RLG00000013832

Serine hydroxymethyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001957
Physical Location & Seq
Reverse (-)
42425682 .. 42426262
581 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013832

Sequence Viewer

Length: 453 bp
ATGGATAAGTGCCTTGCTTTTTGCCAAGAGCTACTTCCACTCTTCTACTTTCCTTCAAATATTAATCTTTGTTTGTTGAGGGCTGACCTATGCCACCAAAATATATCTGCAGTTGGAGAAAAGTGTCACACTATTCAGACCCAAATTAATAGTTGCTGGTGCCAGTGCTTGTGCACGCTTATAATACTATGCACGTATACGCAAGGTAATCTTTCACTTGAGGTCTGTGATAAGCAGAAAGCTATTTTGTTAGCTGATATGGCACACATCAGTGGATTGGTTGCGGTAGGTGTTATTCCATCTCCTTTTGAGTATGTAAATATTGTTACAACCACAAGTCATAATTCACTTCATGGCCCTCGTGGGGCTATGAACTTCTTCAGGAAGGGGGTCATAGCCCCACGAGGCCACAACTCCAAAGTTCAAAGCTTACCAAGAGCAAGTTCTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001505 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004372 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005840 GO:0005886 GO:0006082 GO:0006520 GO:0006544 GO:0006563 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007623 GO:0008150 GO:0008152 GO:0008187 GO:0008219 GO:0008266 GO:0009069 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009626 GO:0009628 GO:0009853 GO:0009987 GO:0010035 GO:0010038 GO:0010319 GO:0012501 GO:0016020 GO:0016740 GO:0016741 GO:0016742 GO:0017144 GO:0019752 GO:0022626 GO:0031967 GO:0031974 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033554 GO:0034050 GO:0042133 GO:0042221 GO:0043094 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045087 GO:0046686 GO:0048046 GO:0048511 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901605 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko00260 ko00460 ko00630 ko00670 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko01523 map00260 map00460 map00630 map00670 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map01523
Pfam Domains
Protein Families
SHMT

Protein Analysis

151

Amino Acids

16.51

Weight (kDa)

8.32

Isoelectric Point (pI)

