Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001957

Physical Location & Seq

Genomic Coordinates Reverse (-)

14516363 .. 14530714

Gene Structure 14352 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG156000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGCTCATCGTGGACCTATTCGGCACCGAATCTTTGCCCATTGCCGAGGAGTTTGGGATTCCAAAGTATGTGTACATTGCTTCCGATGCATGGTTCCTTTCTGTAATGATTTATTCTCCAACACTAGATGAGCAAGTTAAGGCTAAATATGTTGACCTCGAAGATCCACTAGAAATTCCTGGATACCCAGAACTTGATATCGTTGACGCTTTGCTGGACCGGAGTAATCAGCAGTACGATGAGCACATGCTGATGGGAAGAGGAATCCCAAAGGGTGATGGAATTTTGATAAACATATGGGAGGAACTAGAGCCCAAGTCCCTAGCAGCACTAAGAGATGAGAAATTCTTGGGCCGATTTGCGAATGTGCTTGTCTTTCCAATTGGGCCGTTGATGAGGCCCAATGTGTCTTCTAGCTTGAGGGGTGATGTGTTTGATTGGCTAGATGAGCTGCCCAATGAATTTGTGATTTACATGTCCTTTGGAAACGGTGGGGCCCTGTCATCTGAACAAATGGTCGAGCTAGCTTGGGGTTTAGAGATGAGTCAACAGAGTTTAGCCCTTCTGTTGGAGAAAAGTGCCACACTATTCAGACCCAAATTAATAGTTGCTGGTGCCAATGCTTGTGCATGTTTGTACGACTATGCACACATACGCAAGGTCTGTGATAAGCAGAAAGCTATTTTGTTAGCTGATATGGCACACATCAGTGGATTGGTTGCGGCAGGTGTTATTCCATCTCCTTTTGAGTATGCAGATATTGTTACAACCACAACTCACAAGTCACTTCGTAGCCCTCGTGGGGCTATGATCTTCTTCAGGAAGGGGGTCAAAAATGTAAACAAGCAAGGACAAGAAGCTGTCTTTCCTGGACTCCAAGGTGGTCCACACAATCACACCATAGCTGGGTTAGCAGTTGCACTCAAGCAGGCCACAACTCCAGAGTTCAAAGCTTACCAAGAGCAAGTTCTCAGTAATTCCGCAAAATTTGTAGAGAGCTTGCTAGAGAAGGGCTATGATCTTGTCTCTGGTGGAACTGACAACCATTTAGTATTGGTAAATTTGAGGGACAAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00940 map00940

Pfam Domains

Protein Families

UDPGT

Protein Analysis

359

Amino Acids

39.67

Weight (kDa)

5.05

Isoelectric Point (pI)

