Rh1CG022300

Interconversion of serine and glycine

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001957
Physical Location & Seq
Forward (+)
3950856 .. 3952873
2018 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG022300.1

Sequence Viewer

Length: 471 bp
ATGATCTCTAACGAGAGTTACCAGACAGGCATCTCGAACTGTCGCAAGCGACCTTCGCCTCCTTTCGCTGCCGCAAGGACCGCGTGCTCCGCCTCAACCTCCACCTCTTGGAGGACTGAATCGCCACCACCGTGGACGGTTATGATGTTGAAGAAAAGCACCACACTATTTAGACCAAGATTAATAGTTGCTGGTGCCAATGCTTGTGCACGCTTGTACTACTATGCACGCATACGCAAGGTAAGTGATAAGCAGAAAGCTGTTTTGTTAGCTGATATGGCACACATCAGTGGATTGGTTGCGGCAGGTGTTATTCCATCTCCTTTTGAGTATGTAGATATTGTTACAACCACAACTCATAAGTCACTTCGTGGCCCTCGTGGGGCTATGATCTTCTTCAGGAAGGGGGTCATAGCCCCACGAGGCCACAACTCCAGAGTTCAAAGTTTACCCAGAGCAAGTTCTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001505 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004372 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005840 GO:0005886 GO:0006082 GO:0006520 GO:0006544 GO:0006563 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007623 GO:0008150 GO:0008152 GO:0008187 GO:0008219 GO:0008266 GO:0009069 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009626 GO:0009628 GO:0009853 GO:0009987 GO:0010035 GO:0010038 GO:0010319 GO:0012501 GO:0016020 GO:0016740 GO:0016741 GO:0016742 GO:0017144 GO:0019752 GO:0022626 GO:0031967 GO:0031974 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033554 GO:0034050 GO:0042133 GO:0042221 GO:0043094 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045087 GO:0046686 GO:0048046 GO:0048511 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901605 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko00260 ko00460 ko00630 ko00670 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko01523 map00260 map00460 map00630 map00670 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map01523
Pfam Domains
Protein Families
SHMT

Protein Analysis

156

Amino Acids

17.1

Weight (kDa)

10.97

Isoelectric Point (pI)

