Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0006127

Physical Location & Seq

Genomic Coordinates Forward (+)

32434945 .. 32438974

Gene Structure 4030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1253300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGTTTACGAATGATCGGAGGCAAGAAGAGCGAACTGGAAGATCTGGAACTCCGAGGCTGCAATACCTTCAGGAGTTGGTGACTCGATTTCAGAGTACAACTGACGATGAAGAGGCAAAAGAGAAAATTGTTGCTAATTTGGCAAACTTTGCTTATGATCCTTACAACTATGCCTTTTTGCGCCAGCTCAATGTGTTGGAATTGTTTGTGGACTGCATAACCGAACCAAATGAGAAGCTGGTGGAATTTGGTGTAGGAGGGATATGCAATTGTTGTGCTGATGCAGATCCGGCAAATGCTGCAATTATCGCTCAATGTGGAGGAATCTCTCTTGTTATTCAATGTTTATCAAGTCCAGTCAGAAACACTGTGAATTATGCAATTGGATCCCTATATTATCTATGCAACGCACCTAACAAGAAGGAGATTATAAAGCCAGAGGTGGTTGATGTCATGAAGAGATATGCTGCAGCTGAAGCAGTAAATGTCAGTTTCAGTAATCTGGCCAAGGCATTTTTGGACAAACATGTTTCTGAAAACAACTTGAAGGCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0016020 GO:0016342 GO:0019897 GO:0019898 GO:0019899 GO:0019902 GO:0019903 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045294 GO:0045296 GO:0050839 GO:0071944 GO:0098796 GO:0098797

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

186

Amino Acids

20.58

Weight (kDa)

5.31

Isoelectric Point (pI)

