Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003855

Physical Location & Seq

Genomic Coordinates Forward (+)

9480308 .. 9482818

Gene Structure 2511 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G26940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGTGTATCTCAATCTCGCAAGTCTCTAGATTGAGAATCCATTCATTTGGAAGTTCTTGCTGTGAGCGTGTTCATGGATGGATCAAGAACAGCTCTAGCTTGAAGCTGCTTGATGTTAGAGCTTCTTCTGTTGATGGTAAAGCAAGATGGATCAGACGTAACGTGAGTACAACTACACAAGGTAGTAGAAGCAACACTAAGAGCAGTGTGTTGGGAGGAACAGTTCCTGTAACCAGGATTATAGATGAAGAGAGTAGAACCAAGGTACAGCCTTTTGGTAATCTTCAGCAACGGCTTGCGCAAGATAAAGATCTGTCTAAGCTCCTCACGGTTATAGTCTCTGATCTTGAGACAACTGGTTTGCATCGGAAAAATGAGCGGATAATTGAAATTGCAGCTCAGGATATAGCTGGTGGTGGGTACAGCACATTTCAGACTCTTGTCAACCCGGGTGTTGTTCCTATAACTAACGCACATATCCATGGAATCAGGAATGATATGGTCTGTCGACCCGAGGTTCCAAGGATGGAAGAGCTGATACCGATATTTCTGCGGTATGTTGAGAGTCGACAGAAGCCTGGAGGTTATGTGATGTTAGTTGCACACAACGGCAAATCATTTGACTTCCAGTTTTTGATCAACGAGTTTAACCGTTGTTCTTATGAGATTCCTCATAATTGGTTGTTACTCGACTCGCTCCCACTCGCTAGAGAGAACATGAAGTCTGTAGAGCCAACGGTTAAGCTAAGTTCATCGTTGGAAGCGCTTGCGGACTACTATAGTCTTACAAGGGAGGGTGATGCTCACAGAGCCTTGTCAGATGTGTTACTCTTATCTAAGGTGTTCCAGAAACTCACCATTGATCTCAAGCTCTCACTCTCTGATCTCGTCCTTCGCTGTCACACTGCATCTGATATCAGTGCTGCCATGGCCAAGAACAAGAAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000738 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006308 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009536 GO:0009987 GO:0016787 GO:0016788 GO:0019439 GO:0034641 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0071704 GO:0090304 GO:0090305 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

316

Amino Acids

35.25

Weight (kDa)

9.3

Isoelectric Point (pI)

