Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003855

Physical Location & Seq

Genomic Coordinates Forward (+)

28813410 .. 28814555

Gene Structure 1146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1209000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGTAGAACCATTTGTTATGTACAAAGCATCATCAAGTTTGCTAGTGTATTTGTTCCTTGAAAGATTTAGGAAAGAGTATGTGTGTGTGTATAACACGTTCAAGGACCTCTTACCAATCTTAGTCAAGTATGTCAAAAGCCGTCAAAAACCGGGAGGTTGTGTAATGTTGGTTGCTCACAATGCTCGTACTTTTGATGTACCCTTCGTTAGAAGTGAATTCCTTCGCTGTTCCGTAGATATTCCTTCAACTTGGCTGTTCAGGGATACCATGCCTTTGGGACGTGAAGCAATGAAGTCTGAAGGATCATCTTCAAGAAGTATATCGTTGCAAGCCCTTCGTGAGCACTTCCAGATTCCATTGGATGGTACAGCTCACAGAGCCATGGCCGACGTGAAAGTGCTGTCAGCAGTTTTACAAAGGCTGACTTGTATTCTGAAACTCCCACTTTCCAGCCTTGTTGGAGAAGCTTTCTTAGCGTCGGAAACTGGCACTGCAAAGAAAAAGGGTTCCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000738 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006308 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009536 GO:0009987 GO:0016787 GO:0016788 GO:0019439 GO:0034641 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0071704 GO:0090304 GO:0090305 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

173

Amino Acids

19.37

Weight (kDa)

9.69

Isoelectric Point (pI)

