Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003855

Physical Location & Seq

Genomic Coordinates Reverse (-)

4284308 .. 4287655

Gene Structure 3348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g07110.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGAGAACCTTTTCTTTATCAAGAGTTCCCAGATGTGGGCTTTTTAACTTGGCTCAATTTTGGGGTGACAACTTCCACAGTTCGAGTAGGACTTGTGGATACAGTTGTAATTCTAAGCTGCATAGCTTCAAAATTTATGCCCTTGATGGAGGAAACAGTAGGAAATGGACTAGAAGGCCTCTAACAACAAATACAGAAGGCAGAAACAAAACTGCCCAGCACAGTAGTCCCAGCACGATTAGGCATGAATTGTTGAATGTAACAGCTTCAACAAGTGCTACAATAAATATAAGTAAAGTCGACACAAGTCAATATGAAAAGATTCAACATCATGACATTCGAGAACTGATTGCTGAGAATGGAGATTTAGCCAGTCTAGTGACAGTTATTATATTTGATATTGAGACTACTGGGTTTAGTAGAACAGATGATCGAATCATAGAAATTGCACTTCAAGATCTTCAAGGTGGTGAAAACAGTACTTTCCAGACACTGATAAACCCCGAACGTGATGTCCCCTGGAATACAACCAAAATTCATGGAATTGCTACAGATATGGTCAGAAAACCTAGTGTTCCAAGGATGAAGGAACTTATACCAATCTTACTCAGCTATATCAAAAGCCGTCAAAAGCCGGGCGGTTATGTAATGTTGGTTGCTCACAATGGTCGTAGTTTTGATGTGCCCTTTCTCCGTAGTGAGTTCTCTCGTTGTGGCGTAGAGTTTCCTTCAAACTGGCTGTTCGCAGACAGCCTTATTATGGCACGGAAAGCAATGAAGTCTGCAGGATCAGAAGCTTCTTCAAAATCATTAAAATTGCAAGACCTTCGTGTGCACCTTGGGATCCCATTGGTTGGTTCAGCTCACAGAGCCATGTCAGATGTGGTAGTATTGTCAAAAGTGTTTCCAATGTTAACTTATATTCTGAAACAGACACTTGCCAACGTCGTGGTTGAACATTCTTTCTCTCTTTCGGACATTGACAACCCGAAGAAGAAGAAGAGTTCTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000738 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006308 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009536 GO:0009987 GO:0016787 GO:0016788 GO:0019439 GO:0034641 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0071704 GO:0090304 GO:0090305 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

338

Amino Acids

37.74

Weight (kDa)

