Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003855

Physical Location & Seq

Genomic Coordinates Forward (+)

21390680 .. 21392534

Gene Structure 1855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g19620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGAGAACTTTGTCGATGTGCTTTTCATCTTTATCGCAACTGCCTAGATCATGCAGTGTTTATAGTTTAGCTCATTTTTGGAGTGAAGGTTTTCCCAATTTGAGCAGGACTTGTGGATACAATTGTAGCTCTAAGCTACATGATTCCAGAATTTATGCGGTTGATGGAGGAAACAGTAGGAAATGGACTAGAAGATCTCTGACCACAAAAGCAGAAGGAAGAAACAAGAGCCCCATAAAACTTAGGCGTGAAATTTTAGATGTAACGGTTTCAACAAGCGCTGCATTAAATATAAATAAAATGGAAACAAGTCAATACCAACAGACTCAACCCTTAGACTTTCGACAGGCAATTGCTCAGAATAAAGACTTAGCCGACTTAGTGACAGTTATTGTTTTCGATATTGAGACTACTGGGTTTAGCAGAGAGAAAGATCGAATCATAGAGGTTGCACTTCAAGATCTTGAAGGGGGTGAAAACAGTACTTTCCAGACACTTGTAAACCCTGAACGCACTGTTCTAAATTCACATGTTCATGGAATTACAACCGATATGGTCAACAGGCCTGATGTTCCAAGGTTCAAGGACCTCTTACCAATCTTAGTCAAGTATGTCAAAAGCCGTCAAAAACCGGGAGGTTGTGTAATGTTGGTTGCTCACAATGCTCGTACTTTTGATGTACCCTTCATTAGAAGTGAATTCCTTCGCTGTTCCGTAGATATTCCTTCAACTTGGCTGTTCAGGGATACCATGCCTTTGGGACGTGAAGCAATGAAGTCTGAAGGATCATCTTCAAAAAGTATATCGTTGCAAGCCCTTCGTGAGCACTTCCAGATTCCGTTGGATGGTACAGCTCACAGAGCCATGGCCGACGTGAAAGTGCTGTCAGCAGTTTTACAAAGGCTGACTTGTATTCTGAAACTCCCACTTTATAGCCTTGTTGGAGAAGCTTTCTTAGCGTCGGAAGCTGGCACTGCAAAGAAAAAGGGTTCCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000738 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006308 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009536 GO:0009987 GO:0016787 GO:0016788 GO:0019439 GO:0034641 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0071704 GO:0090304 GO:0090305 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

333

Amino Acids

37.15

Weight (kDa)

9.47

Isoelectric Point (pI)

