Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003855

Physical Location & Seq

Genomic Coordinates Forward (+)

28151939 .. 28155819

Gene Structure 3881 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G316100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGAGAACAGTTTCAATGTGCTTCTCTTCTTTTTCGCAAGTTCCCAGATGCAGAATTTATAACTTAGCTCATTTTTGGAGTGAACGTTTCCACAATTTGAGTAGGACTTGTGGATACAATTCTAGCTCTAAGCTATATGATTCCAAAATTTATGTGCTTGATGGAGGAAACAGTAGGAAATGGACTAGAAGATCTGTAACTACAAACACACAAGGAAGAAACAAAAGTGGCCAGTGCAGTGATCCCAGAAAACTTAGGCAAGAAATTTTGGATGTAACGGTTTCAACAAGTGCTACTCTAAATTTAAATAAAATTGAAACAAGTCAATACCAACAGATTCAACACGTTGACATTCGACAATTGATTGCTCAGAATAAAGATTTAGCCAGCCTAGTGACAGTTATTGCTTTTGATACTGAGACTACTGGGTTTAGCAGAGAGAGAGATCATATAATAGAGATTGCACTTCAAGATCTTCAAGGGGGTGAAAACAGTGCTTTCCAGACATTGGTAAACCCTGAACGCAGAGTTCTAAATTCACACATTCATGGAATTACAACAAATATGGTCAACAGACCTGATGTTCCGAGGATGGAGGACCTAATACCAATCTTACTCAAGTATGTCAAAAGCCGTCAAAAACCAGGAGGCTGTGTGTTGTTTGTTGCTCACAATGCTCGTACTTTTGATGTACCCTTTCTTTGTAATGCATTCCGGCGTTGTGGTGTAGATATTCCTTCAGATTGGCTATTTAAGGATACCCTTCCTATGGGACGTGAAGCAATGAAGTCTGAAGGATCAAAGCCTTCTTCAAGAAGCATATCATTGCAAGCCCTTCGTGAGCACCTTGGGATTCCATTGGATGGTTCGGCTCACAGAGCCATGTCAGACGTGAAGGTGCTGGCAGCAGTTTTTCAAAGGTTGACTTATATGCTGAAACTCCCGCTTGCTAGCCTTGTTGAAGATGCTTTCACAGCCTCAGAAATTGGCACTCCAAAGAAGAAGAGTTCCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000738 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006308 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009536 GO:0009987 GO:0016787 GO:0016788 GO:0019439 GO:0034641 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0071704 GO:0090304 GO:0090305 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

339

Amino Acids

38.12

Weight (kDa)

9.61

Isoelectric Point (pI)