40.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37290 AT5G37290 AT5G37290
fragaria_vesca	FvH4_5g26310 FvH4_5g27560 FvH4_5g27560
malus_domestica	MD09G1253300.v1.1
prunus_persica	Prupe.3G143200_v2.0.a1 Prupe.3G143200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0218931
rosa_laevigata	RLG00000000573 RLG00000002316 RLG00000014261
rosa_multiflora	Rmu_sc0003823.1_g000009
rosa_roxburghii	Rroxscaffold_3G00240300
rosa_rugosa	Rorug07G0179900 Rorug07G0180000 Rorug07G0180100 Rorug07G0344700
rosa_samantha	Rh7AG323200 Rh7AG499200 Rh7BG314200 Rh7CG339900 Rh7DG320300
rosa_wichuraiana	Rw6G011510 Rw7G027390 Rw7G042180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	431
AclWI	GGATC	4 cut(s)	152, 281, 381, 394
AcoI	YGGCCR	1 cut(s)	504
AcsI	RAATTY	1 cut(s)	245
AcuI	CTGAAG	2 cut(s)	53, 495
AfaI	GTAC	1 cut(s)	97
AflIII	ACRYGT	1 cut(s)	526
AgsI	TTSAA	2 cut(s)	341, 547
AluBI	AGCT	3 cut(s)	187, 238, 473
AluI	AGCT	3 cut(s)	187, 238, 473
AlwI	GGATC	4 cut(s)	152, 281, 381, 394
AoxI	GGCC	1 cut(s)	504
ApeKI	GCWGC	4 cut(s)	58, 299, 467, 470
ApoI	RAATTY	1 cut(s)	245
AspLEI	GCGC	1 cut(s)	183
AsuHPI	GGTGA	1 cut(s)	91
BalI	TGGCCA	1 cut(s)	506
BamHI	GGATCC	1 cut(s)	386
BbvI	GCAGC	4 cut(s)	45, 286, 454, 482
BfmI	CTRYAG	1 cut(s)	468
BglII	AGATCT	1 cut(s)	41
BisI	GCNGC	4 cut(s)	59, 300, 468, 471
BlsI	GCNGC	4 cut(s)	60, 301, 469, 472
BmiI	GGNNCC	1 cut(s)	388
BmsI	GCATC	1 cut(s)	271
BsaBI	GATNNNNATC	1 cut(s)	285
BsaJI	CCNNGG	2 cut(s)	53, 507
Bse1I	ACTGG	2 cut(s)	40, 356
Bse8I	GATNNNNATC	1 cut(s)	285
BseDI	CCNNGG	2 cut(s)	53, 507
BseJI	GATNNNNATC	1 cut(s)	285
BseNI	ACTGG	2 cut(s)	40, 356
BseXI	GCAGC	4 cut(s)	45, 286, 454, 482
BshFI	GGCC	1 cut(s)	506
BsiSI	CCGG	1 cut(s)	290
BsnI	GGCC	1 cut(s)	506
Bsp143I	GATC	5 cut(s)	13, 41, 157, 286, 386
BspANI	GGCC	1 cut(s)	506
BspHI	TCATGA	1 cut(s)	453
BspLI	GGNNCC	1 cut(s)	388
BspMAI	CTGCAG	1 cut(s)	472
BspPI	GGATC	4 cut(s)	152, 281, 381, 394
BspQI	GCTCTTC	1 cut(s)	21
BsrI	ACTGG	2 cut(s)	40, 356
BssECI	CCNNGG	2 cut(s)	53, 507
BssMI	GATC	5 cut(s)	13, 41, 157, 286, 386
BssT1I	CCWWGG	1 cut(s)	507
Bst4CI	ACNGT	1 cut(s)	370
Bst6I	CTCTTC	3 cut(s)	21, 105, 452
BstAPI	GCANNNNNTGC	2 cut(s)	149, 299
BstC8I	GCNNGC	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	5 cut(s)	16, 44, 160, 289, 389
BstMBI	GATC	5 cut(s)	13, 41, 157, 286, 386
BstMWI	GCNNNNNNNGC	7 cut(s)	28, 140, 149, 290, 299, 308, 476
BstNSI	RCATGY	1 cut(s)	530
BstSFI	CTRYAG	1 cut(s)	468
BstV1I	GCAGC	4 cut(s)	45, 286, 454, 482
BstX2I	RGATCY	3 cut(s)	41, 286, 386
BstYI	RGATCY	3 cut(s)	41, 286, 386
BsuRI	GGCC	1 cut(s)	506
BtsIMutI	CAGTG	1 cut(s)	366
Cac8I	GCNNGC	1 cut(s)	185
CciI	TCATGA	1 cut(s)	453
CfoI	GCGC	1 cut(s)	183
Csp6I	GTAC	1 cut(s)	96
CviAII	CATG	2 cut(s)	454, 527
CviJI	RGCY	6 cut(s)	58, 187, 238, 436, 473, 506
CviKI_1	RGCY	6 cut(s)	58, 187, 238, 436, 473, 506
CviQI	GTAC	1 cut(s)	96
DpnI	GATC	5 cut(s)	15, 43, 159, 288, 388
DpnII	GATC	5 cut(s)	13, 41, 157, 286, 386
EaeI	YGGCCR	1 cut(s)	504
Eam1104I	CTCTTC	3 cut(s)	21, 105, 452
EarI	CTCTTC	3 cut(s)	21, 105, 452
Eco130I	CCWWGG	1 cut(s)	507
Eco57I	CTGAAG	2 cut(s)	53, 495
