Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006127

Physical Location & Seq

Genomic Coordinates Forward (+)

32127996 .. 32134634

Gene Structure 6639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002316

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGAGTCTGCTTCTCCTCGTGAAGCCTGTCTGCCACCCTCCTCGAGGTCGTGGTTCCCCACTGTTCAACCTGTGGGCTGTGGGCAAAAGGAGTTCTTGCGATGGTGGCGGGGCAGGTTTGGGGAATGCAACCGGCAACGGAGGATTCTGGTTCCGATCTGGGAAGACGTCCGACATTGGCTGGAGGCTGGGTCCGATTTCTGAGTGGCAAGCCACTCCTCCTCCTGGTAGTGGTCGATCATCGATCTCCGACATGCTGACTATATGGGCAGGGCTGTGTTGGAATAAGGCTGGAAGCTTGGGGTTCGGAGCCGACTCCATGGCTGCTGGAAATGAAGAGGCAAAATCTCTCCATGTCAAGTTGTGCTCTGGCAACGCACGAGCAGACTTAGGAAGATATGGTACTTCAAGGCTGCAATACCTTCAGGAATTGGTGACTCAATTTCAGAGTACCACCTGTGAAGAATCAAAAGAGAAGATTGTTGCTAATCTGGCTAACTTTGCTTATGATCCTTACAATTATACCTATTTGCGCCAGCTCAATGTGGTGGAACTTTTTCTGGACTGCATAACAGAACCAAATGAGAAGCTTGTGGAATTTGGGTTAGGCGGAATCTGCAATTGTTGCCCTGATCCGGCCAATGCAGCAATTGTCACCCAGTGTGGCGGGATACCCCTTGTTATTCAATGTCTATCAAGCCCTGTTAGAAACACCGTGAACTATGCAATTGGATCACTTTATTATCTCTGCAACACATCTAATATGGAAGAGATTATGAAGCCGGAAGTGGTTGATGTCATGAAGAGATATGCTGCTGCTGAAGCAGCAAATGTCAGCTTTAGTAATCTAGCCAAAGCATTTTTGGACAAACATGTTTCCAAAAATGAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0016020 GO:0016342 GO:0019897 GO:0019898 GO:0019899 GO:0019902 GO:0019903 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045294 GO:0045296 GO:0050839 GO:0071944 GO:0098796 GO:0098797

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

298

Amino Acids

32.03

Weight (kDa)

6.8

Isoelectric Point (pI)