46.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26940 AT5G26940 AT5G26940 AT5G26940
fragaria_vesca	FvH4_4g19220 FvH4_6g07110 FvH4_6g07110
malus_domestica	MD12G1208900.v1.1 MD12G1209000.v1.1 MD13G1159900.v1.1
prunus_persica	Prupe.1G126500_v2.0.a1 Prupe.1G126500_v2.0.a1 Prupe.6G316100_v2.0.a1 Prupe.6G316100_v2.0.a1 Prupe.6G316100_v2.0.a1
pyrus_communis	pycom12g19620 pycom13g13620
rosa_chinensis	RchiOBHm_Chr3g0456691 RchiOBHm_Chr4g0424201
rosa_laevigata	RLG00000007497 RLG00000025283
rosa_roxburghii	Rroxscaffold_11G00450390 Rroxscaffold_6G00422530
rosa_rugosa	Rorug03G0015100 Rorug04G0193700
rosa_samantha	Rh3AG075600 Rh3BG077500 Rh3CG077300 Rh3DG079200 Rh4AG251500 Rh4CG267500 Rh4DG251300
rosa_wichuraiana	Rw3G006480 Rw4G021690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	60
AccB7I	CCANNNNNTGG	2 cut(s)	508, 863
AciI	CCGC	1 cut(s)	944
AclI	AACGTT	1 cut(s)	85
AclWI	GGATC	2 cut(s)	236, 805
AcoI	YGGCCR	1 cut(s)	229
AcsI	RAATTY	5 cut(s)	54, 147, 264, 301, 535
AcuI	CTGAAG	2 cut(s)	723, 813
AfaI	GTAC	2 cut(s)	682, 693
AfiI	CCNNNNNNNGG	3 cut(s)	508, 769, 863
AflIII	ACRYGT	1 cut(s)	343
AgsI	TTSAA	9 cut(s)	15, 285, 317, 341, 470, 479, 813, 917, 962
AjiI	CACGTC	2 cut(s)	776, 892
AjnI	CCWGG	1 cut(s)	643
AluBI	AGCT	3 cut(s)	68, 126, 133
AluI	AGCT	3 cut(s)	68, 126, 133
Alw21I	GWGCWC	1 cut(s)	846
Alw26I	GTCTC	1 cut(s)	413
AlwI	GGATC	2 cut(s)	236, 805
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	1 cut(s)	905
ApoI	RAATTY	5 cut(s)	54, 147, 264, 301, 535
Asp700I	GAANNNNTTC	1 cut(s)	10
AspS9I	GGNCC	1 cut(s)	598
AsuHPI	GGTGA	1 cut(s)	497
AsuNHI	GCTAGC	1 cut(s)	950
AvaII	GGWCC	1 cut(s)	598
BalI	TGGCCA	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	846
BbvI	GCAGC	1 cut(s)	917
BccI	CCATC	3 cut(s)	155, 586, 857
BceAI	ACGGC	1 cut(s)	618
BcgI	CGANNNNNNTGC	2 cut(s)	818, 852
BciT130I	CCWGG	1 cut(s)	645
BciVI	GTATCC	2 cut(s)	107, 751
BcoDI	GTCTC	1 cut(s)	413
BfaI	CTAG	4 cut(s)	123, 186, 392, 951
BfuI	GTATCC	2 cut(s)	107, 751
BglII	AGATCT	2 cut(s)	191, 472
BisI	GCNGC	1 cut(s)	906
BlsI	GCNGC	1 cut(s)	907
Bme1390I	CCNGG	1 cut(s)	645
Bme18I	GGWCC	1 cut(s)	598
BmgBI	CACGTC	2 cut(s)	776, 892
BmgT120I	GGNCC	1 cut(s)	598
BmrFI	CCNGG	1 cut(s)	645
BmrI	ACTGGG	1 cut(s)	435
BmsI	GCATC	2 cut(s)	38, 955
BmtI	GCTAGC	1 cut(s)	954
BmuI	ACTGGG	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	602
BsaJI	CCNNGG	2 cut(s)	587, 847
BsaXI	ACNNNNNCTCC	4 cut(s)	70, 100, 639, 669
Bsc4I	CCNNNNNNNGG	3 cut(s)	508, 769, 863
Bse1I	ACTGG	2 cut(s)	232, 430
Bse3DI	GCAATG	2 cut(s)	789, 824
BseBI	CCWGG	1 cut(s)	645
BseDI	CCNNGG	2 cut(s)	587, 847
BseGI	GGATG	3 cut(s)	277, 597, 868
BseLI	CCNNNNNNNGG	3 cut(s)	508, 769, 863
BseMI	GCAATG	2 cut(s)	789, 824
BseMII	CTCAG	3 cut(s)	383, 408, 993
BseNI	ACTGG	2 cut(s)	232, 430
BseXI	GCAGC	1 cut(s)	917
BsgI	GTGCAG	1 cut(s)	256
BshFI	GGCC	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	846
