut(s)	102, 710
BssT1I	CCWWGG	2 cut(s)	214, 498
Bst1107I	GTATAC	1 cut(s)	515
Bst2BI	CACGAG	2 cut(s)	102, 710
Bst2UI	CCWGG	3 cut(s)	207, 483, 507
Bst4CI	ACNGT	1 cut(s)	478
Bst6I	CTCTTC	1 cut(s)	714
BstAPI	GCANNNNNTGC	1 cut(s)	326
BstBAI	YACGTR	1 cut(s)	518
BstC8I	GCNNGC	3 cut(s)	267, 338, 777
BstDEI	CTNAG	2 cut(s)	308, 690
BstDSI	CCRYGG	1 cut(s)	498
BstF5I	GGATG	2 cut(s)	493, 565
BstKTI	GATC	2 cut(s)	117, 358
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	2 cut(s)	114, 355
BstMWI	GCNNNNNNNGC	2 cut(s)	326, 458
BstNI	CCWGG	3 cut(s)	207, 483, 507
BstSCI	CCNGG	4 cut(s)	205, 481, 505, 528
BstSNI	TACGTA	1 cut(s)	518
BstV1I	GCAGC	4 cut(s)	436, 473, 605, 610
BstV2I	GAAGAC	1 cut(s)	186
BstZ17I	GTATAC	1 cut(s)	515
BsuRI	GGCC	2 cut(s)	99, 269
BtgI	CCRYGG	1 cut(s)	498
BtsCI	GGATG	2 cut(s)	493, 565
BtsIMutI	CAGTG	1 cut(s)	19
BveI	ACCTGC	1 cut(s)	20
Cac8I	GCNNGC	3 cut(s)	267, 338, 777
Cfr13I	GGNCC	3 cut(s)	98, 221, 502
Csp6I	GTAC	1 cut(s)	636
CviAII	CATG	1 cut(s)	499
CviQI	GTAC	1 cut(s)	636
DdeI	CTNAG	2 cut(s)	308, 690
DpnI	GATC	2 cut(s)	116, 357
DpnII	GATC	2 cut(s)	114, 355
DraIII	CACNNNGTG	1 cut(s)	95
Eam1104I	CTCTTC	1 cut(s)	714
EarI	CTCTTC	1 cut(s)	714
Eco105I	TACGTA	1 cut(s)	518
Eco130I	CCWWGG	2 cut(s)	214, 498
Eco47I	GGWCC	2 cut(s)	221, 502
Eco57I	CTGAAG	1 cut(s)	106
EcoRII	CCWGG	3 cut(s)	205, 481, 505
EcoT14I	CCWWGG	2 cut(s)	214, 498
ErhI	CCWWGG	2 cut(s)	214, 498
FaeI	CATG	1 cut(s)	502
FalI	AAGNNNNNCTT	2 cut(s)	593, 625
FaqI	GGGAC	3 cut(s)	419, 464, 488
FatI	CATG	1 cut(s)	498
FblI	GTMKAC	1 cut(s)	514
Fnu4HI	GCNGC	5 cut(s)	27, 450, 462, 594, 624
FokI	GGATG	2 cut(s)	500, 572
Fsp4HI	GCNGC	5 cut(s)	27, 450, 462, 594, 624
FspBI	CTAG	2 cut(s)	341, 543
GluI	GCNGC	5 cut(s)	27, 450, 462, 594, 624
GsuI	CTGGAG	1 cut(s)	261
HaeIII	GGCC	2 cut(s)	99, 269
HapII	CCGG	1 cut(s)	530
Hin1II	CATG	1 cut(s)	502
HindIII	AAGCTT	1 cut(s)	288
HinfI	GANTC	3 cut(s)	210, 668, 785
HpaII	CCGG	1 cut(s)	530
Hpy166II	GTNNAC	3 cut(s)	145, 224, 515
Hpy188I	TCNGA	2 cut(s)	673, 691
Hpy188III	TCNNGA	5 cut(s)	124, 278, 426, 443, 665
Hpy8I	GTNNAC	3 cut(s)	145, 224, 515
HpyAV	CCTTC	2 cut(s)	121, 340
HpyCH4III	ACNGT	1 cut(s)	478
HpyCH4IV	ACGT	1 cut(s)	517
HpyCH4V	TGCA	7 cut(s)	59, 257, 329, 461, 593, 698, 779
HpyF10VI	GCNNNNNNNGC	2 cut(s)	326, 458
HpyF3I	CTNAG	2 cut(s)	308, 690
HpySE526I	ACGT	1 cut(s)	517
Hsp92II	CATG	1 cut(s)	502
KpnI	GGTACC	1 cut(s)	639
Kzo9I	GATC	2 cut(s)	114, 355
LguI	GCTCTTC	1 cut(s)	714
Lsp1109I	GCAGC	4 cut(s)	436, 473, 605, 610
LweI	GCATC	1 cut(s)	580
MaeI	CTAG	2 cut(s)	341, 543
MaeII	ACGT	1 cut(s)	517
