Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001957

Physical Location & Seq

Genomic Coordinates Forward (+)

60662316 .. 60663730

Gene Structure 1415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21125

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGCCATACAGATTGGATGAAACCACTGTTGAAGATAGTGCCACACTATTCAGACCCAAATTAATAGTTGCTGGTGCCAGTGCTTGTGCACGCTTGTACGACTATGCATGCATACGCAAGGTCTGTGATAAGCAGAAAGCTATTTTGTTAGCTGATATGGCACACATCACTGGATTGGTTGCGGCAGGTACCTTGCTAGAGAAGGGCTATGATCTTGTCTCTGGTGGAATTGACAACCATTTAGTGTTGGTAAATTTGAGGGACAAGGTAAAAGGAGATTCTTCCTTCCTATTATTGTTTGTTCTTCATTTTCTTTTCTGCATCTGGGAGATTTATTTGGACCAAGTATATTCTTTCTGCTTGTTAGACAAAATCCTAGGGCCTTGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00260 ko00460 ko00630 ko00670 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko01523 map00260 map00460 map00630 map00670 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map01523

Pfam Domains

Protein Families

SHMT

Protein Analysis

130

Amino Acids

14.59

Weight (kDa)

5.55

Isoelectric Point (pI)

34.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SHMT	PF00464	5 - 64	1.6e-20	Serine hydroxymethyltransferase
SHMT	PF00464	64 - 92	3.8e-06	Serine hydroxymethyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26780 AT5G26780 AT5G26780 AT5G26780
fragaria_vesca	FvH4_5g34000 FvH4_5g34000 FvH4_5g34000
malus_domestica	MD08G1206800.v1.1 MD15G1390500.v1.1
prunus_persica	Prupe.1G539400_v2.0.a1 Prupe.1G539400_v2.0.a1 Prupe.1G539400_v2.0.a1 Prupe.1G539400_v2.0.a1
pyrus_communis	pycom08g17860
rosa_chinensis	RchiOBHm_Chr5g0052761 RchiOBHm_Chr7g0233441 RchiOBHm_Chr7g0235741
rosa_laevigata	RLG00000001270 RLG00000013832 RLG00000035486
rosa_multiflora	Rmu_sc0000029.1_g000053 Rmu_sc0006510.1_g000006
rosa_roxburghii	Rroxscaffold_3G00227300 Rroxscaffold_3G00241170
rosa_rugosa	Rorug07G0280700
rosa_samantha	Rh1CG020600 Rh1CG022300 Rh2AG156000 Rh2BG162300 Rh2BG221600 Rh2DG161400 Rh4DG362000 Rh5BG352800 Rh5CG247000 Rh5CG419500 Rh5DG369100 Rh7AG154700 Rh7AG436500 Rh7AG488000 Rh7BG409600 Rh7CG456400 Rh7DG425700
rosa_wichuraiana	Rw0G022490 Rw7G035990 Rw7G036020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	176
Acc65I	GGTACC	1 cut(s)	188
AccB1I	GGYRCC	2 cut(s)	74, 188
AciI	CCGC	1 cut(s)	182
AcsI	RAATTY	1 cut(s)	253
AfaI	GTAC	2 cut(s)	98, 190
AgsI	TTSAA	1 cut(s)	32
AluBI	AGCT	2 cut(s)	140, 152
AluI	AGCT	2 cut(s)	140, 152
Alw21I	GWGCWC	1 cut(s)	91
Alw26I	GTCTC	1 cut(s)	223
Alw44I	GTGCAC	1 cut(s)	87
AoxI	GGCC	1 cut(s)	380
ApaLI	GTGCAC	1 cut(s)	87
ApoI	RAATTY	1 cut(s)	253
AseI	ATTAAT	1 cut(s)	62
Asp718I	GGTACC	1 cut(s)	188
AspA2I	CCTAGG	1 cut(s)	376
AspS9I	GGNCC	2 cut(s)	340, 380
AvaII	GGWCC	1 cut(s)	340
AvrII	CCTAGG	1 cut(s)	376
BaeGI	GKGCMC	1 cut(s)	91
BanI	GGYRCC	2 cut(s)	74, 188
Bbv12I	GWGCWC	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	223
BfaI	CTAG	2 cut(s)	197, 377
BfuAI	ACCTGC	1 cut(s)	176
BisI	GCNGC	1 cut(s)	183
BlnI	CCTAGG	1 cut(s)	376
BlsI	GCNGC	1 cut(s)	184
Bme18I	GGWCC	1 cut(s)	340
BmgT120I	GGNCC	2 cut(s)	340, 380
BmiI	GGNNCC	2 cut(s)	76, 190
BmsI	GCATC	1 cut(s)	330
BsaJI	CCNNGG	2 cut(s)	376, 383
Bse1I	ACTGG	2 cut(s)	78, 175
BseDI	CCNNGG	2 cut(s)	376, 383
BseGI	GGATG	1 cut(s)	22
BseNI	ACTGG	2 cut(s)	78, 175
BseSI	GKGCMC	1 cut(s)	91
BshFI	GGCC	1 cut(s)	382
BshNI	GGYRCC	2 cut(s)	74, 188
BsiHKAI	GWGCWC	1 cut(s)	91
BslFI	GGGAC	1 cut(s)	275
BsmAI	GTCTC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	275
BsnI	GGCC	1 cut(s)	382
