Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0006127

Physical Location & Seq

Genomic Coordinates Reverse (-)

18802532 .. 18805159

Gene Structure 2628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g27560.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTTTACCAATGATAGGAGGCAAGAAGAGCGAACTGGAAGATATGGTACGTCAAGGCTGCAATACCTTCAGGAAGTGGTGACTCAATTTCAGAGTACTACCAGTGAAGAATCAAAAGAGAAGATTGTTGCTAATCTGGCCAACTTTGCTTATGATCCTTACAATTATACCTATTTGCGCCAGCTCAATGTGGTGGAACTTTTTCTGGACTGCATAACAGAACCAAATGAGAAGCTTGTGGAATTTGGGGTAGGCGGAATTTGCAATTGTTGCCCTGATCCAGCCAATGCAGCAATTGTCACCAAGAGTGGTGGGATACCCCTTGTTATTCAATGTCTATCAAGCCCTGTTAGAAACACCATGAACTATGCAATTGGATCACTTTATTATCTCTGCAACACATCTAATAAGGAAGAGATTATGAAGCCGGAAGTTGTTGACATCATGAAGAGATATGCTGCTGCTGAAGGAGCAAGTGTCAACTTCAGTAATCTGGCCAAGGCATTTTTGGACAAACATGTTTCCGAAAATGAACTTGGAGACAATTGTAGGTCTGTGGTTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0016020 GO:0016342 GO:0019897 GO:0019898 GO:0019899 GO:0019902 GO:0019903 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045294 GO:0045296 GO:0050839 GO:0071944 GO:0098796 GO:0098797

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

189

Amino Acids

21.09

Weight (kDa)