BsiSI	CCGG	1 cut(s)	715
BslFI	GGGAC	1 cut(s)	786
BslI	CCNNNNNNNGG	3 cut(s)	508, 769, 863
BsmAI	GTCTC	1 cut(s)	413
BsmFI	GGGAC	1 cut(s)	786
BsmI	GAATGC	1 cut(s)	710
BsnI	GGCC	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	846
Bsp143I	GATC	5 cut(s)	191, 241, 445, 472, 797
BspACI	CCGC	1 cut(s)	944
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	3 cut(s)	382, 409, 992
BspOI	GCTAGC	1 cut(s)	954
BspPI	GGATC	2 cut(s)	236, 805
BsrDI	GCAATG	2 cut(s)	789, 824
BsrI	ACTGG	2 cut(s)	232, 430
BssECI	CCNNGG	2 cut(s)	587, 847
BssMI	GATC	5 cut(s)	191, 241, 445, 472, 797
BssT1I	CCWWGG	1 cut(s)	847
Bst2UI	CCWGG	1 cut(s)	645
Bst4CI	ACNGT	5 cut(s)	10, 173, 280, 400, 494
Bst6I	CTCTTC	2 cut(s)	31, 998
BstC8I	GCNNGC	5 cut(s)	388, 831, 903, 948, 952
BstDEI	CTNAG	6 cut(s)	64, 129, 254, 369, 417, 979
BstF5I	GGATG	3 cut(s)	277, 597, 868
BstKTI	GATC	5 cut(s)	194, 244, 448, 475, 800
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	5 cut(s)	191, 241, 445, 472, 797
BstMWI	GCNNNNNNNGC	3 cut(s)	674, 878, 974
BstNI	CCWGG	1 cut(s)	645
BstSCI	CCNGG	1 cut(s)	643
BstV1I	GCAGC	1 cut(s)	917
BstX2I	RGATCY	2 cut(s)	191, 472
BstYI	RGATCY	2 cut(s)	191, 472
BsuI	GTATCC	2 cut(s)	107, 751
BsuRI	GGCC	1 cut(s)	231
BtrI	CACGTC	2 cut(s)	776, 892
BtsCI	GGATG	3 cut(s)	277, 597, 868
BtsI	GCAGTG	1 cut(s)	244
BtsIMutI	CAGTG	3 cut(s)	239, 244, 499
Cac8I	GCNNGC	5 cut(s)	388, 831, 903, 948, 952
Cfr13I	GGNCC	1 cut(s)	598
Csp6I	GTAC	2 cut(s)	681, 692
CviAII	CATG	2 cut(s)	548, 883
CviQI	GTAC	2 cut(s)	681, 692
DdeI	CTNAG	6 cut(s)	64, 129, 254, 369, 417, 979
DpnI	GATC	5 cut(s)	193, 243, 447, 474, 799
DpnII	GATC	5 cut(s)	191, 241, 445, 472, 797
DraI	TTTAAA	1 cut(s)	306
EaeI	YGGCCR	1 cut(s)	229
Eam1104I	CTCTTC	2 cut(s)	31, 998
EarI	CTCTTC	2 cut(s)	31, 998
Eco130I	CCWWGG	1 cut(s)	847
Eco47I	GGWCC	1 cut(s)	598
Eco57I	CTGAAG	2 cut(s)	723, 813
EcoO109I	RGGNCCY	1 cut(s)	598
EcoRII	CCWGG	1 cut(s)	643
EcoT14I	CCWWGG	1 cut(s)	847
EcoT22I	ATGCAT	1 cut(s)	712
ErhI	CCWWGG	1 cut(s)	847
FaeI	CATG	2 cut(s)	551, 886
FalI	AAGNNNNNCTT	2 cut(s)	910, 942
FaqI	GGGAC	1 cut(s)	786
FatI	CATG	2 cut(s)	547, 882
FauI	CCCGC	1 cut(s)	951
Fnu4HI	GCNGC	1 cut(s)	906
FokI	GGATG	3 cut(s)	284, 604, 875
Fsp4HI	GCNGC	1 cut(s)	906
FspBI	CTAG	4 cut(s)	123, 186, 392, 951
GluI	GCNGC	1 cut(s)	906
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	1 cut(s)	715
Hin1II	CATG	2 cut(s)	551, 886
HincII	GTYRAC	3 cut(s)	349, 571, 924
HindII	GTYRAC	3 cut(s)	349, 571, 924
HinfI	GANTC	3 cut(s)	140, 337, 853
HpaII	CCGG	1 cut(s)	715
HphI	GGTGA	1 cut(s)	497
Hpy166II	GTNNAC	5 cut(s)	83, 349, 514, 571, 924
Hpy188I	TCNGA	6 cut(s)	372, 588, 742, 793, 889, 982
Hpy188III	TCNNGA	5 cut(s)	470, 502, 813, 839, 1011
Hpy8I	GTNNAC	5 cut(s)	83, 349, 514, 571, 924
HpyAV	CCTTC	6 cut(s)	747, 773, 788, 816, 845, 889
HpyCH4III	ACNGT	5 cut(s)	10, 173, 280, 400, 494
HpyCH4IV	ACGT	4 cut(s)	85, 345, 775, 891