46.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SHMT	PF00464	190 - 358	5.3e-80	Serine hydroxymethyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26780 AT5G26780 AT5G26780 AT5G26780
fragaria_vesca	FvH4_5g34000 FvH4_5g34000 FvH4_5g34000
malus_domestica	MD08G1206800.v1.1 MD15G1390500.v1.1
prunus_persica	Prupe.1G539400_v2.0.a1 Prupe.1G539400_v2.0.a1 Prupe.1G539400_v2.0.a1 Prupe.1G539400_v2.0.a1
pyrus_communis	pycom08g17860
rosa_chinensis	RchiOBHm_Chr5g0052761 RchiOBHm_Chr7g0233441 RchiOBHm_Chr7g0235741
rosa_laevigata	RLG00000001270 RLG00000013832 RLG00000035486
rosa_multiflora	Rmu_sc0000029.1_g000053 Rmu_sc0006510.1_g000006
rosa_roxburghii	Rroxscaffold_3G00227300 Rroxscaffold_3G00241170
rosa_rugosa	Rorug07G0280700
rosa_samantha	Rh1CG020600 Rh1CG022300 Rh2AG156000 Rh2BG162300 Rh2BG221600 Rh2DG161400 Rh4DG362000 Rh5BG352800 Rh5CG247000 Rh5CG419500 Rh5DG369100 Rh7AG154700 Rh7AG436500 Rh7AG488000 Rh7BG409600 Rh7CG456400 Rh7DG425700
rosa_wichuraiana	Rw0G022490 Rw7G035990 Rw7G036020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	716
Acc36I	ACCTGC	1 cut(s)	716
AccB1I	GGYRCC	2 cut(s)	23, 614
AciI	CCGC	2 cut(s)	722, 981
AclWI	GGATC	1 cut(s)	158
AcsI	RAATTY	6 cut(s)	174, 282, 344, 461, 986, 1060
AcuI	CTGAAG	1 cut(s)	802
AfaI	GTAC	3 cut(s)	74, 236, 638
AfiI	CCNNNNNNNGG	4 cut(s)	90, 568, 802, 906
AflIII	ACRYGT	1 cut(s)	474
AgsI	TTSAA	1 cut(s)	949
AjnI	CCWGG	2 cut(s)	178, 868
AjuI	GAANNNNNNNTTGG	2 cut(s)	951, 983
AleI	CACNNNNGTG	1 cut(s)	708
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	1 cut(s)	1030
AlwI	GGATC	1 cut(s)	158
AoxI	GGCC	5 cut(s)	352, 386, 398, 495, 930
ApaI	GGGCCC	1 cut(s)	499
ApeKI	GCWGC	2 cut(s)	326, 451
ApoI	RAATTY	6 cut(s)	174, 282, 344, 461, 986, 1060
AseI	ATTAAT	1 cut(s)	602
AspS9I	GGNCC	8 cut(s)	13, 217, 352, 386, 399, 495, 496, 884
AsuHPI	GGTGA	2 cut(s)	287, 437
AsuNHI	GCTAGC	1 cut(s)	523
AvaII	GGWCC	3 cut(s)	13, 217, 884
BaeGI	GKGCMC	1 cut(s)	499
BanI	GGYRCC	2 cut(s)	23, 614
BanII	GRGCYC	2 cut(s)	315, 499
BauI	CACGAG	1 cut(s)	798
BbsI	GAAGAC	1 cut(s)	402
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	2 cut(s)	338, 438
BccI	CCATC	3 cut(s)	247, 272, 745
BceAI	ACGGC	1 cut(s)	373
BciT130I	CCWGG	2 cut(s)	180, 870
BciVI	GTATCC	1 cut(s)	176
BcoDI	GTCTC	1 cut(s)	1030
BfaI	CTAG	8 cut(s)	125, 170, 308, 323, 414, 443, 524, 1004
BfuAI	ACCTGC	1 cut(s)	716
BfuI	GTATCC	1 cut(s)	176
BisI	GCNGC	3 cut(s)	327, 452, 723
BlsI	GCNGC	3 cut(s)	328, 453, 724
Bme1390I	CCNGG	2 cut(s)	180, 870