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	1 cut(s)	211
BspACI	CCGC	1 cut(s)	182
BspANI	GGCC	1 cut(s)	382
BspLI	GGNNCC	2 cut(s)	76, 190
BspMI	ACCTGC	1 cut(s)	176
BspT107I	GGYRCC	2 cut(s)	74, 188
BsrI	ACTGG	2 cut(s)	78, 175
BssECI	CCNNGG	2 cut(s)	376, 383
BssMI	GATC	1 cut(s)	211
BssT1I	CCWWGG	2 cut(s)	376, 383
Bst4CI	ACNGT	1 cut(s)	28
BstC8I	GCNNGC	2 cut(s)	91, 109
BstF5I	GGATG	1 cut(s)	22
BstKTI	GATC	1 cut(s)	214
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	211
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNSI	RCATGY	1 cut(s)	111
BstSLI	GKGCMC	1 cut(s)	91
BsuRI	GGCC	1 cut(s)	382
BtsCI	GGATG	1 cut(s)	22
BtsIMutI	CAGTG	3 cut(s)	24, 85, 168
BveI	ACCTGC	1 cut(s)	176
Cac8I	GCNNGC	2 cut(s)	91, 109
Cfr13I	GGNCC	2 cut(s)	340, 380
Csp6I	GTAC	2 cut(s)	97, 189
CviAII	CATG	1 cut(s)	108
CviJI	RGCY	4 cut(s)	140, 152, 207, 382
CviKI_1	RGCY	4 cut(s)	140, 152, 207, 382
CviQI	GTAC	2 cut(s)	97, 189
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
Eco130I	CCWWGG	2 cut(s)	376, 383
Eco47I	GGWCC	1 cut(s)	340
EcoO109I	RGGNCCY	1 cut(s)	380
EcoT14I	CCWWGG	2 cut(s)	376, 383
EcoT22I	ATGCAT	2 cut(s)	109, 113
ErhI	CCWWGG	2 cut(s)	376, 383
FaeI	CATG	1 cut(s)	111
FaiI	YATR	7 cut(s)	7, 105, 109, 113, 158, 210, 349
FaqI	GGGAC	1 cut(s)	275
FatI	CATG	1 cut(s)	107
Fnu4HI	GCNGC	1 cut(s)	183
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	183
FspBI	CTAG	2 cut(s)	197, 377
GluI	GCNGC	1 cut(s)	183
HaeIII	GGCC	1 cut(s)	382
Hin1II	CATG	1 cut(s)	111
HinfI	GANTC	1 cut(s)	278
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188I	TCNGA	1 cut(s)	53
Hpy8I	GTNNAC	1 cut(s)	89
HpyAV	CCTTC	2 cut(s)	196, 295
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4V	TGCA	4 cut(s)	89, 107, 111, 321
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
Hsp92II	CATG	1 cut(s)	111
KpnI	GGTACC	1 cut(s)	192
Kzo9I	GATC	1 cut(s)	211
LpnPI	CCDG	6 cut(s)	57, 91, 156, 171, 207, 310
LweI	GCATC	1 cut(s)	330
MaeI	CTAG	2 cut(s)	197, 377
MalI	GATC	1 cut(s)	213
MboI	GATC	1 cut(s)	211
MboII	GAAGA	3 cut(s)	44, 273, 296
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	3 cut(s)	59, 228, 253
MnlI	CCTC	1 cut(s)	252
Mph1103I	ATGCAT	2 cut(s)	109, 113
MseI	TTAA	1 cut(s)	62
MwoI	GCNNNNNNNGC	1 cut(s)	158
NdeII	GATC	1 cut(s)	211
NlaIII	CATG	1 cut(s)	111
NlaIV	GGNNCC	2 cut(s)	76, 190
NsiI	ATGCAT	2 cut(s)	109, 113
NspI	RCATGY	1 cut(s)	111
PaeI	GCATGC	1 cut(s)	111
PfeI	GAWTC	1 cut(s)	278
PkrI	GCNGC	1 cut(s)	184
PshBI	ATTAAT	1 cut(s)	62
PspN4I	GGNNCC	2 cut(s)	76, 190
PspPI	GGNCC	2 cut(s)	340, 380
RsaI	GTAC	2 cut(s)	98, 190
RsaNI	GTAC	2 cut(s)	97, 189
SaqAI	TTAA	1 cut(s)	62
SatI	GCNGC	1 cut(s)	183
Sau3AI	GATC	1 cut(s)	211
Sau96I	GGNCC	2 cut(s)	340, 380
SduI	GDGCHC	1 cut(s)	91
SetI	ASST	6 cut(s)	123, 142, 154, 190, 194, 270
SfaNI	GCATC	1 cut(s)	330
SinI	GGWCC	1 cut(s)	340
SphI	GCATGC	1 cut(s)	111
Sse9I	AATT	3 cut(s)	59, 228, 253
SsiI	CCGC	1 cut(s)	182
SspMI	CTAG	2 cut(s)	197, 377
StyI	CCWWGG	2 cut(s)	376, 383
TaaI	ACNGT	1 cut(s)	28
TasI	AATT	3 cut(s)	59, 228, 253
TauI	GCSGC	1 cut(s)	185
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	1 cut(s)	62
Tru9I	TTAA	1 cut(s)	62
TscAI	CASTG	3 cut(s)	31, 85, 175
TspDTI	ATGAA	2 cut(s)	33, 296
TspRI	CASTG	3 cut(s)	31, 85, 175
VneI	GTGCAC	1 cut(s)	87
VpaK11BI	GGWCC	1 cut(s)	340
VspI	ATTAAT	1 cut(s)	62
XapI	RAATTY	1 cut(s)	253
XceI	RCATGY	1 cut(s)	111
XmaJI	CCTAGG	1 cut(s)	376
XspI	CTAG	2 cut(s)	197, 377
Zsp2I	ATGCAT	2 cut(s)	109, 113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.