39.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_T	PF00929	112 - 282	9.3e-20	Exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26940 AT5G26940 AT5G26940 AT5G26940
fragaria_vesca	FvH4_4g19220 FvH4_6g07110 FvH4_6g07110
malus_domestica	MD12G1208900.v1.1 MD12G1209000.v1.1 MD13G1159900.v1.1
prunus_persica	Prupe.1G126500_v2.0.a1 Prupe.1G126500_v2.0.a1 Prupe.6G316100_v2.0.a1 Prupe.6G316100_v2.0.a1 Prupe.6G316100_v2.0.a1
pyrus_communis	pycom12g19620 pycom13g13620
rosa_chinensis	RchiOBHm_Chr3g0456691 RchiOBHm_Chr4g0424201
rosa_laevigata	RLG00000007497 RLG00000025283
rosa_roxburghii	Rroxscaffold_11G00450390 Rroxscaffold_6G00422530
rosa_rugosa	Rorug03G0015100 Rorug04G0193700
rosa_samantha	Rh3AG075600 Rh3BG077500 Rh3CG077300 Rh3DG079200 Rh4AG251500 Rh4CG267500 Rh4DG251300
rosa_wichuraiana	Rw3G006480 Rw4G021690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	300
AccBSI	CCGCTC	1 cut(s)	379
AccI	GTMKAC	2 cut(s)	508, 568
AciI	CCGC	3 cut(s)	379, 553, 770
AclWI	GGATC	2 cut(s)	89, 158
AcoI	YGGCCR	1 cut(s)	930
AcuI	CTGAAG	1 cut(s)	269
AfaI	GTAC	3 cut(s)	169, 267, 422
AfeI	AGCGCT	1 cut(s)	765
AgsI	TTSAA	2 cut(s)	103, 389
AjnI	CCWGG	2 cut(s)	233, 577
AloI	GAACNNNNNNTCC	2 cut(s)	207, 239
Alw26I	GTCTC	3 cut(s)	28, 343, 344
AlwI	GGATC	2 cut(s)	89, 158
AlwNI	CAGNNNCTG	1 cut(s)	227
Ama87I	CYCGRG	2 cut(s)	448, 512
Aor51HI	AGCGCT	1 cut(s)	765
AoxI	GGCC	2 cut(s)	930, 945
ApeKI	GCWGC	3 cut(s)	106, 395, 923
ArsI	GACNNNNNNTTYG	2 cut(s)	343, 375
Asp700I	GAANNNNTTC	1 cut(s)	40
AspLEI	GCGC	2 cut(s)	301, 766
AsuC2I	CCSGG	2 cut(s)	449, 450
AsuHPI	GGTGA	2 cut(s)	809, 847
AvaI	CYCGRG	2 cut(s)	448, 512
BalI	TGGCCA	1 cut(s)	932
BarI	GAAGNNNNNNTAC	2 cut(s)	522, 554
BbvI	GCAGC	3 cut(s)	93, 407, 910
BccI	CCATC	4 cut(s)	72, 128, 141, 520
BceAI	ACGGC	2 cut(s)	308, 625
BcgI	CGANNNNNNTGC	2 cut(s)	532, 566
BciT130I	CCWGG	2 cut(s)	235, 579
BclI	TGATCA	1 cut(s)	636
BcnI	CCSGG	2 cut(s)	449, 450
BcoDI	GTCTC	3 cut(s)	28, 343, 344
BfaI	CTAG	3 cut(s)	27, 96, 708
BfmI	CTRYAG	2 cut(s)	726, 778
BfoI	RGCGCY	1 cut(s)	767
BglII	AGATCT	1 cut(s)	310
BisI	GCNGC	3 cut(s)	107, 396, 924
BlsI	GCNGC	3 cut(s)	108, 397, 925
Bme1390I	CCNGG	4 cut(s)	235, 449, 450, 579
BmeT110I	CYCGRG	2 cut(s)	448, 512
BmiI	GGNNCC	1 cut(s)	519
BmrFI	CCNGG	4 cut(s)	235, 449, 450, 579
BmsI	GCATC	3 cut(s)	373, 790, 917
BoxI	GACNNNNGTC	1 cut(s)	440
BpmI	CTGGAG	1 cut(s)	600
Bpu10I	CCTNAGC	1 cut(s)	399
BpuEI	CTTGAG	2 cut(s)	368, 851