45.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_T	PF00929	131 - 298	2.7e-21	Exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26940 AT5G26940 AT5G26940 AT5G26940
fragaria_vesca	FvH4_4g19220 FvH4_6g07110 FvH4_6g07110
malus_domestica	MD12G1208900.v1.1 MD12G1209000.v1.1 MD13G1159900.v1.1
prunus_persica	Prupe.1G126500_v2.0.a1 Prupe.1G126500_v2.0.a1 Prupe.6G316100_v2.0.a1 Prupe.6G316100_v2.0.a1 Prupe.6G316100_v2.0.a1
pyrus_communis	pycom12g19620 pycom13g13620
rosa_chinensis	RchiOBHm_Chr3g0456691 RchiOBHm_Chr4g0424201
rosa_laevigata	RLG00000007497 RLG00000025283
rosa_roxburghii	Rroxscaffold_11G00450390 Rroxscaffold_6G00422530
rosa_rugosa	Rorug03G0015100 Rorug04G0193700
rosa_samantha	Rh3AG075600 Rh3BG077500 Rh3CG077300 Rh3DG079200 Rh4AG251500 Rh4CG267500 Rh4DG251300
rosa_wichuraiana	Rw3G006480 Rw4G021690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	158
AclWI	GGATC	1 cut(s)	793
AcoI	YGGCCR	1 cut(s)	867
AcsI	RAATTY	4 cut(s)	150, 252, 523, 698
AcuI	CTGAAG	1 cut(s)	801
AfaI	GTAC	4 cut(s)	484, 670, 681, 850
AfeI	AGCGCT	1 cut(s)	280
AfiI	CCNNNNNNNGG	1 cut(s)	845
AflIII	ACRYGT	1 cut(s)	529
AgsI	TTSAA	6 cut(s)	273, 458, 467, 583, 729, 795
AjiI	CACGTC	2 cut(s)	764, 874
AluBI	AGCT	6 cut(s)	71, 129, 136, 854, 950, 968
AluI	AGCT	6 cut(s)	71, 129, 136, 854, 950, 968
Alw21I	GWGCWC	1 cut(s)	828
Alw26I	GTCTC	1 cut(s)	401
AlwI	GGATC	1 cut(s)	793
Aor51HI	AGCGCT	1 cut(s)	280
AoxI	GGCC	2 cut(s)	563, 867
ApeKI	GCWGC	1 cut(s)	281
ApoI	RAATTY	4 cut(s)	150, 252, 523, 698
Asp700I	GAANNNNTTC	2 cut(s)	90, 702
AspLEI	GCGC	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	586
AsuC2I	CCSGG	1 cut(s)	633
AsuHPI	GGTGA	1 cut(s)	485
AvaII	GGWCC	1 cut(s)	586
BaeI	ACNNNNGTAYC	2 cut(s)	109, 142
BanII	GRGCYC	1 cut(s)	233
Bbv12I	GWGCWC	1 cut(s)	828
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	2 cut(s)	158, 839
BceAI	ACGGC	1 cut(s)	606
BcgI	CGANNNNNNTGC	2 cut(s)	800, 834
BciVI	GTATCC	2 cut(s)	110, 739
BcnI	CCSGG	1 cut(s)	633
BcoDI	GTCTC	1 cut(s)	401
BfaI	CTAG	2 cut(s)	45, 189
BfoI	RGCGCY	1 cut(s)	282
BfuI	GTATCC	2 cut(s)	110, 739
BglII	AGATCT	2 cut(s)	194, 460
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
BmcAI	AGTACT	1 cut(s)	484
Bme1390I	CCNGG	1 cut(s)	633
Bme18I	GGWCC	1 cut(s)	586
BmgBI	CACGTC	2 cut(s)	764, 874
BmgT120I	GGNCC	1 cut(s)	586
BmiI	GGNNCC	1 cut(s)	991
BmrFI	CCNGG	1 cut(s)	633
BmrI	ACTGGG	1 cut(s)	423
BmuI	ACTGGG	1 cut(s)	423
BpuMI	CCSGG	1 cut(s)	633
BsaJI	CCNNGG	2 cut(s)	575, 864
BsaXI	ACNNNNNCTCC	4 cut(s)	73, 103, 627, 657
Bsc4I	CCNNNNNNNGG	1 cut(s)	845
Bse1I	ACTGG	1 cut(s)	418
Bse3DI	GCAATG	1 cut(s)	777
BseDI	CCNNGG	2 cut(s)	575, 864
BseGI	GGATG	1 cut(s)	850
BseLI	CCNNNNNNNGG	1 cut(s)	845
BseMI	GCAATG	1 cut(s)	777
BseMII	CTCAG	1 cut(s)	371
BseNI	ACTGG	1 cut(s)	418
BseXI	GCAGC	1 cut(s)	268
BshFI	GGCC	2 cut(s)	565, 869
BsiHKAI	GWGCWC	1 cut(s)	828
BsiSI	CCGG	1 cut(s)	632
BslFI	GGGAC	1 cut(s)	774
BslI	CCNNNNNNNGG	1 cut(s)	845
BsmAI	GTCTC	1 cut(s)	401
BsmFI	GGGAC	1 cut(s)	774
BsnI	GGCC	2 cut(s)	565, 869
