Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001957

Physical Location & Seq

Genomic Coordinates Forward (+)

54134054 .. 54134519

Gene Structure 466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G036020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGTCCCTGGTGGTATACGTATGGGTAAGACCTGGATTTTAACATTTTTCCAGCAGCTAGTCATAGCTAGGTACTTCTATTCTGATCAAGGTCCTGTTTTTGATTCTTCAGGAACCCCAGCTCTCACATCTAGGGGTTTTATGGAGGATGATTTTGAAAAAGTAGCAGAGTATTTTGATGCAGCCGTGAAGATAGCCTTGAAGATTAAGGCTGCTACAAAAGGTACCAAGTTAAAGGATTTTGTGGCAACTCTGGAATCAGATGGTCAAATACAATCTGAGATTGCAAAGCTACGCCACGAGGTTGAGCAGTATGCTAAAGAATTTCCAACTATTGGATTTGAGAAAGAAACAATGAGATACAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00260 ko00460 ko00630 ko00670 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko01523 map00260 map00460 map00630 map00670 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map01523

Pfam Domains

Protein Families

SHMT

Protein Analysis

123

Amino Acids

13.97

Weight (kDa)

5.91

Isoelectric Point (pI)

32.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26780 AT5G26780 AT5G26780 AT5G26780
fragaria_vesca	FvH4_5g34000 FvH4_5g34000 FvH4_5g34000
malus_domestica	MD08G1206800.v1.1 MD15G1390500.v1.1
prunus_persica	Prupe.1G539400_v2.0.a1 Prupe.1G539400_v2.0.a1 Prupe.1G539400_v2.0.a1 Prupe.1G539400_v2.0.a1
pyrus_communis	pycom08g17860
rosa_chinensis	RchiOBHm_Chr5g0052761 RchiOBHm_Chr7g0233441 RchiOBHm_Chr7g0235741
rosa_laevigata	RLG00000001270 RLG00000013832 RLG00000035486
rosa_multiflora	Rmu_sc0000029.1_g000053 Rmu_sc0006510.1_g000006
rosa_roxburghii	Rroxscaffold_3G00227300 Rroxscaffold_3G00241170
rosa_rugosa	Rorug07G0280700
rosa_samantha	Rh1CG020600 Rh1CG022300 Rh2AG156000 Rh2BG162300 Rh2BG221600 Rh2DG161400 Rh4DG362000 Rh5BG352800 Rh5CG247000 Rh5CG419500 Rh5DG369100 Rh7AG154700 Rh7AG436500 Rh7AG488000 Rh7BG409600 Rh7CG456400 Rh7DG425700
rosa_wichuraiana	Rw0G022490 Rw7G035990 Rw7G036020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	224
AccB1I	GGYRCC	1 cut(s)	224
AccB7I	CCANNNNNTGG	1 cut(s)	335
AccI	GTMKAC	1 cut(s)	16
AcsI	RAATTY	1 cut(s)	323
AcuI	CTGAAG	1 cut(s)	93
AfaI	GTAC	2 cut(s)	74, 226
AfiI	CCNNNNNNNGG	1 cut(s)	335
AgsI	TTSAA	2 cut(s)	158, 202
AjnI	CCWGG	2 cut(s)	7, 32
AluBI	AGCT	4 cut(s)	58, 68, 122, 292
AluI	AGCT	4 cut(s)	58, 68, 122, 292
ApeKI	GCWGC	3 cut(s)	55, 182, 212
ApoI	RAATTY	1 cut(s)	323
Asp718I	GGTACC	1 cut(s)	224
AspS9I	GGNCC	2 cut(s)	4, 92
AvaII	GGWCC	2 cut(s)	4, 92
BanI	GGYRCC	1 cut(s)	224
BauI	CACGAG	1 cut(s)	299
BbvI	GCAGC	3 cut(s)	67, 194, 199
BccI	CCATC	1 cut(s)	257
BceAI	ACGGC	1 cut(s)	170
BciT130I	CCWGG	2 cut(s)	9, 34
BclI	TGATCA	1 cut(s)	85
BfaI	CTAG	3 cut(s)	59, 69, 132
BisI	GCNGC	3 cut(s)	56, 183, 213
BlsI	GCNGC	3 cut(s)	57, 184, 214
Bme1390I	CCNGG	2 cut(s)	9, 34
Bme18I	GGWCC	2 cut(s)	4, 92
BmgT120I	GGNCC	2 cut(s)	4, 92
BmiI	GGNNCC	3 cut(s)	6, 115, 226
BmrFI	CCNGG	2 cut(s)	9, 34
BmsI	GCATC	1 cut(s)	169
BsaAI	YACGTR	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	7
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
BseBI	CCWGG	2 cut(s)	9, 34
BseDI	CCNNGG	1 cut(s)	7
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseMII	CTCAG	1 cut(s)	270
BseXI	GCAGC	3 cut(s)	67, 194, 199
BseYI	CCCAGC	1 cut(s)	118
BshNI	GGYRCC	1 cut(s)	224
BslI	CCNNNNNNNGG	1 cut(s)	335
