Rh2BG162300

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001957
Physical Location & Seq
Reverse (-)
14113105 .. 14130811
17707 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG162300.1

Sequence Viewer

Length: 1302 bp
ATGCTCATCGTGGACCTATTCGGCACCGAATCTTTGCCCATTGCCGAGGAGTTTGGGATTCCAAAGTATGTGTACATTGCTTCCGATGCATGGTTCCTTTCTGTAATGATTTATTCTCCAACACTAGATGAGCAAGTTAAGGCTAAATATGTTGACCTCGAAGATCCACTAGAAATTCCTGGATACCCAGAACTTGATATCGTTGACGCTTTGCTGGACCGGAGTAATCAGCAGTACGATGAGCACATGCTGATGGGAAGAGGAATCCCAAAGGGTGATGGAATTTTGATAAACATATGGGAGGAACTAGAGCCCAAGTCCCTAGCAGCACTAAGAGATGAGAAATTCTTGGGCCGATTTGCGAATGTGCTTGTCTTTCCAATTGGGCCGTTGATGAGGCCCAATGTGTCTTCTAGCTTGAGGGGTGATGTGTTTGATTGGCTAGATGAGCTGCCCAATGAATTTGTGATTTACATGTCCTTTGGAAACGGTGGGGCCCTGTCATCTGAACAAATGGTCGAGCTAGCTTGGGGTTTAGAGATGAGTCAACAGAGGTTCGTTTGGGTCATTCGGCCGCCTATCATATCATCTGTTGTTGAAACACTTTTCACAGCAGGGAGTTACAATGGCAAAGACGACAATCTAACTAAATACTTGCCCAAGGGGTTTTTGGGCCAAACCAAGGACATTGGGTTTATCATCCCTTTGTGGGCTCCACAAGTGGATATCTTGGCCCATCCATTGTTGGAGAAAAGTGCCACACTATTCAGACCCAAATTAATAGTTGCTGGTGCCAATGCTTGTGCATGTTTGTACGACTATGCACACATACGCAAGGTCTGTGATAAGCAGAAAGCTATTTTGTTAGCTGATATGGCACACATCAGTGGATTGGTTGCGGCAGGTGTTATTCCATCTCCTTTTGAGTATGCAGATATTGTTACAACCACAACTCACAAGTCACTTCGTAGCCCTCGTGGGGCTATGATCTTCTTCAGGAAGGGGGTCAAAAATGTAAACAAGCAAGGACAAGAAGCTGTCTTTCCTGGACTCCAAGGTGGTCCACACAATCACACCATAGCTGGGTTAGCAGTTGCACTCAAGCAGGCCACAACTCCAGAGTTCAAAGCTTACCAAGAGCAAGTTCTCAGTAATTCCGCAAAATTTGTAGAGAGCTTGCTAGAGAAGGGCTATGATCTTGTCTCTGGTGGAACTGACAACCATTTAGTATTGGTAAATTTGAGGGACAAGTGGGCTGAAGACTATTTTAACCAAAAGAGATTGGGTTGTGTGGGGGCTTAA

Protein Analysis

433

Amino Acids

48.0

Weight (kDa)