Bsp1286I	GDGCHC	2 cut(s)	233, 828
Bsp143I	GATC	5 cut(s)	47, 194, 433, 460, 785
Bsp19I	CCATGG	1 cut(s)	864
BspACI	CCGC	1 cut(s)	158
BspANI	GGCC	2 cut(s)	565, 869
BspCNI	CTCAG	1 cut(s)	370
BspLI	GGNNCC	1 cut(s)	991
BspPI	GGATC	1 cut(s)	793
BsrDI	GCAATG	1 cut(s)	777
BsrI	ACTGG	1 cut(s)	418
BssECI	CCNNGG	2 cut(s)	575, 864
BssMI	GATC	5 cut(s)	47, 194, 433, 460, 785
BssT1I	CCWWGG	2 cut(s)	575, 864
Bst4CI	ACNGT	5 cut(s)	176, 268, 388, 482, 517
BstC8I	GCNNGC	2 cut(s)	813, 970
BstDEI	CTNAG	8 cut(s)	132, 242, 334, 357, 370, 379, 601, 955
BstDSI	CCRYGG	1 cut(s)	864
BstF5I	GGATG	1 cut(s)	850
BstH2I	RGCGCY	1 cut(s)	282
BstHHI	GCGC	1 cut(s)	281
BstKTI	GATC	5 cut(s)	50, 197, 436, 463, 788
BstMAI	GTCTC	1 cut(s)	401
BstMBI	GATC	5 cut(s)	47, 194, 433, 460, 785
BstMWI	GCNNNNNNNGC	5 cut(s)	662, 860, 956, 965, 974
BstNSI	RCATGY	1 cut(s)	533
BstSCI	CCNGG	1 cut(s)	631
BstV1I	GCAGC	1 cut(s)	268
BstX2I	RGATCY	2 cut(s)	194, 460
BstXI	CCANNNNNNTGG	1 cut(s)	757
BstYI	RGATCY	2 cut(s)	194, 460
BsuI	GTATCC	2 cut(s)	110, 739
BsuRI	GGCC	2 cut(s)	565, 869
BtgI	CCRYGG	1 cut(s)	864
BtrI	CACGTC	2 cut(s)	764, 874
BtsCI	GGATG	1 cut(s)	850
BtsI	GCAGTG	2 cut(s)	61, 972
BtsIMutI	CAGTG	3 cut(s)	61, 513, 972
Cac8I	GCNNGC	2 cut(s)	813, 970
CfoI	GCGC	1 cut(s)	281
Cfr13I	GGNCC	1 cut(s)	586
CseI	GACGC	1 cut(s)	948
Csp6I	GTAC	4 cut(s)	483, 669, 680, 849
CviAII	CATG	6 cut(s)	51, 140, 530, 536, 751, 865
CviQI	GTAC	4 cut(s)	483, 669, 680, 849
DdeI	CTNAG	8 cut(s)	132, 242, 334, 357, 370, 379, 601, 955
DpnI	GATC	5 cut(s)	49, 196, 435, 462, 787
DpnII	GATC	5 cut(s)	47, 194, 433, 460, 785
EaeI	YGGCCR	1 cut(s)	867
Eco130I	CCWWGG	2 cut(s)	575, 864
Eco147I	AGGCCT	1 cut(s)	565
Eco24I	GRGCYC	1 cut(s)	233
Eco47I	GGWCC	1 cut(s)	586
Eco47III	AGCGCT	1 cut(s)	280
Eco57I	CTGAAG	1 cut(s)	801
EcoO109I	RGGNCCY	1 cut(s)	586
EcoRI	GAATTC	1 cut(s)	698
EcoT14I	CCWWGG	2 cut(s)	575, 864
EcoT38I	GRGCYC	1 cut(s)	233
ErhI	CCWWGG	2 cut(s)	575, 864
FaeI	CATG	6 cut(s)	54, 143, 533, 539, 754, 868
FalI	AAGNNNNNCTT	4 cut(s)	575, 607, 892, 924
FaqI	GGGAC	1 cut(s)	774
FatI	CATG	6 cut(s)	50, 139, 529, 535, 750, 864
Fnu4HI	GCNGC	1 cut(s)	282
FokI	GGATG	1 cut(s)	857
FriOI	GRGCYC	1 cut(s)	233
Fsp4HI	GCNGC	1 cut(s)	282
FspBI	CTAG	2 cut(s)	45, 189
GlaI	GCGC	1 cut(s)	280
GluI	GCNGC	1 cut(s)	282
HaeII	RGCGCY	1 cut(s)	282
HaeIII	GGCC	2 cut(s)	565, 869
HapII	CCGG	1 cut(s)	632
HgaI	GACGC	1 cut(s)	948
HhaI	GCGC	1 cut(s)	281
Hin1II	CATG	6 cut(s)	54, 143, 533, 539, 754, 868
Hin6I	GCGC	1 cut(s)	279
HinP1I	GCGC	1 cut(s)	279
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HindIII	AAGCTT	1 cut(s)	948
HinfI	GANTC	4 cut(s)	143, 325, 438, 835
HpaII	CCGG	1 cut(s)	632
HphI	GGTGA	1 cut(s)	485
Hpy166II	GTNNAC	2 cut(s)	502, 559
Hpy188I	TCNGA	5 cut(s)	201, 360, 781, 918, 964
Hpy188III	TCNNGA	7 cut(s)	147, 458, 464, 490, 821, 832, 993
Hpy8I	GTNNAC	2 cut(s)	502, 559
Hpy99I	CGWCG	2 cut(s)	875, 964
HpyAV	CCTTC	8 cut(s)	80, 209, 461, 694, 713, 735, 776, 827
HpyCH4III	ACNGT	5 cut(s)	176, 268, 388, 482, 517