9.67

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_T	PF00929	130 - 302	4e-24	Exonuclease
RNase_H_2	PF13482	131 - 252	4.9e-06	RNase_H superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26940 AT5G26940 AT5G26940 AT5G26940
fragaria_vesca	FvH4_4g19220 FvH4_6g07110 FvH4_6g07110
malus_domestica	MD12G1208900.v1.1 MD12G1209000.v1.1 MD13G1159900.v1.1
prunus_persica	Prupe.1G126500_v2.0.a1 Prupe.1G126500_v2.0.a1 Prupe.6G316100_v2.0.a1 Prupe.6G316100_v2.0.a1 Prupe.6G316100_v2.0.a1
pyrus_communis	pycom12g19620 pycom13g13620
rosa_chinensis	RchiOBHm_Chr3g0456691 RchiOBHm_Chr4g0424201
rosa_laevigata	RLG00000007497 RLG00000025283
rosa_roxburghii	Rroxscaffold_11G00450390 Rroxscaffold_6G00422530
rosa_rugosa	Rorug03G0015100 Rorug04G0193700
rosa_samantha	Rh3AG075600 Rh3BG077500 Rh3CG077300 Rh3DG079200 Rh4AG251500 Rh4CG267500 Rh4DG251300
rosa_wichuraiana	Rw3G006480 Rw4G021690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	854
AccI	GTMKAC	1 cut(s)	300
AciI	CCGC	1 cut(s)	639
AclWI	GGATC	3 cut(s)	796, 838, 851
AcsI	RAATTY	2 cut(s)	132, 534
AfaI	GTAC	1 cut(s)	481
AfiI	CCNNNNNNNGG	4 cut(s)	35, 36, 760, 854
AgsI	TTSAA	9 cut(s)	130, 256, 270, 326, 455, 464, 732, 804, 956
AjnI	CCWGG	1 cut(s)	518
AloI	GAACNNNNNNTCC	2 cut(s)	498, 530
AluBI	AGCT	6 cut(s)	118, 126, 266, 612, 797, 863
AluI	AGCT	6 cut(s)	118, 126, 266, 612, 797, 863
Alw21I	GWGCWC	1 cut(s)	837
Alw26I	GTCTC	1 cut(s)	398
Alw44I	GTGCAC	1 cut(s)	833
AlwI	GGATC	3 cut(s)	796, 838, 851
AlwNI	CAGNNNCTG	1 cut(s)	493
AoxI	GGCC	1 cut(s)	176
ApaLI	GTGCAC	1 cut(s)	833
ApeKI	GCWGC	1 cut(s)	118
ApoI	RAATTY	2 cut(s)	132, 534
ArsI	GACNNNNNNTTYG	2 cut(s)	498, 530
Asp700I	GAANNNNTTC	2 cut(s)	10, 321
AsuC2I	CCSGG	1 cut(s)	636
AsuHPI	GGTGA	2 cut(s)	77, 482
BaeGI	GKGCMC	2 cut(s)	687, 837
BaeI	ACNNNNGTAYC	2 cut(s)	91, 124
BamHI	GGATCC	1 cut(s)	843
Bbv12I	GWGCWC	1 cut(s)	837
BbvI	GCAGC	1 cut(s)	105
BccI	CCATC	1 cut(s)	140
BceAI	ACGGC	1 cut(s)	609
BcgI	CGANNNNNNTGC	2 cut(s)	809, 843
BciT130I	CCWGG	1 cut(s)	520
BciVI	GTATCC	1 cut(s)	92
BcnI	CCSGG	1 cut(s)	636
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	4 cut(s)	171, 377, 570, 1008
BfmI	CTRYAG	2 cut(s)	549, 783
BfuI	GTATCC	1 cut(s)	92
BglII	AGATCT	1 cut(s)	457
BisI	GCNGC	1 cut(s)	119
BlsI	GCNGC	1 cut(s)	120
BmcAI	AGTACT	1 cut(s)	481
Bme1390I	CCNGG	2 cut(s)	520, 636
BmiI	GGNNCC	1 cut(s)	845
BmrFI	CCNGG	2 cut(s)	520, 636
BmrI	ACTGGG	1 cut(s)	420
BmuI	ACTGGG	1 cut(s)	420
BoxI	GACNNNNGTC	1 cut(s)	306
BpuMI	CCSGG	1 cut(s)	636
BsaJI	CCNNGG	3 cut(s)	518, 578, 838
Bsc4I	CCNNNNNNNGG	4 cut(s)	35, 36, 760, 854
Bse1I	ACTGG	3 cut(s)	372, 415, 740
Bse3DI	GCAATG	1 cut(s)	780
BseBI	CCWGG	1 cut(s)	520
BseDI	CCNNGG	3 cut(s)	518, 578, 838
BseGI	GGATG	1 cut(s)	588
BseLI	CCNNNNNNNGG	4 cut(s)	35, 36, 760, 854
BseMI	GCAATG	1 cut(s)	780
BseMII	CTCAG	2 cut(s)	345, 622