5.24

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SHMT PF00464 247 - 418 4.2e-80 Serine hydroxymethyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 893
Acc36I ACCTGC 1 cut(s) 893
AccB1I GGYRCC 2 cut(s) 23, 791
AciI CCGC 3 cut(s) 575, 899, 1158
AclWI GGATC 1 cut(s) 158
AcoI YGGCCR 1 cut(s) 572
AcsI RAATTY 6 cut(s) 174, 282, 344, 461, 1163, 1237
AcuI CTGAAG 2 cut(s) 979, 1278
AfaI GTAC 3 cut(s) 74, 236, 815
AfiI CCNNNNNNNGG 5 cut(s) 90, 682, 709, 979, 1083
AflIII ACRYGT 1 cut(s) 474
AgsI TTSAA 2 cut(s) 599, 1126
AjnI CCWGG 2 cut(s) 178, 1045
AjuI GAANNNNNNNTTGG 2 cut(s) 1128, 1160
AleI CACNNNNGTG 1 cut(s) 885
Alw21I GWGCWC 1 cut(s) 246
Alw26I GTCTC 1 cut(s) 1207
AlwI GGATC 1 cut(s) 158
AoxI GGCC 8 cut(s) 352, 386, 398, 495, 572, 673, 732, 1107
ApaI GGGCCC 1 cut(s) 499
ApeKI GCWGC 2 cut(s) 326, 451
ApoI RAATTY 6 cut(s) 174, 282, 344, 461, 1163, 1237
AseI ATTAAT 1 cut(s) 779
AsuHPI GGTGA 2 cut(s) 287, 437
AsuNHI GCTAGC 1 cut(s) 523
AvaII GGWCC 3 cut(s) 13, 217, 1061
BaeGI GKGCMC 1 cut(s) 499
BanI GGYRCC 2 cut(s) 23, 791
BanII GRGCYC 3 cut(s) 315, 499, 715
BauI CACGAG 1 cut(s) 975
BbsI GAAGAC 2 cut(s) 402, 1266
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 2 cut(s) 338, 438
BccI CCATC 4 cut(s) 247, 272, 744, 922
BceAI ACGGC 1 cut(s) 373
BciT130I CCWGG 2 cut(s) 180, 1047
BciVI GTATCC 1 cut(s) 176
BcoDI GTCTC 1 cut(s) 1207
BfaI CTAG 8 cut(s) 125, 170, 308, 323, 414, 443, 524, 1181
BfuAI ACCTGC 1 cut(s) 893
BfuI GTATCC 1 cut(s) 176
BisI GCNGC 4 cut(s) 327, 452, 575, 900
BlsI GCNGC 4 cut(s) 328, 453, 576, 901
Bme1390I CCNGG 2 cut(s) 180, 1047
Bme18I GGWCC 3 cut(s) 13, 217, 1061
BmiI GGNNCC 6 cut(s) 25, 95, 496, 497, 714, 793
BmrFI CCNGG 2 cut(s) 180, 1047
BmsI GCATC 1 cut(s) 76
BmtI GCTAGC 1 cut(s) 527
BpiI GAAGAC 2 cut(s) 402, 1266
BpmI CTGGAG 1 cut(s) 1101
BpuEI CTTGAG 2 cut(s) 439, 1085
BsaJI CCNNGG 4 cut(s) 45, 660, 681, 1054
BsaWI WCCGGW 1 cut(s) 219
Bsc4I CCNNNNNNNGG 5 cut(s) 90, 682, 709, 979, 1083
Bse3DI GCAATG 2 cut(s) 39, 75
BseBI CCWGG 2 cut(s) 180, 1047
BseDI CCNNGG 4 cut(s) 45, 660, 681, 1054
BseGI GGATG 2 cut(s) 699, 736
BseLI CCNNNNNNNGG 5 cut(s) 90, 682, 709, 979, 1083
BseMI GCAATG 2 cut(s) 39, 75
BseMII CTCAG 1 cut(s) 1162
BseRI GAGGAG 1 cut(s) 62
BseSI GKGCMC 1 cut(s) 499
BseX3I CGGCCG 1 cut(s) 572
BseXI GCAGC 2 cut(s) 338, 438
BseYI CCCAGC 1 cut(s) 1082
Bsh1285I CGRYCG 1 cut(s) 575
