Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006127

Physical Location & Seq

Genomic Coordinates Forward (+)

31971955 .. 31976848

Gene Structure 4894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00240300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGTTTACCAATGATAGGAGGCAAGAAGAGCGAACCGGAAGATATGGTACTTCAAGGCTGCAATACCTTCAGGAATTGGTGACTCAATTTCAGAGTACCACCTGTGAAGAATCTAAAGAGAAGATTGTTGCTAATCTGGCTAACTTTGCTTACGATCCTTACAATTATACGTATTTGCGCCAGCTCAATGTGGTGGAACTTTTTCTGGACTGCATAACAGAACCAAATGAGAAGCTTGTGGAATTTGGGTTGGGCGGAATCTGCAATTGTTGCCCTGATCCGGCCAATGCAGCAATTGTCACCCAGTGTGGCGGGATACCCCTTGTTATTCAATGTCTATCAAGCCCAGTTAGAAACACGGTGAACTATGCAATTGGATCACTTTATTATCTCTGCAACACATCTAATATGGAAGAGATTATGAAGCCAGAAGTGGTTGACGTCATGAAGAGATATGCTGCTGCTGAAGCAGCAAATGTCAGCTTTAGTAATCTAGCCAAAGCATTTTTGGACAAACATGTTCCCAAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0016020 GO:0016342 GO:0019897 GO:0019898 GO:0019899 GO:0019902 GO:0019903 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045294 GO:0045296 GO:0050839 GO:0071944 GO:0098796 GO:0098797

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

177

Amino Acids

19.9

Weight (kDa)

5.09

Isoelectric Point (pI)