BseNI	ACTGG	3 cut(s)	372, 415, 740
BseSI	GKGCMC	2 cut(s)	687, 837
BseXI	GCAGC	1 cut(s)	105
BseYI	CCCAGC	2 cut(s)	216, 230
BshFI	GGCC	1 cut(s)	178
BsiHKAI	GWGCWC	1 cut(s)	837
BsiSI	CCGG	1 cut(s)	635
BslFI	GGGAC	2 cut(s)	213, 500
BslI	CCNNNNNNNGG	4 cut(s)	35, 36, 760, 854
BsmAI	GTCTC	1 cut(s)	398
BsmFI	GGGAC	2 cut(s)	213, 500
BsnI	GGCC	1 cut(s)	178
Bsp1286I	GDGCHC	2 cut(s)	687, 837
Bsp143I	GATC	4 cut(s)	430, 457, 788, 843
BspACI	CCGC	1 cut(s)	639
BspANI	GGCC	1 cut(s)	178
BspCNI	CTCAG	2 cut(s)	346, 621
BspHI	TCATGA	1 cut(s)	331
BspLI	GGNNCC	1 cut(s)	845
BspMAI	CTGCAG	1 cut(s)	787
BspPI	GGATC	3 cut(s)	796, 838, 851
BsrDI	GCAATG	1 cut(s)	780
BsrI	ACTGG	3 cut(s)	372, 415, 740
BssECI	CCNNGG	3 cut(s)	518, 578, 838
BssMI	GATC	4 cut(s)	430, 457, 788, 843
BssT1I	CCWWGG	2 cut(s)	578, 838
Bst2UI	CCWGG	1 cut(s)	520
Bst4CI	ACNGT	6 cut(s)	80, 104, 158, 224, 385, 479
Bst6I	CTCTTC	1 cut(s)	995
BstDEI	CTNAG	3 cut(s)	114, 354, 608
BstF5I	GGATG	1 cut(s)	588
BstKTI	GATC	4 cut(s)	433, 460, 791, 846
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	4 cut(s)	430, 457, 788, 843
BstMWI	GCNNNNNNNGC	2 cut(s)	770, 869
BstNI	CCWGG	1 cut(s)	520
BstPAI	GACNNNNGTC	1 cut(s)	306
BstSCI	CCNGG	2 cut(s)	518, 634
BstSFI	CTRYAG	2 cut(s)	549, 783
BstSLI	GKGCMC	2 cut(s)	687, 837
BstV1I	GCAGC	1 cut(s)	105
BstX2I	RGATCY	2 cut(s)	457, 843
BstXI	CCANNNNNNTGG	1 cut(s)	949
BstYI	RGATCY	2 cut(s)	457, 843
BsuI	GTATCC	1 cut(s)	92
BsuRI	GGCC	1 cut(s)	178
BtsCI	GGATG	1 cut(s)	588
BtsIMutI	CAGTG	1 cut(s)	491
CaiI	CAGNNNCTG	1 cut(s)	493
CciI	TCATGA	1 cut(s)	331
Csp6I	GTAC	1 cut(s)	480
CviAII	CATG	4 cut(s)	245, 332, 539, 874
CviQI	GTAC	1 cut(s)	480
DdeI	CTNAG	3 cut(s)	114, 354, 608
DpnI	GATC	4 cut(s)	432, 459, 790, 845
DpnII	GATC	4 cut(s)	430, 457, 788, 843
Eam1104I	CTCTTC	1 cut(s)	995
EarI	CTCTTC	1 cut(s)	995
Eco130I	CCWWGG	2 cut(s)	578, 838
Eco147I	AGGCCT	1 cut(s)	178
EcoRII	CCWGG	1 cut(s)	518
EcoT14I	CCWWGG	2 cut(s)	578, 838
ErhI	CCWWGG	2 cut(s)	578, 838
FaeI	CATG	4 cut(s)	248, 335, 542, 877
FaqI	GGGAC	2 cut(s)	213, 500
FatI	CATG	4 cut(s)	244, 331, 538, 873
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	1 cut(s)	119
FokI	GGATG	1 cut(s)	595
Fsp4HI	GCNGC	1 cut(s)	119
FspBI	CTAG	4 cut(s)	171, 377, 570, 1008
GluI	GCNGC	1 cut(s)	119
GsaI	CCCAGC	2 cut(s)	220, 234
HaeIII	GGCC	1 cut(s)	178
HapII	CCGG	1 cut(s)	635
Hin1II	CATG	4 cut(s)	248, 335, 542, 877
HincII	GTYRAC	2 cut(s)	301, 915
HindII	GTYRAC	2 cut(s)	301, 915
HindIII	AAGCTT	1 cut(s)	795
HinfI	GANTC	2 cut(s)	322, 435
HpaI	GTTAAC	1 cut(s)	915
HpaII	CCGG	1 cut(s)	635
HphI	GGTGA	2 cut(s)	77, 482
Hpy166II	GTNNAC	3 cut(s)	301, 835, 915
Hpy188I	TCNGA	5 cut(s)	563, 793, 880, 927, 976
Hpy188III	TCNNGA	5 cut(s)	21, 332, 341, 455, 487
Hpy8I	GTNNAC	3 cut(s)	301, 835, 915
Hpy99I	CGWCG	1 cut(s)	950
HpyAV	CCTTC	5 cut(s)	168, 191, 580, 738, 836
