AT5G37290

Armadillo repeat-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
14762341 .. 14764410
2070 bp
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UTR
Exon/CDS
Intron
AT5G37290.1

Sequence Viewer

Length: 543 bp
ATGTTTACAAATAATCAAAGACAAGAAGAACGTACTGGAAAACATGGAACACCAAGGCTTCAATATCTTCAGGAGCTTGTGAGTCAGTTTCAGAATGCAACTGATGAAGAAACAAAGGAGAGAATTGTAGCAAACTTGGCGAATTTTGCATATGACCCTTACAACTACACTATTTTACGTCAGCTAAATGTCTTGGAACTATTCGTAGACTGTATAACAGAGCCAAATGAGAAGCTTGTAGAATTTGGGATAGGAGGAATATGCAACGCTTGTGCCGAGCCAAAAAACGTTGCTACCATTGTCGAGGCTGATGGAATTCCTCTGATAATCAAATCCTTATCAAGCCCTGTCCGGAACACTGTGAACTACGCGCTTGGGGCTTTGTATTACATGTGTGACTATAACAGAGCAACGAGAGAGGAGATTTTGAGACCAGAAGTGGTGGATCTCATCGAGAGGTACGCAGCGGCTGAATCTGTCAGTGTAAGCTTTAGTAACTTGGCTAAGGCGTTTCTTGACAAGCATGTTCATGCAAACACATGA

Protein Analysis

180

Amino Acids

20.32

Weight (kDa)

5.02

Isoelectric Point (pI)