39.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37290 AT5G37290 AT5G37290
fragaria_vesca	FvH4_5g26310 FvH4_5g27560 FvH4_5g27560
malus_domestica	MD09G1253300.v1.1
prunus_persica	Prupe.3G143200_v2.0.a1 Prupe.3G143200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0218931
rosa_laevigata	RLG00000000573 RLG00000002316 RLG00000014261
rosa_multiflora	Rmu_sc0003823.1_g000009
rosa_roxburghii	Rroxscaffold_3G00240300
rosa_rugosa	Rorug07G0179900 Rorug07G0180000 Rorug07G0180100 Rorug07G0344700
rosa_samantha	Rh7AG323200 Rh7AG499200 Rh7BG314200 Rh7CG339900 Rh7DG320300
rosa_wichuraiana	Rw6G011510 Rw7G027390 Rw7G042180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	170
AbsI	CCTCGAGG	1 cut(s)	42
Acc36I	ACCTGC	1 cut(s)	104
AciI	CCGC	3 cut(s)	108, 609, 666
AclWI	GGATC	3 cut(s)	503, 626, 739
AcoI	YGGCCR	1 cut(s)	636
AcsI	RAATTY	1 cut(s)	596
AcuI	CTGAAG	2 cut(s)	407, 840
AcyI	GRCGYC	1 cut(s)	167
AdeI	CACNNNGTG	1 cut(s)	660
AfaI	GTAC	2 cut(s)	403, 451
AfiI	CCNNNNNNNGG	4 cut(s)	44, 224, 230, 634
AflIII	ACRYGT	1 cut(s)	871
AgsI	TTSAA	3 cut(s)	67, 408, 686
AjnI	CCWGG	1 cut(s)	223
AluBI	AGCT	4 cut(s)	297, 538, 589, 837
AluI	AGCT	4 cut(s)	297, 538, 589, 837
Alw21I	GWGCWC	1 cut(s)	368
AlwI	GGATC	3 cut(s)	503, 626, 739
Ama87I	CYCGRG	1 cut(s)	42
AoxI	GGCC	1 cut(s)	636
ApeKI	GCWGC	6 cut(s)	323, 412, 644, 812, 815, 824
ApoI	RAATTY	1 cut(s)	596
Asp700I	GAANNNNTTC	1 cut(s)	555
AspLEI	GCGC	1 cut(s)	534
AspS9I	GGNCC	1 cut(s)	191
AsuHPI	GGTGA	2 cut(s)	445, 646
AvaI	CYCGRG	1 cut(s)	42
AvaII	GGWCC	1 cut(s)	191
BarI	GAAGNNNNNNTAC	2 cut(s)	385, 417
BauI	CACGAG	2 cut(s)	17, 378
BbsI	GAAGAC	1 cut(s)	170
Bbv12I	GWGCWC	1 cut(s)	368
BbvI	GCAGC	6 cut(s)	310, 399, 656, 799, 802, 836
BccI	CCATC	1 cut(s)	95
BciT130I	CCWGG	1 cut(s)	225
BciVI	GTATCC	1 cut(s)	663
BfaI	CTAG	1 cut(s)	848
BfuAI	ACCTGC	1 cut(s)	104
BfuI	GTATCC	1 cut(s)	663
BisI	GCNGC	6 cut(s)	324, 413, 645, 813, 816, 825
BlsI	GCNGC	6 cut(s)	325, 414, 646, 814, 817, 826
Bme1390I	CCNGG	1 cut(s)	225
Bme18I	GGWCC	1 cut(s)	191
BmeT110I	CYCGRG	1 cut(s)	42
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	4 cut(s)	55, 152, 192, 310
BmrFI	CCNGG	1 cut(s)	225
BmrI	ACTGGG	1 cut(s)	652
BmuI	ACTGGG	1 cut(s)	652
BpiI	GAAGAC	1 cut(s)	170
BpmI	CTGGAG	1 cut(s)	202
Bsa29I	ATCGAT	1 cut(s)	242
BsaHI	GRCGYC	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	318
BsaXI	ACNNNNNCTCC	4 cut(s)	175, 205, 205, 235
Bsc4I	CCNNNNNNNGG	4 cut(s)	44, 224, 230, 634
Bse118I	RCCGGY	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	658
BseBI	CCWGG	1 cut(s)	225
BseCI	ATCGAT	1 cut(s)	242
BseDI	CCNNGG	1 cut(s)	318
BseLI	CCNNNNNNNGG	4 cut(s)	44, 224, 230, 634
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	1 cut(s)	658
BseRI	GAGGAG	4 cut(s)	5, 30, 207, 210
BseXI	GCAGC	6 cut(s)	310, 399, 656, 799, 802, 836
BseYI	CCCAGC	1 cut(s)	187
BshFI	GGCC	1 cut(s)	638
BshVI	ATCGAT	1 cut(s)	242
BsiHKAI	GWGCWC	1 cut(s)	368
BsiHKCI	CYCGRG	1 cut(s)	42
BsiSI	CCGG	3 cut(s)	132, 635, 782
BslI	CCNNNNNNNGG	4 cut(s)	44, 224, 230, 634
BsmI	GAATGC	1 cut(s)	130
BsnI	GGCC	1 cut(s)	638
BsoBI	CYCGRG	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	368
Bsp143I	GATC	6 cut(s)	155, 236, 243, 508, 631, 731