BpuMI	CCSGG	2 cut(s)	449, 450
BsaBI	GATNNNNATC	1 cut(s)	309
BsaJI	CCNNGG	6 cut(s)	261, 448, 481, 513, 521, 927
BsaXI	ACNNNNNCTCC	4 cut(s)	207, 237, 573, 603
Bse1I	ACTGG	2 cut(s)	361, 628
Bse8I	GATNNNNATC	1 cut(s)	309
BseBI	CCWGG	2 cut(s)	235, 579
BseDI	CCNNGG	6 cut(s)	261, 448, 481, 513, 521, 927
BseGI	GGATG	2 cut(s)	83, 531
BseJI	GATNNNNATC	1 cut(s)	309
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	2 cut(s)	361, 628
BseRI	GAGGAG	1 cut(s)	314
BseXI	GCAGC	3 cut(s)	93, 407, 910
BshFI	GGCC	2 cut(s)	932, 947
BsiHKCI	CYCGRG	2 cut(s)	448, 512
BsiSI	CCGG	1 cut(s)	449
BsmAI	GTCTC	3 cut(s)	28, 343, 344
BsnI	GGCC	2 cut(s)	932, 947
BsoBI	CYCGRG	2 cut(s)	448, 512
Bsp143I	GATC	7 cut(s)	81, 150, 310, 343, 636, 862, 883
Bsp19I	CCATGG	2 cut(s)	481, 927
BspACI	CCGC	3 cut(s)	379, 553, 770
BspANI	GGCC	2 cut(s)	932, 947
BspCNI	CTCAG	1 cut(s)	412
BspLI	GGNNCC	1 cut(s)	519
BspPI	GGATC	2 cut(s)	89, 158
BspQI	GCTCTTC	1 cut(s)	525
BsrBI	CCGCTC	1 cut(s)	379
BsrI	ACTGG	2 cut(s)	361, 628
BssECI	CCNNGG	6 cut(s)	261, 448, 481, 513, 521, 927
BssMI	GATC	7 cut(s)	81, 150, 310, 343, 636, 862, 883
BssT1I	CCWWGG	4 cut(s)	261, 481, 521, 927
Bst2UI	CCWGG	2 cut(s)	235, 579
Bst4CI	ACNGT	4 cut(s)	223, 331, 653, 739
Bst6I	CTCTTC	2 cut(s)	243, 525
BstC8I	GCNNGC	2 cut(s)	297, 768
BstDEI	CTNAG	5 cut(s)	198, 318, 399, 746, 837
BstDSI	CCRYGG	2 cut(s)	481, 927
BstF5I	GGATG	2 cut(s)	83, 531
BstH2I	RGCGCY	1 cut(s)	767
BstHHI	GCGC	2 cut(s)	301, 766
BstKTI	GATC	7 cut(s)	84, 153, 313, 346, 639, 865, 886
BstMAI	GTCTC	3 cut(s)	28, 343, 344
BstMBI	GATC	7 cut(s)	81, 150, 310, 343, 636, 862, 883
BstMWI	GCNNNNNNNGC	2 cut(s)	809, 929
BstNI	CCWGG	2 cut(s)	235, 579
BstPAI	GACNNNNGTC	1 cut(s)	440
BstSCI	CCNGG	4 cut(s)	233, 447, 448, 577
BstSFI	CTRYAG	2 cut(s)	726, 778
BstV1I	GCAGC	3 cut(s)	93, 407, 910
BstX2I	RGATCY	1 cut(s)	310
BstXI	CCANNNNNNTGG	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	310
BsuRI	GGCC	2 cut(s)	932, 947
BtgI	CCRYGG	2 cut(s)	481, 927
BtsCI	GGATG	2 cut(s)	83, 531
BtsI	GCAGTG	2 cut(s)	211, 903
BtsIMutI	CAGTG	3 cut(s)	211, 903, 925
Cac8I	GCNNGC	2 cut(s)	297, 768
CaiI	CAGNNNCTG	1 cut(s)	227
CfoI	GCGC	2 cut(s)	301, 766
Cfr9I	CCCGGG	1 cut(s)	448
Csp6I	GTAC	3 cut(s)	168, 266, 421
CviAII	CATG	4 cut(s)	74, 482, 718, 928
CviQI	GTAC	3 cut(s)	168, 266, 421
DdeI	CTNAG	5 cut(s)	198, 318, 399, 746, 837
DpnI	GATC	7 cut(s)	83, 152, 312, 345, 638, 864, 885