49.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SHMT PF00464 50 - 138 1e-40 Serine hydroxymethyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 296
Acc36I ACCTGC 1 cut(s) 296
AccB1I GGYRCC 1 cut(s) 194
AccB7I CCANNNNNTGG 1 cut(s) 108
AccII CGCG 1 cut(s) 83
AciI CCGC 4 cut(s) 72, 81, 90, 302
AcuI CTGAAG 1 cut(s) 382
AdeI CACNNNGTG 1 cut(s) 371
AfaI GTAC 1 cut(s) 218
AfiI CCNNNNNNNGG 3 cut(s) 108, 111, 382
AgsI TTSAA 2 cut(s) 151, 443
AleI CACNNNNGTG 2 cut(s) 130, 288
AluBI AGCT 2 cut(s) 260, 272
AluI AGCT 2 cut(s) 260, 272
Alw21I GWGCWC 2 cut(s) 89, 211
Alw44I GTGCAC 1 cut(s) 207
AoxI GGCC 2 cut(s) 373, 424
ApaLI GTGCAC 1 cut(s) 207
ApeKI GCWGC 1 cut(s) 68
AseI ATTAAT 1 cut(s) 182
AspS9I GGNCC 2 cut(s) 78, 374
AvaII GGWCC 1 cut(s) 78
BaeGI GKGCMC 1 cut(s) 211
BanI GGYRCC 1 cut(s) 194
BauI CACGAG 2 cut(s) 378, 420
Bbv12I GWGCWC 2 cut(s) 89, 211
BbvI GCAGC 1 cut(s) 55
BccI CCATC 1 cut(s) 325
BfuAI ACCTGC 1 cut(s) 296
BisI GCNGC 3 cut(s) 69, 72, 303
BlsI GCNGC 3 cut(s) 70, 73, 304
Bme18I GGWCC 1 cut(s) 78
BmgT120I GGNCC 2 cut(s) 78, 374
BmiI GGNNCC 1 cut(s) 196
BmsI GCATC 1 cut(s) 39
BpmI CTGGAG 1 cut(s) 418
BsaJI CCNNGG 1 cut(s) 131
Bsc4I CCNNNNNNNGG 3 cut(s) 108, 111, 382
BseDI CCNNGG 1 cut(s) 131
BseLI CCNNNNNNNGG 3 cut(s) 108, 111, 382
BseSI GKGCMC 1 cut(s) 211
BseXI GCAGC 1 cut(s) 55
Bsh1236I CGCG 1 cut(s) 83
BshFI GGCC 2 cut(s) 375, 426
BshNI GGYRCC 1 cut(s) 194
BsiHKAI GWGCWC 2 cut(s) 89, 211
BslI CCNNNNNNNGG 3 cut(s) 108, 111, 382
BsnI GGCC 2 cut(s) 375, 426
Bsp1286I GDGCHC 2 cut(s) 89, 211
Bsp143I GATC 2 cut(s) 3, 390
BspACI CCGC 4 cut(s) 72, 81, 90, 302
BspANI GGCC 2 cut(s) 375, 426
BspFNI CGCG 1 cut(s) 83
BspLI GGNNCC 1 cut(s) 196
BspMI ACCTGC 1 cut(s) 296
BspT107I GGYRCC 1 cut(s) 194
BssECI CCNNGG 1 cut(s) 131
BssMI GATC 2 cut(s) 3, 390
BssSI CACGAG 2 cut(s) 378, 420
Bst2BI CACGAG 2 cut(s) 378, 420
Bst4CI ACNGT 3 cut(s) 41, 132, 139
BstC8I GCNNGC 4 cut(s) 47, 85, 211, 229
BstDEI CTNAG 1 cut(s) 465
BstDSI CCRYGG 1 cut(s) 131
BstENI CCTNNNNNAGG 1 cut(s) 109
BstFNI CGCG 1 cut(s) 83
BstKTI GATC 2 cut(s) 6, 393
BstMBI GATC 2 cut(s) 3, 390
BstMWI GCNNNNNNNGC 4 cut(s) 55, 80, 89, 278
BstSLI GKGCMC 1 cut(s) 211
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 1 cut(s) 55
BstXI CCANNNNNNTGG 1 cut(s) 132
BsuRI GGCC 2 cut(s) 375, 426
BtgI CCRYGG 1 cut(s) 131
BtsIMutI CAGTG 1 cut(s) 295
BveI ACCTGC 1 cut(s) 296
Cac8I GCNNGC 4 cut(s) 47, 85, 211, 229
Cfr13I GGNCC 2 cut(s) 78, 374
Csp6I GTAC 1 cut(s) 217
CviJI RGCY 6 cut(s) 260, 272, 375, 386, 416, 426
CviKI_1 RGCY 6 cut(s) 260, 272, 375, 386, 416, 426
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 1 cut(s) 465
DpnI GATC 2 cut(s) 5, 392
DpnII GATC 2 cut(s) 3, 390
DraIII CACNNNGTG 1 cut(s) 371
EciI GGCGGA 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 78
Eco57I CTGAAG 1 cut(s) 382
EcoNI CCTNNNNNAGG 1 cut(s) 109
FaiI YATR 8 cut(s) 143, 225, 233, 278, 333, 360, 389, 413
Fnu4HI GCNGC 3 cut(s) 69, 72, 303
Fsp4HI GCNGC 3 cut(s) 69, 72, 303
GluI GCNGC 3 cut(s) 69, 72, 303
GsuI CTGGAG 1 cut(s) 418
HaeIII GGCC 2 cut(s) 375, 426
HinfI GANTC 1 cut(s) 119
Hpy166II GTNNAC 3 cut(s) 135, 209, 449
Hpy188III TCNNGA 3 cut(s) 34, 400, 435
Hpy8I GTNNAC 3 cut(s) 135, 209, 449
HpyAV CCTTC 2 cut(s) 63, 397
HpyCH4III ACNGT 3 cut(s) 41, 132, 139
HpyCH4V TGCA 2 cut(s) 209, 227
HpyF10VI GCNNNNNNNGC 4 cut(s) 55, 80, 89, 278
HpyF3I CTNAG 1 cut(s) 465
Kzo9I GATC 2 cut(s) 3, 390
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 7 cut(s) 12, 35, 177, 291, 385, 448, 466
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 1 cut(s) 39
MaeIII GTNAC 3 cut(s) 17, 343, 363
MalI GATC 2 cut(s) 5, 392
MboI GATC 2 cut(s) 3, 390
MboII GAAGA 3 cut(s) 163, 385, 388
MhlI GDGCHC 2 cut(s) 89, 211
MnlI CCTC 7 cut(s) 69, 103, 105, 109, 115, 387, 416
MseI TTAA 1 cut(s) 182
MslI CAYNNNNRTG 2 cut(s) 130, 288
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 4 cut(s) 55, 80, 89, 278
NdeII GATC 2 cut(s) 3, 390
NlaIV GGNNCC 1 cut(s) 196
NmuCI GTSAC 1 cut(s) 363
OliI CACNNNNGTG 2 cut(s) 130, 288
PaqCI CACCTGC 1 cut(s) 296
PcsI WCGNNNNNNNCGW 2 cut(s) 128, 376
PfeI GAWTC 1 cut(s) 119
PflMI CCANNNNNTGG 1 cut(s) 108
PkrI GCNGC 3 cut(s) 70, 73, 304
PshBI ATTAAT 1 cut(s) 182
PspN4I GGNNCC 1 cut(s) 196
PspPI GGNCC 2 cut(s) 78, 374
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
RseI CAYNNNNRTG 2 cut(s) 130, 288
SaqAI TTAA 1 cut(s) 182
SatI GCNGC 3 cut(s) 69, 72, 303
Sau3AI GATC 2 cut(s) 3, 390
Sau96I GGNCC 2 cut(s) 78, 374
SduI GDGCHC 2 cut(s) 89, 211
SetI ASST 7 cut(s) 55, 101, 107, 243, 262, 274, 310
SfaNI GCATC 1 cut(s) 39
SinI GGWCC 1 cut(s) 78
SmiMI CAYNNNNRTG 2 cut(s) 130, 288
SsiI CCGC 4 cut(s) 72, 81, 90, 302
TaaI ACNGT 3 cut(s) 41, 132, 139
TaqI TCGA 1 cut(s) 35
TatI WGTACW 1 cut(s) 216
TauI GCSGC 2 cut(s) 74, 305
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 1 cut(s) 182
Tru9I TTAA 1 cut(s) 182
TscAI CASTG 1 cut(s) 295
TseFI GTSAC 1 cut(s) 363
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 363
TspRI CASTG 1 cut(s) 295
Van91I CCANNNNNTGG 1 cut(s) 108
VneI GTGCAC 1 cut(s) 207
VpaK11BI GGWCC 1 cut(s) 78
VspI ATTAAT 1 cut(s) 182
XagI CCTNNNNNAGG 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.