BshFI GGCC 8 cut(s) 354, 388, 400, 497, 574, 675, 734, 1109
BshNI GGYRCC 2 cut(s) 23, 791
BsiEI CGRYCG 1 cut(s) 575
BsiHKAI GWGCWC 1 cut(s) 246
BsiSI CCGG 1 cut(s) 220
BslFI GGGAC 2 cut(s) 304, 1259
BslI CCNNNNNNNGG 5 cut(s) 90, 682, 709, 979, 1083
BsmAI GTCTC 1 cut(s) 1207
BsmFI GGGAC 2 cut(s) 304, 1259
BsnI GGCC 8 cut(s) 354, 388, 400, 497, 574, 675, 734, 1109
Bsp120I GGGCCC 1 cut(s) 495
Bsp1286I GDGCHC 4 cut(s) 246, 315, 499, 715
Bsp1407I TGTACA 1 cut(s) 72
Bsp143I GATC 3 cut(s) 163, 987, 1195
BspACI CCGC 3 cut(s) 575, 899, 1158
BspANI GGCC 8 cut(s) 354, 388, 400, 497, 574, 675, 734, 1109
BspCNI CTCAG 1 cut(s) 1161
BspLI GGNNCC 6 cut(s) 25, 95, 496, 497, 714, 793
BspMI ACCTGC 1 cut(s) 893
BspOI GCTAGC 1 cut(s) 527
BspPI GGATC 1 cut(s) 158
BspT107I GGYRCC 2 cut(s) 23, 791
BsrDI GCAATG 2 cut(s) 39, 75
BsrGI TGTACA 1 cut(s) 72
BssECI CCNNGG 4 cut(s) 45, 660, 681, 1054
BssMI GATC 3 cut(s) 163, 987, 1195
BssSI CACGAG 1 cut(s) 975
BssT1I CCWWGG 3 cut(s) 660, 681, 1054
Bst2BI CACGAG 1 cut(s) 975
Bst2UI CCWGG 2 cut(s) 180, 1047
Bst4CI ACNGT 1 cut(s) 491
Bst6I CTCTTC 1 cut(s) 253
BstAUI TGTACA 1 cut(s) 72
BstC8I GCNNGC 3 cut(s) 525, 1107, 1178
BstDEI CTNAG 2 cut(s) 332, 1148
BstF5I GGATG 2 cut(s) 699, 736
BstKTI GATC 3 cut(s) 166, 990, 1198
BstMAI GTCTC 1 cut(s) 1207
BstMBI GATC 3 cut(s) 163, 987, 1195
BstMCI CGRYCG 1 cut(s) 575
BstMWI GCNNNNNNNGC 4 cut(s) 86, 448, 875, 1088
BstNI CCWGG 2 cut(s) 180, 1047
BstNSI RCATGY 3 cut(s) 250, 478, 810
BstSCI CCNGG 2 cut(s) 178, 1045
BstSLI GKGCMC 1 cut(s) 499
BstV1I GCAGC 2 cut(s) 338, 438
BstV2I GAAGAC 2 cut(s) 402, 1266
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
BstZI CGGCCG 1 cut(s) 572
BsuI GTATCC 1 cut(s) 176
BsuRI GGCC 8 cut(s) 354, 388, 400, 497, 574, 675, 734, 1109
BtsCI GGATG 2 cut(s) 699, 736
BtsIMutI CAGTG 1 cut(s) 892
BveI ACCTGC 1 cut(s) 893
Cac8I GCNNGC 3 cut(s) 525, 1107, 1178
CseI GACGC 1 cut(s) 215
Csp6I GTAC 3 cut(s) 73, 235, 814
CviAII CATG 4 cut(s) 90, 247, 475, 807
CviQI GTAC 3 cut(s) 73, 235, 814
DdeI CTNAG 2 cut(s) 332, 1148
DpnI GATC 3 cut(s) 165, 989, 1197
DpnII GATC 3 cut(s) 163, 987, 1195
EaeI YGGCCR 1 cut(s) 572
EagI CGGCCG 1 cut(s) 572
Eam1104I CTCTTC 1 cut(s) 253
EarI CTCTTC 1 cut(s) 253
EclXI CGGCCG 1 cut(s) 572
Eco130I CCWWGG 3 cut(s) 660, 681, 1054
Eco24I GRGCYC 3 cut(s) 315, 499, 715
Eco32I GATATC 2 cut(s) 199, 727
