Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003855

Physical Location & Seq

Genomic Coordinates Forward (+)

28811283 .. 28813408

Gene Structure 2126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1208900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGAGAACTTTGTCGATGTGCTTTTCATCTTTATCGCAAGTGCCTAGATCATGCAGTGTTTATAGTTTAGCTCATTTTTGGAGTGAAGGTTTTCCCAATTTGAGCAGGACTTGTGGATACAATTGTAACTCTAAGCTACATGATTCCAGAATTTATGCGGTTGATGGAGGAAACAGTAGGAAATGGACTAGAAGATCTCTGACCACAAAAACAGAAGGAAGAAACAAAAGCCCCATAAAACTTAGCCGTGAAATTTTAGATGTAACGGTTTCAACAAGCGCTGCATTAAATATAAATAAAATGGAAACAAGTCAATACCAACAGACTCAACCCTTAGACTTTCGACAGGCAATTGCTCAGAATAAAGACTTAGCCGACTTAGTGACAGTTATTGTTTTCGATATTGAGACTACTGGGTTTAGCAGAGAGAAAGATCGAATCATAGAGATTGCACTTCAAGATCTTGAAGGGGGTGAAAACAGTACTTTCCAGACACTGGTAAACCCTGAACGCAGTGTTCTAAATTCACATGTTCATGGAATTACAACCGATATGGTCAACAGGCCTGATGTTCCAAGGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000738 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006308 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009536 GO:0009987 GO:0016787 GO:0016788 GO:0019439 GO:0034641 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0071704 GO:0090304 GO:0090305 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

195

Amino Acids

21.86

Weight (kDa)

8.38

Isoelectric Point (pI)