DpnII	GATC	7 cut(s)	81, 150, 310, 343, 636, 862, 883
EaeI	YGGCCR	1 cut(s)	930
Eam1104I	CTCTTC	2 cut(s)	243, 525
EarI	CTCTTC	2 cut(s)	243, 525
Eco130I	CCWWGG	4 cut(s)	261, 481, 521, 927
Eco147I	AGGCCT	1 cut(s)	947
Eco32I	GATATC	1 cut(s)	916
Eco47III	AGCGCT	1 cut(s)	765
Eco57I	CTGAAG	1 cut(s)	269
Eco88I	CYCGRG	2 cut(s)	448, 512
EcoRII	CCWGG	2 cut(s)	233, 577
EcoRV	GATATC	1 cut(s)	916
EcoT14I	CCWWGG	4 cut(s)	261, 481, 521, 927
ErhI	CCWWGG	4 cut(s)	261, 481, 521, 927
FaeI	CATG	4 cut(s)	77, 485, 721, 931
FatI	CATG	4 cut(s)	73, 481, 717, 927
FbaI	TGATCA	1 cut(s)	636
FblI	GTMKAC	2 cut(s)	508, 568
Fnu4HI	GCNGC	3 cut(s)	107, 396, 924
FokI	GGATG	2 cut(s)	90, 538
Fsp4HI	GCNGC	3 cut(s)	107, 396, 924
FspBI	CTAG	3 cut(s)	27, 96, 708
FspI	TGCGCA	1 cut(s)	300
GlaI	GCGC	2 cut(s)	300, 765
GluI	GCNGC	3 cut(s)	107, 396, 924
GsuI	CTGGAG	1 cut(s)	600
HaeII	RGCGCY	1 cut(s)	767
HaeIII	GGCC	2 cut(s)	932, 947
HapII	CCGG	1 cut(s)	449
HhaI	GCGC	2 cut(s)	301, 766
Hin1II	CATG	4 cut(s)	77, 485, 721, 931
Hin6I	GCGC	2 cut(s)	299, 764
HinP1I	GCGC	2 cut(s)	299, 764
HincII	GTYRAC	3 cut(s)	445, 509, 569
HindII	GTYRAC	3 cut(s)	445, 509, 569
HinfI	GANTC	6 cut(s)	36, 436, 486, 565, 667, 692
HpaII	CCGG	1 cut(s)	449
HphI	GGTGA	2 cut(s)	809, 847
Hpy166II	GTNNAC	3 cut(s)	445, 509, 569
Hpy188I	TCNGA	7 cut(s)	155, 343, 369, 435, 820, 883, 913
Hpy188III	TCNNGA	6 cut(s)	27, 85, 347, 401, 490, 847
Hpy8I	GTNNAC	3 cut(s)	445, 509, 569
HpyAV	CCTTC	2 cut(s)	902, 937
HpyCH4III	ACNGT	4 cut(s)	223, 331, 653, 739
HpyCH4IV	ACGT	2 cut(s)	157, 162
HpyCH4V	TGCA	4 cut(s)	364, 395, 602, 908
HpyF10VI	GCNNNNNNNGC	2 cut(s)	809, 929
HpyF3I	CTNAG	5 cut(s)	198, 318, 399, 746, 837
HpySE526I	ACGT	2 cut(s)	157, 162
Hsp92II	CATG	4 cut(s)	77, 485, 721, 931
HspAI	GCGC	2 cut(s)	299, 764
Ksp22I	TGATCA	1 cut(s)	636
Kzo9I	GATC	7 cut(s)	81, 150, 310, 343, 636, 862, 883
LguI	GCTCTTC	1 cut(s)	525
LmnI	GCTCC	2 cut(s)	327, 702
Lsp1109I	GCAGC	3 cut(s)	93, 407, 910
LweI	GCATC	3 cut(s)	373, 790, 917
MaeI	CTAG	3 cut(s)	27, 96, 708
MaeII	ACGT	2 cut(s)	157, 162
MaeIII	GTNAC	5 cut(s)	158, 229, 684, 825, 899
MalI	GATC	7 cut(s)	83, 152, 312, 345, 638, 864, 885
MbiI	CCGCTC	1 cut(s)	379
MboI	GATC	7 cut(s)	81, 150, 310, 343, 636, 862, 883
MboII	GAAGA	4 cut(s)	117, 260, 275, 542
MflI	RGATCY	1 cut(s)	310
MlsI	TGGCCA	1 cut(s)	932
MluCI	AATT	3 cut(s)	384, 390, 676
MluNI	TGGCCA	1 cut(s)	932
MlyI	GAGTC	3 cut(s)	430, 574, 686
MmeI	TCCRAC	1 cut(s)	738