39.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37290 AT5G37290 AT5G37290
fragaria_vesca	FvH4_5g26310 FvH4_5g27560 FvH4_5g27560
malus_domestica	MD09G1253300.v1.1
prunus_persica	Prupe.3G143200_v2.0.a1 Prupe.3G143200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0218931
rosa_laevigata	RLG00000000573 RLG00000002316 RLG00000014261
rosa_multiflora	Rmu_sc0003823.1_g000009
rosa_roxburghii	Rroxscaffold_3G00240300
rosa_rugosa	Rorug07G0179900 Rorug07G0180000 Rorug07G0180100 Rorug07G0344700
rosa_samantha	Rh7AG323200 Rh7AG499200 Rh7BG314200 Rh7CG339900 Rh7DG320300
rosa_wichuraiana	Rw6G011510 Rw7G027390 Rw7G042180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	444
AciI	CCGC	2 cut(s)	255, 312
AclWI	GGATC	3 cut(s)	149, 272, 385
AcoI	YGGCCR	1 cut(s)	282
AcsI	RAATTY	1 cut(s)	242
AcuI	CTGAAG	2 cut(s)	53, 486
AcyI	GRCGYC	1 cut(s)	441
AdeI	CACNNNGTG	1 cut(s)	306
AfaI	GTAC	2 cut(s)	49, 97
AfiI	CCNNNNNNNGG	2 cut(s)	15, 280
AflIII	ACRYGT	1 cut(s)	517
AgsI	TTSAA	2 cut(s)	54, 332
AluBI	AGCT	3 cut(s)	184, 235, 483
AluI	AGCT	3 cut(s)	184, 235, 483
AlwI	GGATC	3 cut(s)	149, 272, 385
AoxI	GGCC	1 cut(s)	282
ApeKI	GCWGC	5 cut(s)	58, 290, 458, 461, 470
ApoI	RAATTY	1 cut(s)	242
Asp700I	GAANNNNTTC	1 cut(s)	201
AspLEI	GCGC	1 cut(s)	180
AsuHPI	GGTGA	3 cut(s)	91, 292, 373
BarI	GAAGNNNNNNTAC	2 cut(s)	31, 63
BbvI	GCAGC	5 cut(s)	45, 302, 445, 448, 482
BciVI	GTATCC	1 cut(s)	309
BfaI	CTAG	1 cut(s)	494
BfuI	GTATCC	1 cut(s)	309
BisI	GCNGC	5 cut(s)	59, 291, 459, 462, 471
BlsI	GCNGC	5 cut(s)	60, 292, 460, 463, 472
BmrI	ACTGGG	2 cut(s)	298, 341
BmuI	ACTGGG	2 cut(s)	298, 341
BsaAI	YACGTR	1 cut(s)	171
BsaHI	GRCGYC	1 cut(s)	441
BsaWI	WCCGGW	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 280
Bse1I	ACTGG	2 cut(s)	304, 347
BseLI	CCNNNNNNNGG	2 cut(s)	15, 280
BseNI	ACTGG	2 cut(s)	304, 347
BseXI	GCAGC	5 cut(s)	45, 302, 445, 448, 482
BshFI	GGCC	1 cut(s)	284
BsiSI	CCGG	2 cut(s)	36, 281
BslI	CCNNNNNNNGG	2 cut(s)	15, 280
BsnI	GGCC	1 cut(s)	284
Bsp143I	GATC	3 cut(s)	154, 277, 377
BspACI	CCGC	2 cut(s)	255, 312
BspANI	GGCC	1 cut(s)	284
BspHI	TCATGA	1 cut(s)	444
BspPI	GGATC	3 cut(s)	149, 272, 385
BspQI	GCTCTTC	1 cut(s)	21
BsrI	ACTGG	2 cut(s)	304, 347
BssMI	GATC	3 cut(s)	154, 277, 377
BssNI	GRCGYC	1 cut(s)	441
Bst4CI	ACNGT	1 cut(s)	361
Bst6I	CTCTTC	3 cut(s)	21, 408, 443
BstACI	GRCGYC	1 cut(s)	441
BstAPI	GCANNNNNTGC	1 cut(s)	270
BstBAI	YACGTR	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	182
BstHHI	GCGC	1 cut(s)	180
BstKTI	GATC	3 cut(s)	157, 280, 380
BstMBI	GATC	3 cut(s)	154, 277, 377
BstMWI	GCNNNNNNNGC	8 cut(s)	28, 137, 146, 261, 270, 290, 467, 470
BstNSI	RCATGY	1 cut(s)	521
BstSNI	TACGTA	1 cut(s)	171
BstV1I	GCAGC	5 cut(s)	45, 302, 445, 448, 482
BsuI	GTATCC	1 cut(s)	309
BsuRI	GGCC	1 cut(s)	284
BtsIMutI	CAGTG	1 cut(s)	311
Cac8I	GCNNGC	1 cut(s)	182
CciI	TCATGA	1 cut(s)	444
CfoI	GCGC	1 cut(s)	180
Csp6I	GTAC	2 cut(s)	48, 96
CviAII	CATG	2 cut(s)	445, 518
CviJI	RGCY	9 cut(s)	58, 140, 184, 235, 284, 345, 427, 483, 497
CviKI_1	RGCY	9 cut(s)	58, 140, 184, 235, 284, 345, 427, 483, 497
CviQI	GTAC	2 cut(s)	48, 96
DpnI	GATC	3 cut(s)	156, 279, 379
DpnII	GATC	3 cut(s)	154, 277, 377
DraIII	CACNNNGTG	1 cut(s)	306
EaeI	YGGCCR	1 cut(s)	282