40.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_T	PF00929	57 - 138	7.8e-09	Exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26940 AT5G26940 AT5G26940 AT5G26940
fragaria_vesca	FvH4_4g19220 FvH4_6g07110 FvH4_6g07110
malus_domestica	MD12G1208900.v1.1 MD12G1209000.v1.1 MD13G1159900.v1.1
prunus_persica	Prupe.1G126500_v2.0.a1 Prupe.1G126500_v2.0.a1 Prupe.6G316100_v2.0.a1 Prupe.6G316100_v2.0.a1 Prupe.6G316100_v2.0.a1
pyrus_communis	pycom12g19620 pycom13g13620
rosa_chinensis	RchiOBHm_Chr3g0456691 RchiOBHm_Chr4g0424201
rosa_laevigata	RLG00000007497 RLG00000025283
rosa_roxburghii	Rroxscaffold_11G00450390 Rroxscaffold_6G00422530
rosa_rugosa	Rorug03G0015100 Rorug04G0193700
rosa_samantha	Rh3AG075600 Rh3BG077500 Rh3CG077300 Rh3DG079200 Rh4AG251500 Rh4CG267500 Rh4DG251300
rosa_wichuraiana	Rw3G006480 Rw4G021690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	365
AclWI	GGATC	1 cut(s)	313
AcoI	YGGCCR	1 cut(s)	387
AcsI	RAATTY	1 cut(s)	218
AcuI	CTGAAG	1 cut(s)	321
AfaI	GTAC	4 cut(s)	23, 190, 201, 370
AfiI	CCNNNNNNNGG	1 cut(s)	365
AflIII	ACRYGT	1 cut(s)	96
AgsI	TTSAA	4 cut(s)	62, 103, 249, 315
AjiI	CACGTC	2 cut(s)	284, 394
AluBI	AGCT	2 cut(s)	374, 470
AluI	AGCT	2 cut(s)	374, 470
Alw21I	GWGCWC	1 cut(s)	348
AlwI	GGATC	1 cut(s)	313
AoxI	GGCC	1 cut(s)	387
ApoI	RAATTY	1 cut(s)	218
Asp700I	GAANNNNTTC	1 cut(s)	222
AspS9I	GGNCC	1 cut(s)	106
AsuC2I	CCSGG	1 cut(s)	153
AvaII	GGWCC	1 cut(s)	106
Bbv12I	GWGCWC	1 cut(s)	348
BccI	CCATC	1 cut(s)	359
BceAI	ACGGC	1 cut(s)	126
BcgI	CGANNNNNNTGC	2 cut(s)	320, 354
BciVI	GTATCC	1 cut(s)	259
BcnI	CCSGG	1 cut(s)	153
BfaI	CTAG	1 cut(s)	44
BfuI	GTATCC	1 cut(s)	259
Bme1390I	CCNGG	1 cut(s)	153
Bme18I	GGWCC	1 cut(s)	106
BmgBI	CACGTC	2 cut(s)	284, 394
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	1 cut(s)	511
BmrFI	CCNGG	1 cut(s)	153
BmsI	GCATC	1 cut(s)	38
BpuMI	CCSGG	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	384
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bsc4I	CCNNNNNNNGG	1 cut(s)	365
Bse1I	ACTGG	1 cut(s)	493
Bse3DI	GCAATG	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	384
BseGI	GGATG	1 cut(s)	370
BseLI	CCNNNNNNNGG	1 cut(s)	365
BseMI	GCAATG	1 cut(s)	297
BseNI	ACTGG	1 cut(s)	493
BshFI	GGCC	1 cut(s)	389
BsiHKAI	GWGCWC	1 cut(s)	348
BsiSI	CCGG	1 cut(s)	152
BslFI	GGGAC	1 cut(s)	294
BslI	CCNNNNNNNGG	1 cut(s)	365
BsmFI	GGGAC	1 cut(s)	294
BsnI	GGCC	1 cut(s)	389
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp1407I	TGTACA	1 cut(s)	21
Bsp143I	GATC	1 cut(s)	305
Bsp19I	CCATGG	1 cut(s)	384
BspANI	GGCC	1 cut(s)	389
BspLI	GGNNCC	1 cut(s)	511
BspPI	GGATC	1 cut(s)	313
BsrDI	GCAATG	1 cut(s)	297
BsrGI	TGTACA	1 cut(s)	21
BsrI	ACTGG	1 cut(s)	493
BssECI	CCNNGG	1 cut(s)	384
BssMI	GATC	1 cut(s)	305
BssT1I	CCWWGG	1 cut(s)	384
BstAUI	TGTACA	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	2 cut(s)	121, 475
BstDSI	CCRYGG	1 cut(s)	384
BstF5I	GGATG	1 cut(s)	370
BstKTI	GATC	1 cut(s)	308
BstMBI	GATC	1 cut(s)	305
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 380, 476
BstSCI	CCNGG	1 cut(s)	151
BstXI	CCANNNNNNTGG	1 cut(s)	277
BsuI	GTATCC	1 cut(s)	259
BsuRI	GGCC	1 cut(s)	389
BtgI	CCRYGG	1 cut(s)	384
BtrI	CACGTC	2 cut(s)	284, 394