Eco47I GGWCC 3 cut(s) 13, 217, 1061
Eco52I CGGCCG 1 cut(s) 572
Eco57I CTGAAG 2 cut(s) 979, 1278
EcoO109I RGGNCCY 2 cut(s) 495, 496
EcoRII CCWGG 2 cut(s) 178, 1045
EcoRV GATATC 2 cut(s) 199, 727
EcoT14I CCWWGG 3 cut(s) 660, 681, 1054
EcoT22I ATGCAT 1 cut(s) 91
EcoT38I GRGCYC 3 cut(s) 315, 499, 715
ErhI CCWWGG 3 cut(s) 660, 681, 1054
FaeI CATG 4 cut(s) 93, 250, 478, 810
FaqI GGGAC 2 cut(s) 304, 1259
FatI CATG 4 cut(s) 89, 246, 474, 806
FauNDI CATATG 1 cut(s) 296
Fnu4HI GCNGC 4 cut(s) 327, 452, 575, 900
FokI GGATG 2 cut(s) 686, 723
FriOI GRGCYC 3 cut(s) 315, 499, 715
Fsp4HI GCNGC 4 cut(s) 327, 452, 575, 900
FspBI CTAG 8 cut(s) 125, 170, 308, 323, 414, 443, 524, 1181
GluI GCNGC 4 cut(s) 327, 452, 575, 900
GsaI CCCAGC 1 cut(s) 1086
GsuI CTGGAG 1 cut(s) 1101
HaeIII GGCC 8 cut(s) 354, 388, 400, 497, 574, 675, 734, 1109
HapII CCGG 1 cut(s) 220
HgaI GACGC 1 cut(s) 215
Hin1II CATG 4 cut(s) 93, 250, 478, 810
HincII GTYRAC 3 cut(s) 154, 205, 548
HindII GTYRAC 3 cut(s) 154, 205, 548
HindIII AAGCTT 1 cut(s) 1128
HinfI GANTC 5 cut(s) 29, 58, 264, 544, 1050
HpaII CCGG 1 cut(s) 220
HphI GGTGA 2 cut(s) 287, 437
Hpy166II GTNNAC 7 cut(s) 13, 73, 154, 205, 548, 1018, 1064
Hpy188I TCNGA 3 cut(s) 85, 508, 770
Hpy188III TCNNGA 2 cut(s) 997, 1118
Hpy8I GTNNAC 7 cut(s) 13, 73, 154, 205, 548, 1018, 1064
HpyAV CCTTC 2 cut(s) 994, 1180
HpyCH4III ACNGT 1 cut(s) 491
HpyCH4V TGCA 5 cut(s) 89, 806, 824, 932, 1097
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 448, 875, 1088
HpyF3I CTNAG 2 cut(s) 332, 1148
Hsp92II CATG 4 cut(s) 93, 250, 478, 810
Kzo9I GATC 3 cut(s) 163, 987, 1195
LmnI GCTCC 1 cut(s) 718
Lsp1109I GCAGC 2 cut(s) 338, 438
LweI GCATC 1 cut(s) 76
MaeI CTAG 8 cut(s) 125, 170, 308, 323, 414, 443, 524, 1181
MaeIII GTNAC 3 cut(s) 620, 940, 960
MalI GATC 3 cut(s) 165, 989, 1197
MboI GATC 3 cut(s) 163, 987, 1195
MboII GAAGA 6 cut(s) 173, 270, 402, 982, 985, 1271
MfeI CAATTG 1 cut(s) 381
MflI RGATCY 1 cut(s) 163
MhlI GDGCHC 4 cut(s) 246, 315, 499, 715
MluCI AATT 9 cut(s) 174, 282, 344, 381, 461, 776, 1153, 1163, 1237
MlyI GAGTC 2 cut(s) 553, 1044
MmeI TCCRAC 2 cut(s) 143, 726
MnlI CCTC 9 cut(s) 40, 167, 254, 295, 390, 414, 546, 984, 1236
Mph1103I ATGCAT 1 cut(s) 91
MseI TTAA 4 cut(s) 138, 779, 1269, 1300
MslI CAYNNNNRTG 2 cut(s) 251, 885
MspI CCGG 1 cut(s) 220
MspR9I CCNGG 2 cut(s) 180, 1047
MunI CAATTG 1 cut(s) 381