52.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_T	PF00929	131 - 187	1.2e-09	Exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26940 AT5G26940 AT5G26940 AT5G26940
fragaria_vesca	FvH4_4g19220 FvH4_6g07110 FvH4_6g07110
malus_domestica	MD12G1208900.v1.1 MD12G1209000.v1.1 MD13G1159900.v1.1
prunus_persica	Prupe.1G126500_v2.0.a1 Prupe.1G126500_v2.0.a1 Prupe.6G316100_v2.0.a1 Prupe.6G316100_v2.0.a1 Prupe.6G316100_v2.0.a1
pyrus_communis	pycom12g19620 pycom13g13620
rosa_chinensis	RchiOBHm_Chr3g0456691 RchiOBHm_Chr4g0424201
rosa_laevigata	RLG00000007497 RLG00000025283
rosa_roxburghii	Rroxscaffold_11G00450390 Rroxscaffold_6G00422530
rosa_rugosa	Rorug03G0015100 Rorug04G0193700
rosa_samantha	Rh3AG075600 Rh3BG077500 Rh3CG077300 Rh3DG079200 Rh4AG251500 Rh4CG267500 Rh4DG251300
rosa_wichuraiana	Rw3G006480 Rw4G021690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	496
AciI	CCGC	1 cut(s)	158
AcsI	RAATTY	3 cut(s)	150, 252, 523
AfaI	GTAC	1 cut(s)	484
AfeI	AGCGCT	1 cut(s)	280
AfiI	CCNNNNNNNGG	1 cut(s)	496
AflIII	ACRYGT	1 cut(s)	529
AgsI	TTSAA	3 cut(s)	273, 458, 467
AluBI	AGCT	2 cut(s)	71, 136
AluI	AGCT	2 cut(s)	71, 136
Alw26I	GTCTC	1 cut(s)	401
AlwNI	CAGNNNCTG	1 cut(s)	496
Aor51HI	AGCGCT	1 cut(s)	280
AoxI	GGCC	1 cut(s)	563
ApeKI	GCWGC	1 cut(s)	281
ApoI	RAATTY	3 cut(s)	150, 252, 523
Asp700I	GAANNNNTTC	1 cut(s)	90
AspLEI	GCGC	1 cut(s)	281
AsuHPI	GGTGA	1 cut(s)	485
BaeI	ACNNNNGTAYC	2 cut(s)	109, 142
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	1 cut(s)	158
BceAI	ACGGC	1 cut(s)	231
BciVI	GTATCC	1 cut(s)	110
BcoDI	GTCTC	1 cut(s)	401
BfaI	CTAG	2 cut(s)	45, 189
BfoI	RGCGCY	1 cut(s)	282
BfuI	GTATCC	1 cut(s)	110
BglII	AGATCT	2 cut(s)	194, 460
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
BmcAI	AGTACT	1 cut(s)	484
BmrI	ACTGGG	1 cut(s)	423
BmuI	ACTGGG	1 cut(s)	423
BsaJI	CCNNGG	1 cut(s)	575
BsaXI	ACNNNNNCTCC	2 cut(s)	73, 103
Bsc4I	CCNNNNNNNGG	1 cut(s)	496
Bse1I	ACTGG	2 cut(s)	418, 501
BseDI	CCNNGG	1 cut(s)	575
BseLI	CCNNNNNNNGG	1 cut(s)	496
BseMII	CTCAG	1 cut(s)	371
BseNI	ACTGG	2 cut(s)	418, 501
BseXI	GCAGC	1 cut(s)	268
BshFI	GGCC	1 cut(s)	565
BslI	CCNNNNNNNGG	1 cut(s)	496
BsmAI	GTCTC	1 cut(s)	401
BsnI	GGCC	1 cut(s)	565
Bsp143I	GATC	4 cut(s)	47, 194, 433, 460
BspACI	CCGC	1 cut(s)	158
BspANI	GGCC	1 cut(s)	565
BspCNI	CTCAG	1 cut(s)	370
BsrI	ACTGG	2 cut(s)	418, 501
BssECI	CCNNGG	1 cut(s)	575
BssMI	GATC	4 cut(s)	47, 194, 433, 460
BssT1I	CCWWGG	1 cut(s)	575
Bst4CI	ACNGT	4 cut(s)	176, 268, 388, 482
BstDEI	CTNAG	6 cut(s)	132, 242, 334, 357, 370, 379
BstH2I	RGCGCY	1 cut(s)	282
BstHHI	GCGC	1 cut(s)	281
BstKTI	GATC	4 cut(s)	50, 197, 436, 463
BstMAI	GTCTC	1 cut(s)	401
BstMBI	GATC	4 cut(s)	47, 194, 433, 460
BstNSI	RCATGY	1 cut(s)	533
BstV1I	GCAGC	1 cut(s)	268
BstX2I	RGATCY	2 cut(s)	194, 460
BstYI	RGATCY	2 cut(s)	194, 460
BsuI	GTATCC	1 cut(s)	110
BsuRI	GGCC	1 cut(s)	565
BtsI	GCAGTG	2 cut(s)	61, 520
BtsIMutI	CAGTG	3 cut(s)	61, 494, 520
CaiI	CAGNNNCTG	1 cut(s)	496
CfoI	GCGC	1 cut(s)	281
Csp6I	GTAC	1 cut(s)	483
CviAII	CATG	4 cut(s)	51, 140, 530, 536
CviJI	RGCY	7 cut(s)	71, 136, 231, 246, 374, 565, 580
CviKI_1	RGCY	7 cut(s)	71, 136, 231, 246, 374, 565, 580
CviQI	GTAC	1 cut(s)	483
DdeI	CTNAG	6 cut(s)	132, 242, 334, 357, 370, 379