BtsCI	GGATG	1 cut(s)	370
BtsI	GCAGTG	1 cut(s)	492
BtsIMutI	CAGTG	1 cut(s)	492
Cac8I	GCNNGC	1 cut(s)	333
Cfr13I	GGNCC	1 cut(s)	106
CseI	GACGC	1 cut(s)	468
Csp6I	GTAC	4 cut(s)	22, 189, 200, 369
CviAII	CATG	2 cut(s)	271, 385
CviJI	RGCY	9 cut(s)	141, 256, 335, 374, 383, 389, 424, 456, 470
CviKI_1	RGCY	9 cut(s)	141, 256, 335, 374, 383, 389, 424, 456, 470
CviQI	GTAC	4 cut(s)	22, 189, 200, 369
DdeI	CTNAG	2 cut(s)	121, 475
DpnI	GATC	1 cut(s)	307
DpnII	GATC	1 cut(s)	305
EaeI	YGGCCR	1 cut(s)	387
Eco130I	CCWWGG	1 cut(s)	384
Eco47I	GGWCC	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	321
EcoO109I	RGGNCCY	1 cut(s)	106
EcoRI	GAATTC	1 cut(s)	218
EcoT14I	CCWWGG	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	2 cut(s)	274, 388
FaiI	YATR	7 cut(s)	20, 81, 93, 132, 272, 323, 386
FalI	AAGNNNNNCTT	4 cut(s)	95, 127, 412, 444
FaqI	GGGAC	1 cut(s)	294
FatI	CATG	2 cut(s)	270, 384
FokI	GGATG	1 cut(s)	377
FspBI	CTAG	1 cut(s)	44
HaeIII	GGCC	1 cut(s)	389
HapII	CCGG	1 cut(s)	152
HgaI	GACGC	1 cut(s)	468
Hin1II	CATG	2 cut(s)	274, 388
HindIII	AAGCTT	1 cut(s)	468
HinfI	GANTC	1 cut(s)	355
HpaII	CCGG	1 cut(s)	152
Hpy188I	TCNGA	3 cut(s)	301, 438, 484
Hpy188III	TCNNGA	4 cut(s)	315, 341, 352, 513
Hpy99I	CGWCG	2 cut(s)	395, 484
HpyAV	CCTTC	5 cut(s)	214, 233, 255, 296, 347
HpyCH4IV	ACGT	3 cut(s)	98, 283, 393
HpyCH4V	TGCA	2 cut(s)	331, 497
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 380, 476
HpyF3I	CTNAG	2 cut(s)	121, 475
HpySE526I	ACGT	3 cut(s)	98, 283, 393
Hsp92II	CATG	2 cut(s)	274, 388
Kzo9I	GATC	1 cut(s)	305
LpnPI	CCDG	5 cut(s)	165, 247, 365, 466, 474
LweI	GCATC	1 cut(s)	38
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	3 cut(s)	98, 283, 393
MalI	GATC	1 cut(s)	307
MboI	GATC	1 cut(s)	305
MboII	GAAGA	1 cut(s)	303
MhlI	GDGCHC	1 cut(s)	348
MluCI	AATT	1 cut(s)	218
MmeI	TCCRAC	2 cut(s)	442, 462
MnlI	CCTC	2 cut(s)	119, 149
MroXI	GAANNNNTTC	1 cut(s)	222
MspI	CCGG	1 cut(s)	152
MspR9I	CCNGG	1 cut(s)	153
MwoI	GCNNNNNNNGC	3 cut(s)	182, 380, 476
NciI	CCSGG	1 cut(s)	153
NcoI	CCATGG	1 cut(s)	384
NdeII	GATC	1 cut(s)	305
NlaIII	CATG	2 cut(s)	274, 388
NlaIV	GGNNCC	1 cut(s)	511
PdmI	GAANNNNTTC	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	355
PflMI	CCANNNNNTGG	1 cut(s)	365
PpuMI	RGGWCCY	1 cut(s)	106
Psp5II	RGGWCCY	1 cut(s)	106
PspN4I	GGNNCC	1 cut(s)	511
PspPI	GGNCC	1 cut(s)	106
PspPPI	RGGWCCY	1 cut(s)	106
PsrI	GAACNNNNNNTAC	2 cut(s)	83, 115
RsaI	GTAC	4 cut(s)	23, 190, 201, 370
RsaNI	GTAC	4 cut(s)	22, 189, 200, 369
Sau3AI	GATC	1 cut(s)	305
Sau96I	GGNCC	1 cut(s)	106
ScrFI	CCNGG	1 cut(s)	153
SduI	GDGCHC	1 cut(s)	348
SetI	ASST	7 cut(s)	101, 111, 160, 286, 376, 396, 472
SfaNI	GCATC	1 cut(s)	38
SinI	GGWCC	1 cut(s)	106
Sse9I	AATT	1 cut(s)	218
SspMI	CTAG	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	151
StyI	CCWWGG	1 cut(s)	384
TaiI	ACGT	3 cut(s)	101, 286, 396
TasI	AATT	1 cut(s)	218
TatI	WGTACW	1 cut(s)	21
TfiI	GAWTC	1 cut(s)	355
TscAI	CASTG	1 cut(s)	499
TspDTI	ATGAA	1 cut(s)	308
TspGWI	ACGGA	1 cut(s)	223
TspRI	CASTG	1 cut(s)	499
Van91I	CCANNNNNTGG	1 cut(s)	365
VpaK11BI	GGWCC	1 cut(s)	106
XapI	RAATTY	1 cut(s)	218
XmnI	GAANNNNTTC	1 cut(s)	222
XspI	CTAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.