Eam1104I	CTCTTC	3 cut(s)	21, 408, 443
EarI	CTCTTC	3 cut(s)	21, 408, 443
EciI	GGCGGA	1 cut(s)	270
Eco105I	TACGTA	1 cut(s)	171
Eco57I	CTGAAG	2 cut(s)	53, 486
FaeI	CATG	2 cut(s)	448, 521
FaiI	YATR	9 cut(s)	45, 168, 215, 369, 410, 422, 446, 456, 519
FatI	CATG	2 cut(s)	444, 517
FauI	CCCGC	1 cut(s)	305
Fnu4HI	GCNGC	5 cut(s)	59, 291, 459, 462, 471
Fsp4HI	GCNGC	5 cut(s)	59, 291, 459, 462, 471
FspBI	CTAG	1 cut(s)	494
GlaI	GCGC	1 cut(s)	179
GluI	GCNGC	5 cut(s)	59, 291, 459, 462, 471
HaeIII	GGCC	1 cut(s)	284
HapII	CCGG	2 cut(s)	36, 281
HhaI	GCGC	1 cut(s)	180
Hin1I	GRCGYC	1 cut(s)	441
Hin1II	CATG	2 cut(s)	448, 521
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	3 cut(s)	82, 110, 258
HpaII	CCGG	2 cut(s)	36, 281
HphI	GGTGA	3 cut(s)	91, 292, 373
Hpy166II	GTNNAC	3 cut(s)	6, 364, 439
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	3 cut(s)	71, 206, 445
Hpy8I	GTNNAC	3 cut(s)	6, 364, 439
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4IV	ACGT	2 cut(s)	170, 441
HpyCH4V	TGCA	6 cut(s)	61, 213, 264, 290, 371, 396
HpyF10VI	GCNNNNNNNGC	8 cut(s)	28, 137, 146, 261, 270, 290, 467, 470
HpySE526I	ACGT	2 cut(s)	170, 441
Hsp92I	GRCGYC	1 cut(s)	441
Hsp92II	CATG	2 cut(s)	448, 521
HspAI	GCGC	1 cut(s)	178
Kzo9I	GATC	3 cut(s)	154, 277, 377
LguI	GCTCTTC	1 cut(s)	21
Lsp1109I	GCAGC	5 cut(s)	45, 302, 445, 448, 482
MaeI	CTAG	1 cut(s)	494
MaeII	ACGT	2 cut(s)	170, 441
MaeIII	GTNAC	2 cut(s)	79, 298
MalI	GATC	3 cut(s)	156, 279, 379
MboI	GATC	3 cut(s)	154, 277, 377
MboII	GAAGA	6 cut(s)	38, 51, 119, 133, 425, 460
MfeI	CAATTG	3 cut(s)	265, 294, 372
MluCI	AATT	8 cut(s)	74, 86, 163, 242, 265, 294, 372, 529
MlyI	GAGTC	1 cut(s)	76
MnlI	CCTC	1 cut(s)	12
MroXI	GAANNNNTTC	1 cut(s)	201
MseI	TTAA	1 cut(s)	532
MspI	CCGG	2 cut(s)	36, 281
MunI	CAATTG	3 cut(s)	265, 294, 372
MwoI	GCNNNNNNNGC	8 cut(s)	28, 137, 146, 261, 270, 290, 467, 470
NdeII	GATC	3 cut(s)	154, 277, 377
NlaIII	CATG	2 cut(s)	448, 521
NmuCI	GTSAC	2 cut(s)	79, 298
NspI	RCATGY	1 cut(s)	521
PagI	TCATGA	1 cut(s)	444
PciI	ACATGT	1 cut(s)	517
PciSI	GCTCTTC	1 cut(s)	21
PdmI	GAANNNNTTC	1 cut(s)	201
PfeI	GAWTC	2 cut(s)	110, 258
PkrI	GCNGC	5 cut(s)	60, 292, 460, 463, 472
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
Ppu21I	YACGTR	1 cut(s)	171
PscI	ACATGT	1 cut(s)	517
RsaI	GTAC	2 cut(s)	49, 97
RsaNI	GTAC	2 cut(s)	48, 96
SapI	GCTCTTC	1 cut(s)	21
SaqAI	TTAA	1 cut(s)	532
SatI	GCNGC	5 cut(s)	59, 291, 459, 462, 471
Sau3AI	GATC	3 cut(s)	154, 277, 377
SchI	GAGTC	1 cut(s)	76
SetI	ASST	7 cut(s)	69, 104, 173, 186, 237, 444, 485
SnaBI	TACGTA	1 cut(s)	171
Sse9I	AATT	8 cut(s)	74, 86, 163, 242, 265, 294, 372, 529
SsiI	CCGC	2 cut(s)	255, 312
SspMI	CTAG	1 cut(s)	494
TaaI	ACNGT	1 cut(s)	361
TaiI	ACGT	2 cut(s)	173, 444
TasI	AATT	8 cut(s)	74, 86, 163, 242, 265, 294, 372, 529
TfiI	GAWTC	2 cut(s)	110, 258
Tru1I	TTAA	1 cut(s)	532
Tru9I	TTAA	1 cut(s)	532
TscAI	CASTG	1 cut(s)	311
TseFI	GTSAC	2 cut(s)	79, 298
TseI	GCWGC	5 cut(s)	58, 290, 458, 461, 470
Tsp45I	GTSAC	2 cut(s)	79, 298
TspDTI	ATGAA	2 cut(s)	437, 461
TspRI	CASTG	1 cut(s)	311
XapI	RAATTY	1 cut(s)	242
XceI	RCATGY	1 cut(s)	521
XcmI	CCANNNNNNNNNTGG	1 cut(s)	505
XmnI	GAANNNNTTC	1 cut(s)	201
XspI	CTAG	1 cut(s)	494
ZraI	GACGTC	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.