HpyCH4V	TGCA	5 cut(s)	51, 237, 464, 710, 829
HpyF10VI	GCNNNNNNNGC	3 cut(s)	674, 878, 974
HpyF3I	CTNAG	6 cut(s)	64, 129, 254, 369, 417, 979
HpySE526I	ACGT	4 cut(s)	85, 345, 775, 891
Hsp92II	CATG	2 cut(s)	551, 886
Kzo9I	GATC	5 cut(s)	191, 241, 445, 472, 797
Lsp1109I	GCAGC	1 cut(s)	917
LweI	GCATC	2 cut(s)	38, 955
MaeI	CTAG	4 cut(s)	123, 186, 392, 951
MaeII	ACGT	4 cut(s)	85, 345, 775, 891
MaeIII	GTNAC	3 cut(s)	196, 274, 394
MalI	GATC	5 cut(s)	193, 243, 447, 474, 799
MboI	GATC	5 cut(s)	191, 241, 445, 472, 797
MboII	GAAGA	8 cut(s)	18, 201, 228, 467, 801, 974, 1012, 1015
MfeI	CAATTG	1 cut(s)	359
MflI	RGATCY	2 cut(s)	191, 472
MhlI	GDGCHC	1 cut(s)	846
MlsI	TGGCCA	1 cut(s)	231
MluNI	TGGCCA	1 cut(s)	231
MnlI	CCTC	5 cut(s)	158, 582, 589, 641, 988
Mox20I	TGGCCA	1 cut(s)	231
Mph1103I	ATGCAT	1 cut(s)	712
MroXI	GAANNNNTTC	1 cut(s)	10
MscI	TGGCCA	1 cut(s)	231
MseI	TTAA	2 cut(s)	305, 753
MslI	CAYNNNNRTG	1 cut(s)	546
Msp20I	TGGCCA	1 cut(s)	231
MspI	CCGG	1 cut(s)	715
MspR9I	CCNGG	1 cut(s)	645
MunI	CAATTG	1 cut(s)	359
Mva1269I	GAATGC	1 cut(s)	710
MvaI	CCWGG	1 cut(s)	645
MwoI	GCNNNNNNNGC	3 cut(s)	674, 878, 974
NdeII	GATC	5 cut(s)	191, 241, 445, 472, 797
NheI	GCTAGC	1 cut(s)	950
NlaIII	CATG	2 cut(s)	551, 886
NmuCI	GTSAC	1 cut(s)	394
NsiI	ATGCAT	1 cut(s)	712
PctI	GAATGC	1 cut(s)	710
PdmI	GAANNNNTTC	1 cut(s)	10
PfeI	GAWTC	3 cut(s)	140, 337, 853
PflMI	CCANNNNNTGG	2 cut(s)	508, 863
PkrI	GCNGC	1 cut(s)	907
PpuMI	RGGWCCY	1 cut(s)	598
PsiI	TTATAA	1 cut(s)	60
Psp1406I	AACGTT	1 cut(s)	85
Psp5II	RGGWCCY	1 cut(s)	598
Psp6I	CCWGG	1 cut(s)	643
PspGI	CCWGG	1 cut(s)	643
PspPI	GGNCC	1 cut(s)	598
PspPPI	RGGWCCY	1 cut(s)	598
PsuI	RGATCY	2 cut(s)	191, 472
RsaI	GTAC	2 cut(s)	682, 693
RsaNI	GTAC	2 cut(s)	681, 692
RseI	CAYNNNNRTG	1 cut(s)	546
SaqAI	TTAA	2 cut(s)	305, 753
SatI	GCNGC	1 cut(s)	906
Sau3AI	GATC	5 cut(s)	191, 241, 445, 472, 797
Sau96I	GGNCC	1 cut(s)	598
ScrFI	CCNGG	1 cut(s)	645
SduI	GDGCHC	1 cut(s)	846
SfaNI	GCATC	2 cut(s)	38, 955
SinI	GGWCC	1 cut(s)	598
SmiI	ATTTAAAT	1 cut(s)	306
SmiMI	CAYNNNNRTG	1 cut(s)	546
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
SsiI	CCGC	1 cut(s)	944
SspMI	CTAG	4 cut(s)	123, 186, 392, 951
StyD4I	CCNGG	1 cut(s)	643
StyI	CCWWGG	1 cut(s)	847
SwaI	ATTTAAAT	1 cut(s)	306
TaaI	ACNGT	5 cut(s)	10, 173, 280, 400, 494
TaiI	ACGT	4 cut(s)	88, 348, 778, 894
TaqI	TCGA	1 cut(s)	355
TfiI	GAWTC	3 cut(s)	140, 337, 853
Tru1I	TTAA	2 cut(s)	305, 753
Tru9I	TTAA	2 cut(s)	305, 753
TscAI	CASTG	3 cut(s)	239, 244, 499
TseFI	GTSAC	1 cut(s)	394
TseI	GCWGC	1 cut(s)	905
Tsp45I	GTSAC	1 cut(s)	394
TspDTI	ATGAA	2 cut(s)	536, 800
TspRI	CASTG	3 cut(s)	239, 244, 499
Van91I	CCANNNNNTGG	2 cut(s)	508, 863
VpaK11BI	GGWCC	1 cut(s)	598
XapI	RAATTY	5 cut(s)	54, 147, 264, 301, 535
XmnI	GAANNNNTTC	1 cut(s)	10
XspI	CTAG	4 cut(s)	123, 186, 392, 951
Zsp2I	ATGCAT	1 cut(s)	712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.