EcoT14I	CCWWGG	1 cut(s)	507
ErhI	CCWWGG	1 cut(s)	507
FaeI	CATG	2 cut(s)	457, 530
FatI	CATG	2 cut(s)	453, 526
Fnu4HI	GCNGC	4 cut(s)	59, 300, 468, 471
Fsp4HI	GCNGC	4 cut(s)	59, 300, 468, 471
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	4 cut(s)	59, 300, 468, 471
HaeIII	GGCC	1 cut(s)	506
HapII	CCGG	1 cut(s)	290
HhaI	GCGC	1 cut(s)	183
Hin1II	CATG	2 cut(s)	457, 530
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HinfI	GANTC	2 cut(s)	82, 324
HpaII	CCGG	1 cut(s)	290
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	2 cut(s)	6, 211
Hpy188I	TCNGA	5 cut(s)	18, 54, 93, 362, 535
Hpy188III	TCNNGA	3 cut(s)	45, 71, 454
Hpy8I	GTNNAC	2 cut(s)	6, 211
HpyAV	CCTTC	3 cut(s)	77, 415, 541
HpyCH4III	ACNGT	1 cut(s)	370
HpyCH4V	TGCA	8 cut(s)	61, 216, 267, 284, 302, 380, 405, 470
HpyF10VI	GCNNNNNNNGC	7 cut(s)	28, 140, 149, 290, 299, 308, 476
Hsp92II	CATG	2 cut(s)	457, 530
HspAI	GCGC	1 cut(s)	181
Kzo9I	GATC	5 cut(s)	13, 41, 157, 286, 386
LguI	GCTCTTC	1 cut(s)	21
LpnPI	CCDG	9 cut(s)	21, 30, 56, 197, 224, 303, 369, 450, 488
Lsp1109I	GCAGC	4 cut(s)	45, 286, 454, 482
LweI	GCATC	1 cut(s)	271
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	5 cut(s)	15, 43, 159, 288, 388
MboI	GATC	5 cut(s)	13, 41, 157, 286, 386
MboII	GAAGA	4 cut(s)	38, 51, 122, 469
MfeI	CAATTG	2 cut(s)	268, 381
MflI	RGATCY	3 cut(s)	41, 286, 386
MlsI	TGGCCA	1 cut(s)	506
MluCI	AATT	8 cut(s)	126, 136, 200, 245, 268, 303, 373, 381
MluNI	TGGCCA	1 cut(s)	506
MlyI	GAGTC	1 cut(s)	76
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	6 cut(s)	12, 48, 106, 251, 314, 433
Mox20I	TGGCCA	1 cut(s)	506
MscI	TGGCCA	1 cut(s)	506
Msp20I	TGGCCA	1 cut(s)	506
MspA1I	CMGCKG	1 cut(s)	473
MspI	CCGG	1 cut(s)	290
MunI	CAATTG	2 cut(s)	268, 381
MwoI	GCNNNNNNNGC	7 cut(s)	28, 140, 149, 290, 299, 308, 476
NdeII	GATC	5 cut(s)	13, 41, 157, 286, 386
NlaIII	CATG	2 cut(s)	457, 530
NlaIV	GGNNCC	1 cut(s)	388
NmuCI	GTSAC	1 cut(s)	79
NspI	RCATGY	1 cut(s)	530
PagI	TCATGA	1 cut(s)	453
PciI	ACATGT	1 cut(s)	526
PciSI	GCTCTTC	1 cut(s)	21
PfeI	GAWTC	1 cut(s)	324
PkrI	GCNGC	4 cut(s)	60, 301, 469, 472
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
PscI	ACATGT	1 cut(s)	526
PsiI	TTATAA	1 cut(s)	431
PspN4I	GGNNCC	1 cut(s)	388
PstI	CTGCAG	1 cut(s)	472
PsuI	RGATCY	3 cut(s)	41, 286, 386
PvuII	CAGCTG	1 cut(s)	473
RsaI	GTAC	1 cut(s)	97
RsaNI	GTAC	1 cut(s)	96
SapI	GCTCTTC	1 cut(s)	21
SatI	GCNGC	4 cut(s)	59, 300, 468, 471
Sau3AI	GATC	5 cut(s)	13, 41, 157, 286, 386
SchI	GAGTC	1 cut(s)	76
SetI	ASST	6 cut(s)	69, 189, 240, 415, 444, 475
SfaNI	GCATC	1 cut(s)	271
SfcI	CTRYAG	1 cut(s)	468
Sse9I	AATT	8 cut(s)	126, 136, 200, 245, 268, 303, 373, 381
StyI	CCWWGG	1 cut(s)	507
TaaI	ACNGT	1 cut(s)	370
TaqI	TCGA	1 cut(s)	85
TasI	AATT	8 cut(s)	126, 136, 200, 245, 268, 303, 373, 381
TatI	WGTACW	1 cut(s)	95
TfiI	GAWTC	1 cut(s)	324
TscAI	CASTG	1 cut(s)	373
TseFI	GTSAC	1 cut(s)	79
TseI	GCWGC	4 cut(s)	58, 299, 467, 470
Tsp45I	GTSAC	1 cut(s)	79
TspDTI	ATGAA	2 cut(s)	123, 470
TspRI	CASTG	1 cut(s)	373
XapI	RAATTY	1 cut(s)	245
XceI	RCATGY	1 cut(s)	530
XcmI	CCANNNNNNNNNTGG	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.