Bsp19I	CCATGG	1 cut(s)	318
BspACI	CCGC	3 cut(s)	108, 609, 666
BspANI	GGCC	1 cut(s)	638
BspCNI	CTCAG	1 cut(s)	193
BspDI	ATCGAT	1 cut(s)	242
BspHI	TCATGA	1 cut(s)	798
BspLI	GGNNCC	4 cut(s)	55, 152, 192, 310
BspMI	ACCTGC	1 cut(s)	104
BspPI	GGATC	3 cut(s)	503, 626, 739
BsrFI	RCCGGY	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	658
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	6 cut(s)	155, 236, 243, 508, 631, 731
BssNI	GRCGYC	1 cut(s)	167
BssSI	CACGAG	2 cut(s)	17, 378
BssT1I	CCWWGG	1 cut(s)	318
Bst2BI	CACGAG	2 cut(s)	17, 378
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	2 cut(s)	63, 715
Bst6I	CTCTTC	3 cut(s)	330, 762, 797
BstACI	GRCGYC	1 cut(s)	167
BstAPI	GCANNNNNTGC	1 cut(s)	624
BstC8I	GCNNGC	2 cut(s)	210, 536
BstDEI	CTNAG	2 cut(s)	201, 388
BstDSI	CCRYGG	1 cut(s)	318
BstENI	CCTNNNNNAGG	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	534
BstKTI	GATC	6 cut(s)	158, 239, 246, 511, 634, 734
BstMBI	GATC	6 cut(s)	155, 236, 243, 508, 631, 731
BstMWI	GCNNNNNNNGC	8 cut(s)	105, 491, 500, 615, 624, 644, 821, 824
BstNI	CCWGG	1 cut(s)	225
BstNSI	RCATGY	2 cut(s)	256, 875
BstSCI	CCNGG	1 cut(s)	223
BstV1I	GCAGC	6 cut(s)	310, 399, 656, 799, 802, 836
BstV2I	GAAGAC	1 cut(s)	170
Bsu15I	ATCGAT	1 cut(s)	242
BsuI	GTATCC	1 cut(s)	663
BsuRI	GGCC	1 cut(s)	638
BsuTUI	ATCGAT	1 cut(s)	242
BtgI	CCRYGG	1 cut(s)	318
BtgZI	GCGATG	1 cut(s)	114
BtsIMutI	CAGTG	2 cut(s)	59, 665
BveI	ACCTGC	1 cut(s)	104
Cac8I	GCNNGC	2 cut(s)	210, 536
CciI	TCATGA	1 cut(s)	798
CfoI	GCGC	1 cut(s)	534
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	191
ClaI	ATCGAT	1 cut(s)	242
Csp6I	GTAC	2 cut(s)	402, 450
CviAII	CATG	5 cut(s)	253, 319, 353, 799, 872
CviQI	GTAC	2 cut(s)	402, 450
DdeI	CTNAG	2 cut(s)	201, 388
DpnI	GATC	6 cut(s)	157, 238, 245, 510, 633, 733
DpnII	GATC	6 cut(s)	155, 236, 243, 508, 631, 731
DraIII	CACNNNGTG	1 cut(s)	660
EaeI	YGGCCR	1 cut(s)	636
Eam1104I	CTCTTC	3 cut(s)	330, 762, 797
EarI	CTCTTC	3 cut(s)	330, 762, 797
EciI	GGCGGA	1 cut(s)	624
Eco130I	CCWWGG	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	191
Eco57I	CTGAAG	2 cut(s)	407, 840
Eco88I	CYCGRG	1 cut(s)	42
EcoNI	CCTNNNNNAGG	1 cut(s)	42
EcoRII	CCWGG	1 cut(s)	223
EcoT14I	CCWWGG	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	5 cut(s)	256, 322, 356, 802, 875
FalI	AAGNNNNNCTT	2 cut(s)	79, 111
FatI	CATG	5 cut(s)	252, 318, 352, 798, 871
FauI	CCCGC	2 cut(s)	101, 659
Fnu4HI	GCNGC	6 cut(s)	324, 413, 645, 813, 816, 825
Fsp4HI	GCNGC	6 cut(s)	324, 413, 645, 813, 816, 825
FspBI	CTAG	1 cut(s)	848
GlaI	GCGC	1 cut(s)	533
GluI	GCNGC	6 cut(s)	324, 413, 645, 813, 816, 825
GsaI	CCCAGC	1 cut(s)	191
GsuI	CTGGAG	1 cut(s)	202
HaeIII	GGCC	1 cut(s)	638
HapII	CCGG	3 cut(s)	132, 635, 782
HhaI	GCGC	1 cut(s)	534
Hin1I	GRCGYC	1 cut(s)	167
Hin1II	CATG	5 cut(s)	256, 322, 356, 802, 875
Hin6I	GCGC	1 cut(s)	532
HinP1I	GCGC	1 cut(s)	532
HindIII	AAGCTT	2 cut(s)	295, 587
HinfI	GANTC	6 cut(s)	4, 144, 314, 436, 464, 612
HpaII	CCGG	3 cut(s)	132, 635, 782
HphI	GGTGA	2 cut(s)	445, 646
Hpy166II	GTNNAC	1 cut(s)	718
Hpy188I	TCNGA	7 cut(s)	155, 172, 195, 202, 250, 308, 447
Hpy188III	TCNNGA	4 cut(s)	19, 425, 560, 799
Hpy8I	GTNNAC	1 cut(s)	718
HpyAV	CCTTC	1 cut(s)	431