MnlI	CCTC	6 cut(s)	209, 335, 508, 575, 681, 787
Mox20I	TGGCCA	1 cut(s)	932
MroXI	GAANNNNTTC	1 cut(s)	40
MscI	TGGCCA	1 cut(s)	932
MseI	TTAA	2 cut(s)	648, 741
MslI	CAYNNNNRTG	1 cut(s)	480
Msp20I	TGGCCA	1 cut(s)	932
MspI	CCGG	1 cut(s)	449
MspR9I	CCNGG	4 cut(s)	235, 449, 450, 579
MvaI	CCWGG	2 cut(s)	235, 579
MwoI	GCNNNNNNNGC	2 cut(s)	809, 929
NciI	CCSGG	2 cut(s)	449, 450
NcoI	CCATGG	2 cut(s)	481, 927
NdeII	GATC	7 cut(s)	81, 150, 310, 343, 636, 862, 883
NlaIII	CATG	4 cut(s)	77, 485, 721, 931
NlaIV	GGNNCC	1 cut(s)	519
NmuCI	GTSAC	1 cut(s)	899
NsbI	TGCGCA	1 cut(s)	300
PceI	AGGCCT	1 cut(s)	947
PciSI	GCTCTTC	1 cut(s)	525
PdmI	GAANNNNTTC	1 cut(s)	40
PfeI	GAWTC	3 cut(s)	36, 486, 667
PkrI	GCNGC	3 cut(s)	108, 397, 925
PleI	GAGTC	3 cut(s)	430, 573, 686
PpsI	GAGTC	3 cut(s)	430, 573, 686
PshAI	GACNNNNGTC	1 cut(s)	440
Psp6I	CCWGG	2 cut(s)	233, 577
PspGI	CCWGG	2 cut(s)	233, 577
PspN4I	GGNNCC	1 cut(s)	519
PstNI	CAGNNNCTG	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	310
RsaI	GTAC	3 cut(s)	169, 267, 422
RsaNI	GTAC	3 cut(s)	168, 266, 421
RseI	CAYNNNNRTG	1 cut(s)	480
SalI	GTCGAC	2 cut(s)	507, 567
SapI	GCTCTTC	1 cut(s)	525
SaqAI	TTAA	2 cut(s)	648, 741
SatI	GCNGC	3 cut(s)	107, 396, 924
Sau3AI	GATC	7 cut(s)	81, 150, 310, 343, 636, 862, 883
SchI	GAGTC	3 cut(s)	430, 574, 686
ScrFI	CCNGG	4 cut(s)	235, 449, 450, 579
SfaNI	GCATC	3 cut(s)	373, 790, 917
SfcI	CTRYAG	2 cut(s)	726, 778
SmaI	CCCGGG	1 cut(s)	450
SmiMI	CAYNNNNRTG	1 cut(s)	480
SmlI	CTYRAG	2 cut(s)	347, 866
SmoI	CTYRAG	2 cut(s)	347, 866
Sse9I	AATT	3 cut(s)	384, 390, 676
SseBI	AGGCCT	1 cut(s)	947
SsiI	CCGC	3 cut(s)	379, 553, 770
SspMI	CTAG	3 cut(s)	27, 96, 708
StuI	AGGCCT	1 cut(s)	947
StyD4I	CCNGG	4 cut(s)	233, 447, 448, 577
StyI	CCWWGG	4 cut(s)	261, 481, 521, 927
TaaI	ACNGT	4 cut(s)	223, 331, 653, 739
TaiI	ACGT	2 cut(s)	160, 165
TaqI	TCGA	3 cut(s)	508, 568, 690
TasI	AATT	3 cut(s)	384, 390, 676
TatI	WGTACW	1 cut(s)	167
TfiI	GAWTC	3 cut(s)	36, 486, 667
Tru1I	TTAA	2 cut(s)	648, 741
Tru9I	TTAA	2 cut(s)	648, 741
TscAI	CASTG	3 cut(s)	211, 910, 925
TseFI	GTSAC	1 cut(s)	899
TseI	GCWGC	3 cut(s)	106, 395, 923
Tsp45I	GTSAC	1 cut(s)	899
TspDTI	ATGAA	5 cut(s)	33, 62, 261, 734, 741
TspMI	CCCGGG	1 cut(s)	448
TspRI	CASTG	3 cut(s)	211, 910, 925
XbaI	TCTAGA	1 cut(s)	26
XmaI	CCCGGG	1 cut(s)	448
XmiI	GTMKAC	2 cut(s)	508, 568
XmnI	GAANNNNTTC	1 cut(s)	40
XspI	CTAG	3 cut(s)	27, 96, 708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.