Bsp143I	GATC	1 cut(s)	85
BspCNI	CTCAG	1 cut(s)	271
BspLI	GGNNCC	3 cut(s)	6, 115, 226
BspT107I	GGYRCC	1 cut(s)	224
BssECI	CCNNGG	1 cut(s)	7
BssMI	GATC	1 cut(s)	85
BssNAI	GTATAC	1 cut(s)	17
BssSI	CACGAG	1 cut(s)	299
Bst1107I	GTATAC	1 cut(s)	17
Bst2BI	CACGAG	1 cut(s)	299
Bst2UI	CCWGG	2 cut(s)	9, 34
BstBAI	YACGTR	1 cut(s)	20
BstDEI	CTNAG	1 cut(s)	279
BstF5I	GGATG	1 cut(s)	154
BstKTI	GATC	1 cut(s)	88
BstMBI	GATC	1 cut(s)	85
BstNI	CCWGG	2 cut(s)	9, 34
BstSCI	CCNGG	2 cut(s)	7, 32
BstSNI	TACGTA	1 cut(s)	20
BstV1I	GCAGC	3 cut(s)	67, 194, 199
BstZ17I	GTATAC	1 cut(s)	17
BtsCI	GGATG	1 cut(s)	154
Cfr13I	GGNCC	2 cut(s)	4, 92
Csp6I	GTAC	2 cut(s)	73, 225
CviJI	RGCY	7 cut(s)	58, 68, 122, 185, 197, 212, 292
CviKI_1	RGCY	7 cut(s)	58, 68, 122, 185, 197, 212, 292
CviQI	GTAC	2 cut(s)	73, 225
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
Eco105I	TACGTA	1 cut(s)	20
Eco47I	GGWCC	2 cut(s)	4, 92
Eco57I	CTGAAG	1 cut(s)	93
EcoO109I	RGGNCCY	1 cut(s)	92
EcoRII	CCWGG	2 cut(s)	7, 32
FaiI	YATR	5 cut(s)	17, 23, 65, 143, 315
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FbaI	TGATCA	1 cut(s)	85
FblI	GTMKAC	1 cut(s)	16
Fnu4HI	GCNGC	3 cut(s)	56, 183, 213
FokI	GGATG	1 cut(s)	161
Fsp4HI	GCNGC	3 cut(s)	56, 183, 213
FspBI	CTAG	3 cut(s)	59, 69, 132
GluI	GCNGC	3 cut(s)	56, 183, 213
GsaI	CCCAGC	1 cut(s)	122
HinfI	GANTC	2 cut(s)	104, 257
Hpy166II	GTNNAC	1 cut(s)	17
Hpy188I	TCNGA	3 cut(s)	85, 262, 280
Hpy188III	TCNNGA	2 cut(s)	111, 254
Hpy8I	GTNNAC	1 cut(s)	17
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	2 cut(s)	182, 287
HpyF3I	CTNAG	1 cut(s)	279
HpySE526I	ACGT	1 cut(s)	19
KpnI	GGTACC	1 cut(s)	228
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	1 cut(s)	85
LpnPI	CCDG	8 cut(s)	19, 21, 46, 65, 96, 108, 132, 239
Lsp1109I	GCAGC	3 cut(s)	67, 194, 199
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	3 cut(s)	59, 69, 132
MaeII	ACGT	1 cut(s)	19
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MboII	GAAGA	3 cut(s)	99, 202, 214
MluCI	AATT	1 cut(s)	323
MmeI	TCCRAC	1 cut(s)	353
MnlI	CCTC	2 cut(s)	139, 295
MseI	TTAA	3 cut(s)	41, 207, 233
MspR9I	CCNGG	2 cut(s)	9, 34
MvaI	CCWGG	2 cut(s)	9, 34
NdeII	GATC	1 cut(s)	85
NlaIV	GGNNCC	3 cut(s)	6, 115, 226
PfeI	GAWTC	2 cut(s)	104, 257
PflMI	CCANNNNNTGG	1 cut(s)	335
PkrI	GCNGC	3 cut(s)	57, 184, 214
Ppu21I	YACGTR	1 cut(s)	20
PpuMI	RGGWCCY	1 cut(s)	92
Psp5II	RGGWCCY	1 cut(s)	92
Psp6I	CCWGG	2 cut(s)	7, 32
PspFI	CCCAGC	1 cut(s)	118
PspGI	CCWGG	2 cut(s)	7, 32
PspN4I	GGNNCC	3 cut(s)	6, 115, 226
PspPI	GGNCC	2 cut(s)	4, 92
PspPPI	RGGWCCY	1 cut(s)	92
RsaI	GTAC	2 cut(s)	74, 226
RsaNI	GTAC	2 cut(s)	73, 225
SaqAI	TTAA	3 cut(s)	41, 207, 233
SatI	GCNGC	3 cut(s)	56, 183, 213
Sau3AI	GATC	1 cut(s)	85
Sau96I	GGNCC	2 cut(s)	4, 92
ScrFI	CCNGG	2 cut(s)	9, 34
SfaNI	GCATC	1 cut(s)	169
SinI	GGWCC	2 cut(s)	4, 92
SnaBI	TACGTA	1 cut(s)	20
Sse9I	AATT	1 cut(s)	323
SspMI	CTAG	3 cut(s)	59, 69, 132
StyD4I	CCNGG	2 cut(s)	7, 32
TaiI	ACGT	1 cut(s)	22
TasI	AATT	1 cut(s)	323
TfiI	GAWTC	2 cut(s)	104, 257
Tru1I	TTAA	3 cut(s)	41, 207, 233
Tru9I	TTAA	3 cut(s)	41, 207, 233
TseI	GCWGC	3 cut(s)	55, 182, 212
Van91I	CCANNNNNTGG	1 cut(s)	335
VpaK11BI	GGWCC	2 cut(s)	4, 92
XapI	RAATTY	1 cut(s)	323
XmiI	GTMKAC	1 cut(s)	16
XspI	CTAG	3 cut(s)	59, 69, 132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.