HpyCH4III	ACNGT	2 cut(s)	63, 715
HpyCH4IV	ACGT	1 cut(s)	167
HpyCH4V	TGCA	7 cut(s)	128, 415, 567, 618, 644, 725, 750
HpyF10VI	GCNNNNNNNGC	8 cut(s)	105, 491, 500, 615, 624, 644, 821, 824
HpyF3I	CTNAG	2 cut(s)	201, 388
HpySE526I	ACGT	1 cut(s)	167
Hsp92I	GRCGYC	1 cut(s)	167
Hsp92II	CATG	5 cut(s)	256, 322, 356, 802, 875
HspAI	GCGC	1 cut(s)	532
Kzo9I	GATC	6 cut(s)	155, 236, 243, 508, 631, 731
LmnI	GCTCC	1 cut(s)	308
Lsp1109I	GCAGC	6 cut(s)	310, 399, 656, 799, 802, 836
MaeI	CTAG	1 cut(s)	848
MaeII	ACGT	1 cut(s)	167
MaeIII	GTNAC	2 cut(s)	433, 652
MalI	GATC	6 cut(s)	157, 238, 245, 510, 633, 733
MboI	GATC	6 cut(s)	155, 236, 243, 508, 631, 731
MboII	GAAGA	7 cut(s)	175, 347, 405, 473, 487, 779, 814
MfeI	CAATTG	3 cut(s)	619, 648, 726
MhlI	GDGCHC	1 cut(s)	368
MluCI	AATT	7 cut(s)	428, 440, 517, 596, 619, 648, 726
MlyI	GAGTC	3 cut(s)	13, 308, 430
MmeI	TCCRAC	3 cut(s)	195, 260, 273
MnlI	CCTC	9 cut(s)	26, 38, 48, 51, 134, 177, 228, 231, 331
MroXI	GAANNNNTTC	1 cut(s)	555
MspI	CCGG	3 cut(s)	132, 635, 782
MspR9I	CCNGG	1 cut(s)	225
MunI	CAATTG	3 cut(s)	619, 648, 726
Mva1269I	GAATGC	1 cut(s)	130
MvaI	CCWGG	1 cut(s)	225
MwoI	GCNNNNNNNGC	8 cut(s)	105, 491, 500, 615, 624, 644, 821, 824
NcoI	CCATGG	1 cut(s)	318
NdeII	GATC	6 cut(s)	155, 236, 243, 508, 631, 731
NlaIII	CATG	5 cut(s)	256, 322, 356, 802, 875
NlaIV	GGNNCC	4 cut(s)	55, 152, 192, 310
NmuCI	GTSAC	2 cut(s)	433, 652
NspI	RCATGY	2 cut(s)	256, 875
PaeR7I	CTCGAG	1 cut(s)	42
PagI	TCATGA	1 cut(s)	798
PciI	ACATGT	1 cut(s)	871
PctI	GAATGC	1 cut(s)	130
PdmI	GAANNNNTTC	1 cut(s)	555
PfeI	GAWTC	3 cut(s)	144, 464, 612
PkrI	GCNGC	6 cut(s)	325, 414, 646, 814, 817, 826
PleI	GAGTC	3 cut(s)	12, 308, 430
PpsI	GAGTC	3 cut(s)	12, 308, 430
PscI	ACATGT	1 cut(s)	871
Psp6I	CCWGG	1 cut(s)	223
PspFI	CCCAGC	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	4 cut(s)	55, 152, 192, 310
PspPI	GGNCC	1 cut(s)	191
PspXI	VCTCGAGB	1 cut(s)	42
RsaI	GTAC	2 cut(s)	403, 451
RsaNI	GTAC	2 cut(s)	402, 450
SatI	GCNGC	6 cut(s)	324, 413, 645, 813, 816, 825
Sau3AI	GATC	6 cut(s)	155, 236, 243, 508, 631, 731
Sau96I	GGNCC	1 cut(s)	191
SchI	GAGTC	3 cut(s)	13, 308, 430
ScrFI	CCNGG	1 cut(s)	225
SduI	GDGCHC	1 cut(s)	368
Sfr274I	CTCGAG	1 cut(s)	42
SinI	GGWCC	1 cut(s)	191
SlaI	CTCGAG	1 cut(s)	42
SmlI	CTYRAG	1 cut(s)	42
SmoI	CTYRAG	1 cut(s)	42
Sse9I	AATT	7 cut(s)	428, 440, 517, 596, 619, 648, 726
SsiI	CCGC	3 cut(s)	108, 609, 666
SspMI	CTAG	1 cut(s)	848
StyD4I	CCNGG	1 cut(s)	223
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	2 cut(s)	63, 715
TaiI	ACGT	1 cut(s)	170
TaqI	TCGA	3 cut(s)	43, 235, 242
TasI	AATT	7 cut(s)	428, 440, 517, 596, 619, 648, 726
TfiI	GAWTC	3 cut(s)	144, 464, 612
TscAI	CASTG	2 cut(s)	66, 665
TseFI	GTSAC	2 cut(s)	433, 652
TseI	GCWGC	6 cut(s)	323, 412, 644, 812, 815, 824
Tsp45I	GTSAC	2 cut(s)	433, 652
TspDTI	ATGAA	3 cut(s)	348, 791, 815
TspGWI	ACGGA	1 cut(s)	153
TspRI	CASTG	2 cut(s)	66, 665
VpaK11BI	GGWCC	1 cut(s)	191
XagI	CCTNNNNNAGG	1 cut(s)	42
XapI	RAATTY	1 cut(s)	596
XceI	RCATGY	2 cut(s)	256, 875
XcmI	CCANNNNNNNNNTGG	1 cut(s)	859
XhoI	CTCGAG	1 cut(s)	42
XmnI	GAANNNNTTC	1 cut(s)	555
XspI	CTAG	1 cut(s)	848
ZraI	GACGTC	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.