Bme18I	GGWCC	3 cut(s)	13, 217, 884
BmgT120I	GGNCC	8 cut(s)	13, 217, 352, 386, 399, 495, 496, 884
BmiI	GGNNCC	5 cut(s)	25, 95, 496, 497, 616
BmrFI	CCNGG	2 cut(s)	180, 870
BmsI	GCATC	1 cut(s)	76
BmtI	GCTAGC	1 cut(s)	527
BpiI	GAAGAC	1 cut(s)	402
BpmI	CTGGAG	1 cut(s)	924
BpuEI	CTTGAG	2 cut(s)	439, 908
BsaJI	CCNNGG	2 cut(s)	45, 877
BsaWI	WCCGGW	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	4 cut(s)	90, 568, 802, 906
Bse3DI	GCAATG	2 cut(s)	39, 75
BseBI	CCWGG	2 cut(s)	180, 870
BseDI	CCNNGG	2 cut(s)	45, 877
BseLI	CCNNNNNNNGG	4 cut(s)	90, 568, 802, 906
BseMI	GCAATG	2 cut(s)	39, 75
BseMII	CTCAG	1 cut(s)	985
BseRI	GAGGAG	1 cut(s)	62
BseSI	GKGCMC	1 cut(s)	499
BseXI	GCAGC	2 cut(s)	338, 438
BseYI	CCCAGC	1 cut(s)	905
BshFI	GGCC	5 cut(s)	354, 388, 400, 497, 932
BshNI	GGYRCC	2 cut(s)	23, 614
BsiHKAI	GWGCWC	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	220
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	4 cut(s)	90, 568, 802, 906
BsmAI	GTCTC	1 cut(s)	1030
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	5 cut(s)	354, 388, 400, 497, 932
Bsp120I	GGGCCC	1 cut(s)	495
Bsp1286I	GDGCHC	3 cut(s)	246, 315, 499
Bsp1407I	TGTACA	1 cut(s)	72
Bsp143I	GATC	3 cut(s)	163, 810, 1018
BspACI	CCGC	2 cut(s)	722, 981
BspANI	GGCC	5 cut(s)	354, 388, 400, 497, 932
BspCNI	CTCAG	1 cut(s)	984
BspLI	GGNNCC	5 cut(s)	25, 95, 496, 497, 616
BspMI	ACCTGC	1 cut(s)	716
BspOI	GCTAGC	1 cut(s)	527
BspPI	GGATC	1 cut(s)	158
BspT107I	GGYRCC	2 cut(s)	23, 614
BsrDI	GCAATG	2 cut(s)	39, 75
BsrGI	TGTACA	1 cut(s)	72
BssECI	CCNNGG	2 cut(s)	45, 877
BssMI	GATC	3 cut(s)	163, 810, 1018
BssSI	CACGAG	1 cut(s)	798
BssT1I	CCWWGG	1 cut(s)	877
Bst2BI	CACGAG	1 cut(s)	798
Bst2UI	CCWGG	2 cut(s)	180, 870
Bst4CI	ACNGT	1 cut(s)	491
Bst6I	CTCTTC	1 cut(s)	253
BstAUI	TGTACA	1 cut(s)	72
BstC8I	GCNNGC	3 cut(s)	525, 930, 1001
BstDEI	CTNAG	2 cut(s)	332, 971
BstKTI	GATC	3 cut(s)	166, 813, 1021
BstMAI	GTCTC	1 cut(s)	1030
BstMBI	GATC	3 cut(s)	163, 810, 1018
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 448, 698, 911
BstNI	CCWGG	2 cut(s)	180, 870
BstNSI	RCATGY	3 cut(s)	250, 478, 633
BstSCI	CCNGG	2 cut(s)	178, 868
BstSLI	GKGCMC	1 cut(s)	499
BstV1I	GCAGC	2 cut(s)	338, 438
BstV2I	GAAGAC	1 cut(s)	402
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BsuI	GTATCC	1 cut(s)	176
BsuRI	GGCC	5 cut(s)	354, 388, 400, 497, 932
BtsIMutI	CAGTG	1 cut(s)	715
BveI	ACCTGC	1 cut(s)	716
Cac8I	GCNNGC	3 cut(s)	525, 930, 1001
Cfr13I	GGNCC	8 cut(s)	13, 217, 352, 386, 399, 495, 496, 884