HpyCH4IV	ACGT	2 cut(s)	763, 873
HpyCH4V	TGCA	5 cut(s)	54, 284, 452, 811, 977
HpyF10VI	GCNNNNNNNGC	5 cut(s)	662, 860, 956, 965, 974
HpyF3I	CTNAG	8 cut(s)	132, 242, 334, 357, 370, 379, 601, 955
HpySE526I	ACGT	2 cut(s)	763, 873
Hsp92II	CATG	6 cut(s)	54, 143, 533, 539, 754, 868
HspAI	GCGC	1 cut(s)	279
Kzo9I	GATC	5 cut(s)	47, 194, 433, 460, 785
Lsp1109I	GCAGC	1 cut(s)	268
MaeI	CTAG	2 cut(s)	45, 189
MaeII	ACGT	2 cut(s)	763, 873
MaeIII	GTNAC	2 cut(s)	262, 382
MalI	GATC	5 cut(s)	49, 196, 435, 462, 787
MboI	GATC	5 cut(s)	47, 194, 433, 460, 785
MboII	GAAGA	3 cut(s)	204, 231, 783
MfeI	CAATTG	2 cut(s)	121, 351
MflI	RGATCY	2 cut(s)	194, 460
MhlI	GDGCHC	2 cut(s)	233, 828
MluCI	AATT	8 cut(s)	97, 121, 150, 252, 351, 523, 540, 698
MlyI	GAGTC	1 cut(s)	319
MmeI	TCCRAC	3 cut(s)	822, 922, 942
MnlI	CCTC	4 cut(s)	161, 439, 599, 629
MroXI	GAANNNNTTC	2 cut(s)	90, 702
MseI	TTAA	1 cut(s)	287
MslI	CAYNNNNRTG	1 cut(s)	534
MspI	CCGG	1 cut(s)	632
MspR9I	CCNGG	1 cut(s)	633
MunI	CAATTG	2 cut(s)	121, 351
MwoI	GCNNNNNNNGC	5 cut(s)	662, 860, 956, 965, 974
NciI	CCSGG	1 cut(s)	633
NcoI	CCATGG	1 cut(s)	864
NdeII	GATC	5 cut(s)	47, 194, 433, 460, 785
NlaIII	CATG	6 cut(s)	54, 143, 533, 539, 754, 868
NlaIV	GGNNCC	1 cut(s)	991
NmuCI	GTSAC	1 cut(s)	382
NspI	RCATGY	1 cut(s)	533
PceI	AGGCCT	1 cut(s)	565
PciI	ACATGT	1 cut(s)	529
PdmI	GAANNNNTTC	2 cut(s)	90, 702
PfeI	GAWTC	3 cut(s)	143, 438, 835
PkrI	GCNGC	1 cut(s)	283
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
PpuMI	RGGWCCY	1 cut(s)	586
PscI	ACATGT	1 cut(s)	529
Psp5II	RGGWCCY	1 cut(s)	586
PspN4I	GGNNCC	1 cut(s)	991
PspPI	GGNCC	1 cut(s)	586
PspPPI	RGGWCCY	1 cut(s)	586
PsuI	RGATCY	2 cut(s)	194, 460
RsaI	GTAC	4 cut(s)	484, 670, 681, 850
RsaNI	GTAC	4 cut(s)	483, 669, 680, 849
RseI	CAYNNNNRTG	1 cut(s)	534
SaqAI	TTAA	1 cut(s)	287
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	5 cut(s)	47, 194, 433, 460, 785
Sau96I	GGNCC	1 cut(s)	586
ScaI	AGTACT	1 cut(s)	484
SchI	GAGTC	1 cut(s)	319
ScrFI	CCNGG	1 cut(s)	633
SduI	GDGCHC	2 cut(s)	233, 828
SinI	GGWCC	1 cut(s)	586
SmiMI	CAYNNNNRTG	1 cut(s)	534
Sse9I	AATT	8 cut(s)	97, 121, 150, 252, 351, 523, 540, 698
SseBI	AGGCCT	1 cut(s)	565
SsiI	CCGC	1 cut(s)	158
SspMI	CTAG	2 cut(s)	45, 189
StuI	AGGCCT	1 cut(s)	565
StyD4I	CCNGG	1 cut(s)	631
StyI	CCWWGG	2 cut(s)	575, 864
TaaI	ACNGT	5 cut(s)	176, 268, 388, 482, 517
TaiI	ACGT	2 cut(s)	766, 876
TaqI	TCGA	4 cut(s)	14, 343, 399, 436
TasI	AATT	8 cut(s)	97, 121, 150, 252, 351, 523, 540, 698
TatI	WGTACW	1 cut(s)	482
TfiI	GAWTC	3 cut(s)	143, 438, 835
Tru1I	TTAA	1 cut(s)	287
Tru9I	TTAA	1 cut(s)	287
TscAI	CASTG	3 cut(s)	61, 520, 979
TseFI	GTSAC	1 cut(s)	382
TseI	GCWGC	1 cut(s)	281
Tsp45I	GTSAC	1 cut(s)	382
TspDTI	ATGAA	4 cut(s)	15, 524, 676, 788
TspGWI	ACGGA	2 cut(s)	703, 828
TspRI	CASTG	3 cut(s)	61, 520, 979
VpaK11BI	GGWCC	1 cut(s)	586
XapI	RAATTY	4 cut(s)	150, 252, 523, 698
XceI	RCATGY	1 cut(s)	533
XmnI	GAANNNNTTC	2 cut(s)	90, 702
XspI	CTAG	2 cut(s)	45, 189
ZrmI	AGTACT	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.