HpyCH4III	ACNGT	6 cut(s)	80, 104, 158, 224, 385, 479
HpyCH4IV	ACGT	2 cut(s)	508, 945
HpyCH4V	TGCA	5 cut(s)	121, 449, 785, 820, 835
HpyF10VI	GCNNNNNNNGC	2 cut(s)	770, 869
HpyF3I	CTNAG	3 cut(s)	114, 354, 608
HpySE526I	ACGT	2 cut(s)	508, 945
Hsp92II	CATG	4 cut(s)	248, 335, 542, 877
KspAI	GTTAAC	1 cut(s)	915
Kzo9I	GATC	4 cut(s)	430, 457, 788, 843
Lsp1109I	GCAGC	1 cut(s)	105
MaeI	CTAG	4 cut(s)	171, 377, 570, 1008
MaeII	ACGT	2 cut(s)	508, 945
MaeIII	GTNAC	3 cut(s)	65, 259, 379
MalI	GATC	4 cut(s)	432, 459, 790, 845
MboI	GATC	4 cut(s)	430, 457, 788, 843
MboII	GAAGA	6 cut(s)	452, 792, 1003, 1006, 1009, 1012
MflI	RGATCY	2 cut(s)	457, 843
MhlI	GDGCHC	2 cut(s)	687, 837
MluCI	AATT	8 cut(s)	56, 109, 132, 248, 444, 534, 543, 815
MnlI	CCTC	2 cut(s)	143, 189
MroXI	GAANNNNTTC	2 cut(s)	10, 321
MseI	TTAA	3 cut(s)	45, 812, 914
MspI	CCGG	1 cut(s)	635
MspR9I	CCNGG	2 cut(s)	520, 636
MvaI	CCWGG	1 cut(s)	520
MwoI	GCNNNNNNNGC	2 cut(s)	770, 869
NciI	CCSGG	1 cut(s)	636
NdeII	GATC	4 cut(s)	430, 457, 788, 843
NlaIII	CATG	4 cut(s)	248, 335, 542, 877
NlaIV	GGNNCC	1 cut(s)	845
NmuCI	GTSAC	2 cut(s)	65, 379
PagI	TCATGA	1 cut(s)	331
PceI	AGGCCT	1 cut(s)	178
PdmI	GAANNNNTTC	2 cut(s)	10, 321
PfeI	GAWTC	2 cut(s)	322, 435
PflMI	CCANNNNNTGG	1 cut(s)	854
PkrI	GCNGC	1 cut(s)	120
PshAI	GACNNNNGTC	1 cut(s)	306
Psp6I	CCWGG	1 cut(s)	518
PspFI	CCCAGC	2 cut(s)	216, 230
PspGI	CCWGG	1 cut(s)	518
PspN4I	GGNNCC	1 cut(s)	845
PstI	CTGCAG	1 cut(s)	787
PstNI	CAGNNNCTG	1 cut(s)	493
PsuI	RGATCY	2 cut(s)	457, 843
RsaI	GTAC	1 cut(s)	481
RsaNI	GTAC	1 cut(s)	480
SalI	GTCGAC	1 cut(s)	299
SaqAI	TTAA	3 cut(s)	45, 812, 914
SatI	GCNGC	1 cut(s)	119
Sau3AI	GATC	4 cut(s)	430, 457, 788, 843
ScaI	AGTACT	1 cut(s)	481
ScrFI	CCNGG	2 cut(s)	520, 636
SduI	GDGCHC	2 cut(s)	687, 837
SfcI	CTRYAG	2 cut(s)	549, 783
Sse9I	AATT	8 cut(s)	56, 109, 132, 248, 444, 534, 543, 815
SseBI	AGGCCT	1 cut(s)	178
SsiI	CCGC	1 cut(s)	639
SspMI	CTAG	4 cut(s)	171, 377, 570, 1008
StuI	AGGCCT	1 cut(s)	178
StyD4I	CCNGG	2 cut(s)	518, 634
StyI	CCWWGG	2 cut(s)	578, 838
TaaI	ACNGT	6 cut(s)	80, 104, 158, 224, 385, 479
TaiI	ACGT	2 cut(s)	511, 948
TaqI	TCGA	4 cut(s)	83, 300, 340, 433
TasI	AATT	8 cut(s)	56, 109, 132, 248, 444, 534, 543, 815
TatI	WGTACW	1 cut(s)	479
TfiI	GAWTC	2 cut(s)	322, 435
Tru1I	TTAA	3 cut(s)	45, 812, 914
Tru9I	TTAA	3 cut(s)	45, 812, 914
TscAI	CASTG	1 cut(s)	498
TseFI	GTSAC	2 cut(s)	65, 379
TseI	GCWGC	1 cut(s)	118
Tsp45I	GTSAC	2 cut(s)	65, 379
TspDTI	ATGAA	5 cut(s)	261, 330, 527, 599, 791
TspGWI	ACGGA	2 cut(s)	683, 781
TspRI	CASTG	1 cut(s)	498
Van91I	CCANNNNNTGG	1 cut(s)	854
VneI	GTGCAC	1 cut(s)	833
XapI	RAATTY	2 cut(s)	132, 534
XcmI	CCANNNNNNNNNTGG	1 cut(s)	880
XmiI	GTMKAC	1 cut(s)	300
XmnI	GAANNNNTTC	2 cut(s)	10, 321
XspI	CTAG	4 cut(s)	171, 377, 570, 1008
ZrmI	AGTACT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.