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	3 cut(s)	73, 235, 637
CviAII	CATG	4 cut(s)	90, 247, 475, 630
CviQI	GTAC	3 cut(s)	73, 235, 637
DdeI	CTNAG	2 cut(s)	332, 971
DpnI	GATC	3 cut(s)	165, 812, 1020
DpnII	GATC	3 cut(s)	163, 810, 1018
Eam1104I	CTCTTC	1 cut(s)	253
EarI	CTCTTC	1 cut(s)	253
Eco130I	CCWWGG	1 cut(s)	877
Eco24I	GRGCYC	2 cut(s)	315, 499
Eco32I	GATATC	1 cut(s)	199
Eco47I	GGWCC	3 cut(s)	13, 217, 884
Eco57I	CTGAAG	1 cut(s)	802
EcoO109I	RGGNCCY	2 cut(s)	495, 496
EcoRII	CCWGG	2 cut(s)	178, 868
EcoRV	GATATC	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	877
EcoT22I	ATGCAT	1 cut(s)	91
EcoT38I	GRGCYC	2 cut(s)	315, 499
ErhI	CCWWGG	1 cut(s)	877
FaeI	CATG	4 cut(s)	93, 250, 478, 633
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	4 cut(s)	89, 246, 474, 629
FauNDI	CATATG	1 cut(s)	296
Fnu4HI	GCNGC	3 cut(s)	327, 452, 723
FriOI	GRGCYC	2 cut(s)	315, 499
Fsp4HI	GCNGC	3 cut(s)	327, 452, 723
FspBI	CTAG	8 cut(s)	125, 170, 308, 323, 414, 443, 524, 1004
GluI	GCNGC	3 cut(s)	327, 452, 723
GsaI	CCCAGC	1 cut(s)	909
GsuI	CTGGAG	1 cut(s)	924
HaeIII	GGCC	5 cut(s)	354, 388, 400, 497, 932
HapII	CCGG	1 cut(s)	220
HgaI	GACGC	1 cut(s)	215
Hin1II	CATG	4 cut(s)	93, 250, 478, 633
HincII	GTYRAC	3 cut(s)	154, 205, 548
HindII	GTYRAC	3 cut(s)	154, 205, 548
HindIII	AAGCTT	1 cut(s)	951
HinfI	GANTC	5 cut(s)	29, 58, 264, 544, 873
HpaII	CCGG	1 cut(s)	220
HphI	GGTGA	2 cut(s)	287, 437
Hpy166II	GTNNAC	7 cut(s)	13, 73, 154, 205, 548, 841, 887
Hpy188I	TCNGA	3 cut(s)	85, 508, 593
Hpy188III	TCNNGA	2 cut(s)	820, 941
Hpy8I	GTNNAC	7 cut(s)	13, 73, 154, 205, 548, 841, 887
HpyAV	CCTTC	3 cut(s)	572, 817, 1003
HpyCH4III	ACNGT	1 cut(s)	491
HpyCH4V	TGCA	5 cut(s)	89, 629, 647, 755, 920
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 448, 698, 911
HpyF3I	CTNAG	2 cut(s)	332, 971
Hsp92II	CATG	4 cut(s)	93, 250, 478, 633
Kzo9I	GATC	3 cut(s)	163, 810, 1018
Lsp1109I	GCAGC	2 cut(s)	338, 438
LweI	GCATC	1 cut(s)	76
MaeI	CTAG	8 cut(s)	125, 170, 308, 323, 414, 443, 524, 1004
MaeIII	GTNAC	2 cut(s)	763, 783
MalI	GATC	3 cut(s)	165, 812, 1020
MboI	GATC	3 cut(s)	163, 810, 1018
MboII	GAAGA	5 cut(s)	173, 270, 402, 805, 808
MfeI	CAATTG	1 cut(s)	381
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	3 cut(s)	246, 315, 499
MluCI	AATT	9 cut(s)	174, 282, 344, 381, 461, 599, 976, 986, 1060
MlyI	GAGTC	2 cut(s)	553, 867
MmeI	TCCRAC	2 cut(s)	143, 549
MnlI	CCTC	8 cut(s)	40, 167, 254, 295, 390, 414, 807, 1059
Mph1103I	ATGCAT	1 cut(s)	91