DpnI	GATC	4 cut(s)	49, 196, 435, 462
DpnII	GATC	4 cut(s)	47, 194, 433, 460
Eco130I	CCWWGG	1 cut(s)	575
Eco147I	AGGCCT	1 cut(s)	565
Eco47III	AGCGCT	1 cut(s)	280
EcoT14I	CCWWGG	1 cut(s)	575
ErhI	CCWWGG	1 cut(s)	575
FaeI	CATG	4 cut(s)	54, 143, 533, 539
FatI	CATG	4 cut(s)	50, 139, 529, 535
Fnu4HI	GCNGC	1 cut(s)	282
Fsp4HI	GCNGC	1 cut(s)	282
FspBI	CTAG	2 cut(s)	45, 189
GlaI	GCGC	1 cut(s)	280
GluI	GCNGC	1 cut(s)	282
HaeII	RGCGCY	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	565
HhaI	GCGC	1 cut(s)	281
Hin1II	CATG	4 cut(s)	54, 143, 533, 539
Hin6I	GCGC	1 cut(s)	279
HinP1I	GCGC	1 cut(s)	279
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HinfI	GANTC	3 cut(s)	143, 325, 438
HphI	GGTGA	1 cut(s)	485
Hpy166II	GTNNAC	2 cut(s)	502, 559
Hpy188I	TCNGA	2 cut(s)	201, 360
Hpy188III	TCNNGA	4 cut(s)	147, 458, 464, 490
Hpy8I	GTNNAC	2 cut(s)	502, 559
HpyAV	CCTTC	3 cut(s)	80, 209, 461
HpyCH4III	ACNGT	4 cut(s)	176, 268, 388, 482
HpyCH4V	TGCA	3 cut(s)	54, 284, 452
HpyF3I	CTNAG	6 cut(s)	132, 242, 334, 357, 370, 379
Hsp92II	CATG	4 cut(s)	54, 143, 533, 539
HspAI	GCGC	1 cut(s)	279
Kzo9I	GATC	4 cut(s)	47, 194, 433, 460
LpnPI	CCDG	9 cut(s)	91, 160, 332, 399, 482, 503, 519, 547, 579
Lsp1109I	GCAGC	1 cut(s)	268
MaeI	CTAG	2 cut(s)	45, 189
MaeIII	GTNAC	3 cut(s)	125, 262, 382
MalI	GATC	4 cut(s)	49, 196, 435, 462
MboI	GATC	4 cut(s)	47, 194, 433, 460
MboII	GAAGA	2 cut(s)	204, 231
MfeI	CAATTG	2 cut(s)	121, 351
MflI	RGATCY	2 cut(s)	194, 460
MluCI	AATT	7 cut(s)	97, 121, 150, 252, 351, 523, 540
MlyI	GAGTC	1 cut(s)	319
MnlI	CCTC	1 cut(s)	161
MroXI	GAANNNNTTC	1 cut(s)	90
MseI	TTAA	1 cut(s)	287
MslI	CAYNNNNRTG	1 cut(s)	534
MunI	CAATTG	2 cut(s)	121, 351
NdeII	GATC	4 cut(s)	47, 194, 433, 460
NlaIII	CATG	4 cut(s)	54, 143, 533, 539
NmuCI	GTSAC	1 cut(s)	382
NspI	RCATGY	1 cut(s)	533
PceI	AGGCCT	1 cut(s)	565
PciI	ACATGT	1 cut(s)	529
PdmI	GAANNNNTTC	1 cut(s)	90
PfeI	GAWTC	2 cut(s)	143, 438
PflMI	CCANNNNNTGG	1 cut(s)	496
PkrI	GCNGC	1 cut(s)	283
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
PscI	ACATGT	1 cut(s)	529
PstNI	CAGNNNCTG	1 cut(s)	496
PsuI	RGATCY	2 cut(s)	194, 460
RsaI	GTAC	1 cut(s)	484
RsaNI	GTAC	1 cut(s)	483
RseI	CAYNNNNRTG	1 cut(s)	534
SaqAI	TTAA	1 cut(s)	287
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	4 cut(s)	47, 194, 433, 460
ScaI	AGTACT	1 cut(s)	484
SchI	GAGTC	1 cut(s)	319
SetI	ASST	3 cut(s)	73, 91, 138
SmiMI	CAYNNNNRTG	1 cut(s)	534
Sse9I	AATT	7 cut(s)	97, 121, 150, 252, 351, 523, 540
SseBI	AGGCCT	1 cut(s)	565
SsiI	CCGC	1 cut(s)	158
SspMI	CTAG	2 cut(s)	45, 189
StuI	AGGCCT	1 cut(s)	565
StyI	CCWWGG	1 cut(s)	575
TaaI	ACNGT	4 cut(s)	176, 268, 388, 482
TaqI	TCGA	4 cut(s)	14, 343, 399, 436
TasI	AATT	7 cut(s)	97, 121, 150, 252, 351, 523, 540
TatI	WGTACW	1 cut(s)	482
TfiI	GAWTC	2 cut(s)	143, 438
Tru1I	TTAA	1 cut(s)	287
Tru9I	TTAA	1 cut(s)	287
TscAI	CASTG	3 cut(s)	61, 501, 520
TseFI	GTSAC	1 cut(s)	382
TseI	GCWGC	1 cut(s)	281
Tsp45I	GTSAC	1 cut(s)	382
TspDTI	ATGAA	2 cut(s)	15, 524
TspRI	CASTG	3 cut(s)	61, 501, 520
Van91I	CCANNNNNTGG	1 cut(s)	496
XapI	RAATTY	3 cut(s)	150, 252, 523
XceI	RCATGY	1 cut(s)	533
XmnI	GAANNNNTTC	1 cut(s)	90
XspI	CTAG	2 cut(s)	45, 189
ZrmI	AGTACT	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.