MaeIII	GTNAC	4 cut(s)	67, 87, 311, 739
MalI	GATC	2 cut(s)	116, 357
MboI	GATC	2 cut(s)	114, 355
MboII	GAAGA	6 cut(s)	109, 112, 191, 613, 625, 731
MluCI	AATT	5 cut(s)	186, 323, 397, 414, 749
MlyI	GAGTC	2 cut(s)	204, 779
MnlI	CCTC	3 cut(s)	111, 396, 550
MroXI	GAANNNNTTC	1 cut(s)	438
MseI	TTAA	3 cut(s)	189, 618, 644
MslI	CAYNNNNRTG	2 cut(s)	12, 714
MspI	CCGG	1 cut(s)	530
MspR9I	CCNGG	4 cut(s)	207, 483, 507, 530
MvaI	CCWGG	3 cut(s)	207, 483, 507
MwoI	GCNNNNNNNGC	2 cut(s)	326, 458
NciI	CCSGG	1 cut(s)	530
NcoI	CCATGG	1 cut(s)	498
NdeII	GATC	2 cut(s)	114, 355
NlaIII	CATG	1 cut(s)	502
NlaIV	GGNNCC	3 cut(s)	504, 526, 637
NmuCI	GTSAC	1 cut(s)	87
OliI	CACNNNNGTG	1 cut(s)	12
PaqCI	CACCTGC	1 cut(s)	20
PasI	CCCWGGG	1 cut(s)	482
PciSI	GCTCTTC	1 cut(s)	714
PcsI	WCGNNNNNNNCGW	1 cut(s)	100
PdmI	GAANNNNTTC	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	668
PfoI	TCCNGGA	1 cut(s)	205
PkrI	GCNGC	5 cut(s)	28, 451, 463, 595, 625
PleI	GAGTC	2 cut(s)	204, 779
PpsI	GAGTC	2 cut(s)	204, 779
Ppu21I	YACGTR	1 cut(s)	518
PshBI	ATTAAT	1 cut(s)	189
Psp6I	CCWGG	3 cut(s)	205, 481, 505
PspGI	CCWGG	3 cut(s)	205, 481, 505
PspN4I	GGNNCC	3 cut(s)	504, 526, 637
PspPI	GGNCC	3 cut(s)	98, 221, 502
RsaI	GTAC	1 cut(s)	637
RsaNI	GTAC	1 cut(s)	636
RseI	CAYNNNNRTG	2 cut(s)	12, 714
SapI	GCTCTTC	1 cut(s)	714
SaqAI	TTAA	3 cut(s)	189, 618, 644
SatI	GCNGC	5 cut(s)	27, 450, 462, 594, 624
Sau3AI	GATC	2 cut(s)	114, 355
Sau96I	GGNCC	3 cut(s)	98, 221, 502
SchI	GAGTC	2 cut(s)	204, 779
ScrFI	CCNGG	4 cut(s)	207, 483, 507, 530
SetI	ASST	9 cut(s)	34, 220, 292, 338, 441, 451, 520, 637, 705
SfaNI	GCATC	1 cut(s)	580
SinI	GGWCC	2 cut(s)	221, 502
SmiMI	CAYNNNNRTG	2 cut(s)	12, 714
SmlI	CTYRAG	2 cut(s)	260, 424
SmoI	CTYRAG	2 cut(s)	260, 424
SnaBI	TACGTA	1 cut(s)	518
Sse9I	AATT	5 cut(s)	186, 323, 397, 414, 749
SsiI	CCGC	2 cut(s)	26, 318
SspMI	CTAG	2 cut(s)	341, 543
StyD4I	CCNGG	4 cut(s)	205, 481, 505, 528
StyI	CCWWGG	2 cut(s)	214, 498
TaaI	ACNGT	1 cut(s)	478
TaiI	ACGT	1 cut(s)	520
TasI	AATT	5 cut(s)	186, 323, 397, 414, 749
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	668
Tru1I	TTAA	3 cut(s)	189, 618, 644
Tru9I	TTAA	3 cut(s)	189, 618, 644
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	1 cut(s)	87
TseI	GCWGC	4 cut(s)	449, 461, 593, 623
Tsp45I	GTSAC	1 cut(s)	87
TspDTI	ATGAA	3 cut(s)	30, 192, 732
TspRI	CASTG	1 cut(s)	19
VpaK11BI	GGWCC	2 cut(s)	221, 502
VspI	ATTAAT	1 cut(s)	189
XapI	RAATTY	3 cut(s)	323, 397, 749
XmiI	GTMKAC	1 cut(s)	514
XmnI	GAANNNNTTC	1 cut(s)	438
XspI	CTAG	2 cut(s)	341, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.