MseI	TTAA	2 cut(s)	138, 602
MslI	CAYNNNNRTG	2 cut(s)	251, 708
MspI	CCGG	1 cut(s)	220
MspR9I	CCNGG	2 cut(s)	180, 870
MunI	CAATTG	1 cut(s)	381
MvaI	CCWGG	2 cut(s)	180, 870
MwoI	GCNNNNNNNGC	4 cut(s)	86, 448, 698, 911
NdeI	CATATG	1 cut(s)	296
NdeII	GATC	3 cut(s)	163, 810, 1018
NheI	GCTAGC	1 cut(s)	523
NlaIII	CATG	4 cut(s)	93, 250, 478, 633
NlaIV	GGNNCC	5 cut(s)	25, 95, 496, 497, 616
NmeAIII	GCCGAG	1 cut(s)	70
NmuCI	GTSAC	1 cut(s)	783
NsiI	ATGCAT	1 cut(s)	91
NspI	RCATGY	3 cut(s)	250, 478, 633
OliI	CACNNNNGTG	1 cut(s)	708
PaqCI	CACCTGC	1 cut(s)	716
PciI	ACATGT	1 cut(s)	474
PcsI	WCGNNNNNNNCGW	1 cut(s)	796
PfeI	GAWTC	3 cut(s)	29, 58, 264
PfoI	TCCNGGA	2 cut(s)	178, 868
PkrI	GCNGC	3 cut(s)	328, 453, 724
PleI	GAGTC	2 cut(s)	552, 867
PpsI	GAGTC	2 cut(s)	552, 867
PscI	ACATGT	1 cut(s)	474
PshBI	ATTAAT	1 cut(s)	602
Psp6I	CCWGG	2 cut(s)	178, 868
PspFI	CCCAGC	1 cut(s)	905
PspGI	CCWGG	2 cut(s)	178, 868
PspN4I	GGNNCC	5 cut(s)	25, 95, 496, 497, 616
PspOMI	GGGCCC	1 cut(s)	495
PspPI	GGNCC	8 cut(s)	13, 217, 352, 386, 399, 495, 496, 884
PsuI	RGATCY	1 cut(s)	163
RsaI	GTAC	3 cut(s)	74, 236, 638
RsaNI	GTAC	3 cut(s)	73, 235, 637
RseI	CAYNNNNRTG	2 cut(s)	251, 708
SaqAI	TTAA	2 cut(s)	138, 602
SatI	GCNGC	3 cut(s)	327, 452, 723
Sau3AI	GATC	3 cut(s)	163, 810, 1018
Sau96I	GGNCC	8 cut(s)	13, 217, 352, 386, 399, 495, 496, 884
SchI	GAGTC	2 cut(s)	553, 867
ScrFI	CCNGG	2 cut(s)	180, 870
SduI	GDGCHC	3 cut(s)	246, 315, 499
SfaNI	GCATC	1 cut(s)	76
SinI	GGWCC	3 cut(s)	13, 217, 884
SmiMI	CAYNNNNRTG	2 cut(s)	251, 708
SmlI	CTYRAG	2 cut(s)	418, 923
SmoI	CTYRAG	2 cut(s)	418, 923
Sse9I	AATT	9 cut(s)	174, 282, 344, 381, 461, 599, 976, 986, 1060
SsiI	CCGC	2 cut(s)	722, 981
SspMI	CTAG	8 cut(s)	125, 170, 308, 323, 414, 443, 524, 1004
StyD4I	CCNGG	2 cut(s)	178, 868
StyI	CCWWGG	1 cut(s)	877
TaaI	ACNGT	1 cut(s)	491
TaqI	TCGA	2 cut(s)	159, 519
TasI	AATT	9 cut(s)	174, 282, 344, 381, 461, 599, 976, 986, 1060
TatI	WGTACW	1 cut(s)	72
TauI	GCSGC	1 cut(s)	725
TfiI	GAWTC	3 cut(s)	29, 58, 264
Tru1I	TTAA	2 cut(s)	138, 602
Tru9I	TTAA	2 cut(s)	138, 602
TscAI	CASTG	1 cut(s)	715
TseFI	GTSAC	1 cut(s)	783
TseI	GCWGC	2 cut(s)	326, 451
Tsp45I	GTSAC	1 cut(s)	783
TspDTI	ATGAA	1 cut(s)	474
TspRI	CASTG	1 cut(s)	715
VpaK11BI	GGWCC	3 cut(s)	13, 217, 884
VspI	ATTAAT	1 cut(s)	602
XapI	RAATTY	6 cut(s)	174, 282, 344, 461, 986, 1060
XceI	RCATGY	3 cut(s)	250, 478, 633
XspI	CTAG	8 cut(s)	125, 170, 308, 323, 414, 443, 524, 1004
Zsp2I	ATGCAT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.