MvaI CCWGG 2 cut(s) 180, 1047
MwoI GCNNNNNNNGC 4 cut(s) 86, 448, 875, 1088
NdeI CATATG 1 cut(s) 296
NdeII GATC 3 cut(s) 163, 987, 1195
NheI GCTAGC 1 cut(s) 523
NlaIII CATG 4 cut(s) 93, 250, 478, 810
NlaIV GGNNCC 6 cut(s) 25, 95, 496, 497, 714, 793
NmeAIII GCCGAG 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 960
NsiI ATGCAT 1 cut(s) 91
NspI RCATGY 3 cut(s) 250, 478, 810
OliI CACNNNNGTG 1 cut(s) 885
PaqCI CACCTGC 1 cut(s) 893
PciI ACATGT 1 cut(s) 474
PcsI WCGNNNNNNNCGW 1 cut(s) 973
PfeI GAWTC 3 cut(s) 29, 58, 264
PfoI TCCNGGA 2 cut(s) 178, 1045
PkrI GCNGC 4 cut(s) 328, 453, 576, 901
PleI GAGTC 2 cut(s) 552, 1044
PpsI GAGTC 2 cut(s) 552, 1044
PscI ACATGT 1 cut(s) 474
PshBI ATTAAT 1 cut(s) 779
Psp6I CCWGG 2 cut(s) 178, 1045
PspFI CCCAGC 1 cut(s) 1082
PspGI CCWGG 2 cut(s) 178, 1045
PspN4I GGNNCC 6 cut(s) 25, 95, 496, 497, 714, 793
PspOMI GGGCCC 1 cut(s) 495
PsuI RGATCY 1 cut(s) 163
RsaI GTAC 3 cut(s) 74, 236, 815
RsaNI GTAC 3 cut(s) 73, 235, 814
RseI CAYNNNNRTG 2 cut(s) 251, 885
SaqAI TTAA 4 cut(s) 138, 779, 1269, 1300
SatI GCNGC 4 cut(s) 327, 452, 575, 900
Sau3AI GATC 3 cut(s) 163, 987, 1195
SchI GAGTC 2 cut(s) 553, 1044
ScrFI CCNGG 2 cut(s) 180, 1047
SduI GDGCHC 4 cut(s) 246, 315, 499, 715
SfaNI GCATC 1 cut(s) 76
SinI GGWCC 3 cut(s) 13, 217, 1061
SmiMI CAYNNNNRTG 2 cut(s) 251, 885
SmlI CTYRAG 2 cut(s) 418, 1100
SmoI CTYRAG 2 cut(s) 418, 1100
Sse9I AATT 9 cut(s) 174, 282, 344, 381, 461, 776, 1153, 1163, 1237
SsiI CCGC 3 cut(s) 575, 899, 1158
SspMI CTAG 8 cut(s) 125, 170, 308, 323, 414, 443, 524, 1181
StyD4I CCNGG 2 cut(s) 178, 1045
StyI CCWWGG 3 cut(s) 660, 681, 1054
TaaI ACNGT 1 cut(s) 491
TaqI TCGA 2 cut(s) 159, 519
TasI AATT 9 cut(s) 174, 282, 344, 381, 461, 776, 1153, 1163, 1237
TatI WGTACW 1 cut(s) 72
TauI GCSGC 2 cut(s) 577, 902
TfiI GAWTC 3 cut(s) 29, 58, 264
Tru1I TTAA 4 cut(s) 138, 779, 1269, 1300
Tru9I TTAA 4 cut(s) 138, 779, 1269, 1300
TscAI CASTG 1 cut(s) 892
TseFI GTSAC 1 cut(s) 960
TseI GCWGC 2 cut(s) 326, 451
Tsp45I GTSAC 1 cut(s) 960
TspDTI ATGAA 1 cut(s) 474
TspRI CASTG 1 cut(s) 892
VpaK11BI GGWCC 3 cut(s) 13, 217, 1061
VspI ATTAAT 1 cut(s) 779
XapI RAATTY 6 cut(s) 174, 282, 344, 461, 1163, 1237
XceI RCATGY 3 cut(s) 250, 478, 810
XcmI CCANNNNNNNNNTGG 1 cut(s) 667
XspI CTAG 8 cut(s) 125, 170, 308, 323, 414, 443, 524, 1181
Zsp2I ATGCAT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.