53.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SHMT PF00464 74 - 132 3.3e-24 Serine hydroxymethyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 182
AccB1I GGYRCC 1 cut(s) 159
AccI GTMKAC 1 cut(s) 197
AciI CCGC 1 cut(s) 284
AcuI CTGAAG 1 cut(s) 364
AfiI CCNNNNNNNGG 1 cut(s) 364
AgsI TTSAA 2 cut(s) 57, 425
AjuI GAANNNNNNNTTGG 3 cut(s) 18, 50, 427
AleI CACNNNNGTG 1 cut(s) 270
AluBI AGCT 4 cut(s) 31, 242, 254, 429
AluI AGCT 4 cut(s) 31, 242, 254, 429
Alw21I GWGCWC 1 cut(s) 176
Alw44I GTGCAC 1 cut(s) 172
AoxI GGCC 2 cut(s) 355, 406
ApaLI GTGCAC 1 cut(s) 172
AseI ATTAAT 2 cut(s) 63, 147
Asp700I GAANNNNTTC 1 cut(s) 377
AspS9I GGNCC 1 cut(s) 356
BaeGI GKGCMC 1 cut(s) 176
BanI GGYRCC 1 cut(s) 159
BauI CACGAG 2 cut(s) 360, 402
Bbv12I GWGCWC 1 cut(s) 176
BccI CCATC 1 cut(s) 307
BfmI CTRYAG 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 356
BmiI GGNNCC 1 cut(s) 161
BpuEI CTTGAG 1 cut(s) 239
BsaAI YACGTR 1 cut(s) 195
Bsc4I CCNNNNNNNGG 1 cut(s) 364
Bse1I ACTGG 1 cut(s) 163
BseLI CCNNNNNNNGG 1 cut(s) 364
BseNI ACTGG 1 cut(s) 163
BseSI GKGCMC 1 cut(s) 176
BshFI GGCC 2 cut(s) 357, 408
BshNI GGYRCC 1 cut(s) 159
BsiHKAI GWGCWC 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 364
BsnI GGCC 2 cut(s) 357, 408
Bsp1286I GDGCHC 1 cut(s) 176
BspACI CCGC 1 cut(s) 284
BspANI GGCC 2 cut(s) 357, 408
BspLI GGNNCC 1 cut(s) 161
BspMAI CTGCAG 1 cut(s) 112
BspT107I GGYRCC 1 cut(s) 159
BsrI ACTGG 1 cut(s) 163
BssNAI GTATAC 1 cut(s) 198
BssSI CACGAG 2 cut(s) 360, 402
Bst1107I GTATAC 1 cut(s) 198
Bst2BI CACGAG 2 cut(s) 360, 402
Bst6I CTCTTC 1 cut(s) 47
BstBAI YACGTR 1 cut(s) 195
BstC8I GCNNGC 1 cut(s) 176
BstDEI CTNAG 1 cut(s) 447
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstSFI CTRYAG 1 cut(s) 108
BstSLI GKGCMC 1 cut(s) 176
BstZ17I GTATAC 1 cut(s) 198
BsuRI GGCC 2 cut(s) 357, 408
BtsIMutI CAGTG 2 cut(s) 170, 277
Cac8I GCNNGC 1 cut(s) 176
Cfr13I GGNCC 1 cut(s) 356
CviAII CATG 1 cut(s) 353
CviJI RGCY 9 cut(s) 31, 83, 242, 254, 357, 368, 398, 408, 429
CviKI_1 RGCY 9 cut(s) 31, 83, 242, 254, 357, 368, 398, 408, 429
DdeI CTNAG 1 cut(s) 447
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco57I CTGAAG 1 cut(s) 364
FaeI CATG 1 cut(s) 356
FalI AAGNNNNNCTT 4 cut(s) 18, 50, 195, 227
FatI CATG 1 cut(s) 352
FblI GTMKAC 1 cut(s) 197
HaeIII GGCC 2 cut(s) 357, 408
Hin1II CATG 1 cut(s) 356
HindIII AAGCTT 1 cut(s) 427
Hpy166II GTNNAC 2 cut(s) 174, 198
Hpy188I TCNGA 1 cut(s) 138
Hpy188III TCNNGA 1 cut(s) 382
Hpy8I GTNNAC 2 cut(s) 174, 198
HpyAV CCTTC 2 cut(s) 63, 379
HpyCH4IV ACGT 1 cut(s) 194
HpyCH4V TGCA 3 cut(s) 110, 174, 192
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpyF3I CTNAG 1 cut(s) 447
HpySE526I ACGT 1 cut(s) 194
Hsp92II CATG 1 cut(s) 356
LpnPI CCDG 3 cut(s) 142, 176, 367
MaeII ACGT 1 cut(s) 194
MaeIII GTNAC 2 cut(s) 125, 325
MboII GAAGA 2 cut(s) 34, 370
MhlI GDGCHC 1 cut(s) 176
MluCI AATT 2 cut(s) 144, 343
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 4 cut(s) 72, 214, 369, 398
MroXI GAANNNNTTC 1 cut(s) 377
MseI TTAA 2 cut(s) 63, 147
MslI CAYNNNNRTG 1 cut(s) 270
MwoI GCNNNNNNNGC 1 cut(s) 260
NlaIII CATG 1 cut(s) 356
NlaIV GGNNCC 1 cut(s) 161
NmuCI GTSAC 1 cut(s) 125
OliI CACNNNNGTG 1 cut(s) 270
PdmI GAANNNNTTC 1 cut(s) 377
Ppu21I YACGTR 1 cut(s) 195
PshBI ATTAAT 2 cut(s) 63, 147
PsiI TTATAA 1 cut(s) 182
PspN4I GGNNCC 1 cut(s) 161
PspPI GGNCC 1 cut(s) 356
PstI CTGCAG 1 cut(s) 112
RseI CAYNNNNRTG 1 cut(s) 270
SaqAI TTAA 2 cut(s) 63, 147
Sau96I GGNCC 1 cut(s) 356
SduI GDGCHC 1 cut(s) 176
SetI ASST 9 cut(s) 33, 90, 197, 208, 225, 244, 256, 292, 431
SfcI CTRYAG 1 cut(s) 108
SmiMI CAYNNNNRTG 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 2 cut(s) 144, 343
SsiI CCGC 1 cut(s) 284
SspI AATATT 2 cut(s) 61, 322
TaiI ACGT 1 cut(s) 197
TasI AATT 2 cut(s) 144, 343
Tru1I TTAA 2 cut(s) 63, 147
Tru9I TTAA 2 cut(s) 63, 147
TscAI CASTG 2 cut(s) 170, 277
TseFI GTSAC 1 cut(s) 125
Tsp45I GTSAC 1 cut(s) 125
TspDTI ATGAA 2 cut(s) 341, 386
TspRI CASTG 2 cut(s) 170, 277
VneI GTGCAC 1 cut(s) 172
VspI ATTAAT 2 cut(s) 63, 147
XmiI GTMKAC 1 cut(s) 197
XmnI GAANNNNTTC 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.