41.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 207
AccII CGCG 1 cut(s) 371
AccIII TCCGGA 1 cut(s) 351
AciI CCGC 1 cut(s) 467
AclI AACGTT 1 cut(s) 288
AclWI GGATC 1 cut(s) 453
AcsI RAATTY 3 cut(s) 142, 242, 315
AcuI CTGAAG 1 cut(s) 53
AfaI GTAC 2 cut(s) 34, 461
AflIII ACRYGT 1 cut(s) 390
AgsI TTSAA 1 cut(s) 62
AluBI AGCT 4 cut(s) 76, 184, 235, 489
AluI AGCT 4 cut(s) 76, 184, 235, 489
Alw26I GTCTC 1 cut(s) 424
AlwI GGATC 1 cut(s) 453
AlwNI CAGNNNCTG 1 cut(s) 470
Aor13HI TCCGGA 1 cut(s) 351
ApeKI GCWGC 1 cut(s) 464
ApoI RAATTY 3 cut(s) 142, 242, 315
AspLEI GCGC 1 cut(s) 373
BbvI GCAGC 1 cut(s) 476
BccI CCATC 1 cut(s) 305
BcoDI GTCTC 1 cut(s) 424
BisI GCNGC 2 cut(s) 465, 468
BlsI GCNGC 2 cut(s) 466, 469
Bpu10I CCTNAGC 1 cut(s) 504
BsaI GGTCTC 1 cut(s) 424
BsaJI CCNNGG 1 cut(s) 53
BsaWI WCCGGW 1 cut(s) 351
Bse1I ACTGG 1 cut(s) 40
BseAI TCCGGA 1 cut(s) 351
BseDI CCNNGG 1 cut(s) 53
BseNI ACTGG 1 cut(s) 40
BseRI GAGGAG 1 cut(s) 434
BseXI GCAGC 1 cut(s) 476
Bsh1236I CGCG 1 cut(s) 371
BsiSI CCGG 1 cut(s) 352
BsmAI GTCTC 1 cut(s) 424
BsmI GAATGC 1 cut(s) 100
Bso31I GGTCTC 1 cut(s) 424
Bsp13I TCCGGA 1 cut(s) 351
Bsp143I GATC 1 cut(s) 445
BspACI CCGC 1 cut(s) 467
BspEI TCCGGA 1 cut(s) 351
BspFNI CGCG 1 cut(s) 371
BspPI GGATC 1 cut(s) 453
BspTNI GGTCTC 1 cut(s) 424
BsrI ACTGG 1 cut(s) 40
BssECI CCNNGG 1 cut(s) 53
BssMI GATC 1 cut(s) 445
BssT1I CCWWGG 1 cut(s) 53
Bst4CI ACNGT 2 cut(s) 212, 361
BstDEI CTNAG 1 cut(s) 504
BstFNI CGCG 1 cut(s) 371
BstHHI GCGC 1 cut(s) 373
BstKTI GATC 1 cut(s) 448
BstMAI GTCTC 1 cut(s) 424
BstMBI GATC 1 cut(s) 445
BstMWI GCNNNNNNNGC 3 cut(s) 137, 146, 377
BstNSI RCATGY 2 cut(s) 394, 527
BstUI CGCG 1 cut(s) 371
BstV1I GCAGC 1 cut(s) 476
BstX2I RGATCY 1 cut(s) 445
BstYI RGATCY 1 cut(s) 445
BtsIMutI CAGTG 2 cut(s) 357, 487
CaiI CAGNNNCTG 1 cut(s) 470
CfoI GCGC 1 cut(s) 373
Csp6I GTAC 2 cut(s) 33, 460
CviAII CATG 5 cut(s) 44, 391, 524, 530, 540
CviQI GTAC 2 cut(s) 33, 460
DdeI CTNAG 1 cut(s) 504
DpnI GATC 1 cut(s) 447
DpnII GATC 1 cut(s) 445
Eco130I CCWWGG 1 cut(s) 53
Eco31I GGTCTC 1 cut(s) 424
Eco57I CTGAAG 1 cut(s) 53
EcoRI GAATTC 1 cut(s) 315
EcoT14I CCWWGG 1 cut(s) 53
ErhI CCWWGG 1 cut(s) 53
FaeI CATG 5 cut(s) 47, 394, 527, 533, 543
FatI CATG 5 cut(s) 43, 390, 523, 529, 539
FauNDI CATATG 1 cut(s) 151
FblI GTMKAC 1 cut(s) 207
Fnu4HI GCNGC 2 cut(s) 465, 468
Fsp4HI GCNGC 2 cut(s) 465, 468
GlaI GCGC 1 cut(s) 372
GluI GCNGC 2 cut(s) 465, 468
HapII CCGG 1 cut(s) 352
HhaI GCGC 1 cut(s) 373
Hin1II CATG 5 cut(s) 47, 394, 527, 533, 543
Hin6I GCGC 1 cut(s) 371
HinP1I GCGC 1 cut(s) 371
HindIII AAGCTT 2 cut(s) 233, 487
HinfI GANTC 2 cut(s) 82, 473
HpaII CCGG 1 cut(s) 352
Hpy166II GTNNAC 3 cut(s) 6, 208, 364
Hpy188I TCNGA 2 cut(s) 93, 324
Hpy188III TCNNGA 4 cut(s) 71, 352, 454, 515
Hpy8I GTNNAC 3 cut(s) 6, 208, 364
HpyCH4III ACNGT 2 cut(s) 212, 361
HpyCH4IV ACGT 3 cut(s) 31, 178, 288
HpyCH4V TGCA 4 cut(s) 98, 149, 264, 533
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 146, 377
HpyF3I CTNAG 1 cut(s) 504
HpySE526I ACGT 3 cut(s) 31, 178, 288
Hsp92II CATG 5 cut(s) 47, 394, 527, 533, 543
HspAI GCGC 1 cut(s) 371
Kpn2I TCCGGA 1 cut(s) 351
Kzo9I GATC 1 cut(s) 445
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 5 cut(s) 21, 56, 360, 365, 447
Lsp1109I GCAGC 1 cut(s) 476
MaeII ACGT 3 cut(s) 31, 178, 288
MaeIII GTNAC 2 cut(s) 395, 494
MalI GATC 1 cut(s) 447
MboI GATC 1 cut(s) 445
MboII GAAGA 3 cut(s) 38, 59, 119
MflI RGATCY 1 cut(s) 445
MluCI AATT 4 cut(s) 123, 142, 242, 315
MlyI GAGTC 1 cut(s) 91
MnlI CCTC 5 cut(s) 248, 298, 330, 412, 450
MroI TCCGGA 1 cut(s) 351
MslI CAYNNNNRTG 1 cut(s) 528
MspA1I CMGCKG 1 cut(s) 467
MspI CCGG 1 cut(s) 352
Mva1269I GAATGC 1 cut(s) 100
MvnI CGCG 1 cut(s) 371
MwoI GCNNNNNNNGC 3 cut(s) 137, 146, 377
NdeI CATATG 1 cut(s) 151
NdeII GATC 1 cut(s) 445
NlaIII CATG 5 cut(s) 47, 394, 527, 533, 543
NmeAIII GCCGAG 1 cut(s) 301
NmuCI GTSAC 1 cut(s) 395
NspI RCATGY 2 cut(s) 394, 527
PciI ACATGT 1 cut(s) 390
PcsI WCGNNNNNNNCGW 1 cut(s) 273
PctI GAATGC 1 cut(s) 100
PfeI GAWTC 1 cut(s) 473
PkrI GCNGC 2 cut(s) 466, 469
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
PscI ACATGT 1 cut(s) 390
Psp1406I AACGTT 1 cut(s) 288
PstNI CAGNNNCTG 1 cut(s) 470
PsuI RGATCY 1 cut(s) 445
RsaI GTAC 2 cut(s) 34, 461
RsaNI GTAC 2 cut(s) 33, 460
RseI CAYNNNNRTG 1 cut(s) 528
SatI GCNGC 2 cut(s) 465, 468
Sau3AI GATC 1 cut(s) 445
SchI GAGTC 1 cut(s) 91
SetI ASST 8 cut(s) 34, 78, 181, 186, 237, 291, 461, 491
SmiMI CAYNNNNRTG 1 cut(s) 528
Sse9I AATT 4 cut(s) 123, 142, 242, 315
SsiI CCGC 1 cut(s) 467
StyI CCWWGG 1 cut(s) 53
TaaI ACNGT 2 cut(s) 212, 361
TaiI ACGT 3 cut(s) 34, 181, 291
TaqI TCGA 2 cut(s) 303, 453
TasI AATT 4 cut(s) 123, 142, 242, 315
TauI GCSGC 1 cut(s) 470
TfiI GAWTC 1 cut(s) 473
TscAI CASTG 2 cut(s) 364, 487
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 1 cut(s) 464
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 2 cut(s) 120, 518
TspRI CASTG 2 cut(s) 364, 487
XapI RAATTY 3 cut(s) 142, 242, 315
XceI RCATGY 2 cut(s) 394, 527
XmiI GTMKAC 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.