5.16

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37290 AT5G37290 AT5G37290
fragaria_vesca	FvH4_5g26310 FvH4_5g27560 FvH4_5g27560
malus_domestica	MD09G1253300.v1.1
prunus_persica	Prupe.3G143200_v2.0.a1 Prupe.3G143200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0218931
rosa_laevigata	RLG00000000573 RLG00000002316 RLG00000014261
rosa_multiflora	Rmu_sc0003823.1_g000009
rosa_roxburghii	Rroxscaffold_3G00240300
rosa_rugosa	Rorug07G0179900 Rorug07G0180000 Rorug07G0180100 Rorug07G0344700
rosa_samantha	Rh7AG323200 Rh7AG499200 Rh7BG314200 Rh7CG339900 Rh7DG320300
rosa_wichuraiana	Rw6G011510 Rw7G027390 Rw7G042180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	255
AclWI	GGATC	3 cut(s)	149, 272, 385
AcoI	YGGCCR	2 cut(s)	138, 495
AcsI	RAATTY	2 cut(s)	242, 258
AcuI	CTGAAG	3 cut(s)	53, 469, 486
AfaI	GTAC	2 cut(s)	49, 97
AfiI	CCNNNNNNNGG	1 cut(s)	15
AflIII	ACRYGT	1 cut(s)	517
AgsI	TTSAA	1 cut(s)	332
AjuI	GAANNNNNNNTTGG	2 cut(s)	519, 551
AluBI	AGCT	2 cut(s)	184, 235
AluI	AGCT	2 cut(s)	184, 235
Alw26I	GTCTC	1 cut(s)	534
AlwI	GGATC	3 cut(s)	149, 272, 385
AoxI	GGCC	2 cut(s)	138, 495
ApeKI	GCWGC	4 cut(s)	58, 290, 458, 461
ApoI	RAATTY	2 cut(s)	242, 258
Asp700I	GAANNNNTTC	1 cut(s)	201
AspLEI	GCGC	1 cut(s)	180
AsuHPI	GGTGA	2 cut(s)	91, 292
BalI	TGGCCA	2 cut(s)	140, 497
BarI	GAAGNNNNNNTAC	2 cut(s)	31, 63
BbvI	GCAGC	4 cut(s)	45, 302, 445, 448
BciVI	GTATCC	1 cut(s)	309
BcoDI	GTCTC	1 cut(s)	534
BfuI	GTATCC	1 cut(s)	309
BisI	GCNGC	4 cut(s)	59, 291, 459, 462
BlsI	GCNGC	4 cut(s)	60, 292, 460, 463
BmcAI	AGTACT	1 cut(s)	97
BsaJI	CCNNGG	1 cut(s)	498
BsaXI	ACNNNNNCTCC	2 cut(s)	462, 492
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
Bse1I	ACTGG	2 cut(s)	40, 102
BseDI	CCNNGG	1 cut(s)	498
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseNI	ACTGG	2 cut(s)	40, 102
BseXI	GCAGC	4 cut(s)	45, 302, 445, 448
BshFI	GGCC	2 cut(s)	140, 497
BsiSI	CCGG	1 cut(s)	428
BslI	CCNNNNNNNGG	1 cut(s)	15
BsmAI	GTCTC	1 cut(s)	534
BsnI	GGCC	2 cut(s)	140, 497
Bsp143I	GATC	3 cut(s)	154, 277, 377
BspACI	CCGC	1 cut(s)	255
BspANI	GGCC	2 cut(s)	140, 497
BspHI	TCATGA	1 cut(s)	444
BspPI	GGATC	3 cut(s)	149, 272, 385
BspQI	GCTCTTC	1 cut(s)	21
BsrI	ACTGG	2 cut(s)	40, 102
BssECI	CCNNGG	1 cut(s)	498
BssMI	GATC	3 cut(s)	154, 277, 377
BssT1I	CCWWGG	1 cut(s)	498
Bst6I	CTCTTC	3 cut(s)	21, 408, 443
BstAPI	GCANNNNNTGC	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	182
BstHHI	GCGC	1 cut(s)	180
BstKTI	GATC	3 cut(s)	157, 280, 380
BstMAI	GTCTC	1 cut(s)	534
BstMBI	GATC	3 cut(s)	154, 277, 377
BstMWI	GCNNNNNNNGC	7 cut(s)	28, 137, 146, 261, 270, 290, 470
BstNSI	RCATGY	1 cut(s)	521
BstV1I	GCAGC	4 cut(s)	45, 302, 445, 448
BsuI	GTATCC	1 cut(s)	309
BsuRI	GGCC	2 cut(s)	140, 497
BtsIMutI	CAGTG	1 cut(s)	109
Cac8I	GCNNGC	1 cut(s)	182
CciI	TCATGA	1 cut(s)	444
CfoI	GCGC	1 cut(s)	180
Csp6I	GTAC	2 cut(s)	48, 96
CspCI	CAANNNNNGTGG	2 cut(s)	292, 327
CviAII	CATG	3 cut(s)	361, 445, 518
CviJI	RGCY	8 cut(s)	58, 140, 184, 235, 284, 345, 427, 497
CviKI_1	RGCY	8 cut(s)	58, 140, 184, 235, 284, 345, 427, 497
CviQI	GTAC	2 cut(s)	48, 96
DpnI	GATC	3 cut(s)	156, 279, 379
DpnII	GATC	3 cut(s)	154, 277, 377
EaeI	YGGCCR	2 cut(s)	138, 495
Eam1104I	CTCTTC	3 cut(s)	21, 408, 443
EarI	CTCTTC	3 cut(s)	21, 408, 443
EciI	GGCGGA	1 cut(s)	270
Eco130I	CCWWGG	1 cut(s)	498
Eco57I	CTGAAG	3 cut(s)	53, 469, 486
EcoT14I	CCWWGG	1 cut(s)	498
ErhI	CCWWGG	1 cut(s)	498
FaeI	CATG	3 cut(s)	364, 448, 521
FatI	CATG	3 cut(s)	360, 444, 517
Fnu4HI	GCNGC	4 cut(s)	59, 291, 459, 462
Fsp4HI	GCNGC	4 cut(s)	59, 291, 459, 462
GlaI	GCGC	1 cut(s)	179
GluI	GCNGC	4 cut(s)	59, 291, 459, 462
HaeIII	GGCC	2 cut(s)	140, 497
HapII	CCGG	1 cut(s)	428
HhaI	GCGC	1 cut(s)	180
Hin1II	CATG	3 cut(s)	364, 448, 521
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HincII	GTYRAC	2 cut(s)	439, 481
HindII	GTYRAC	2 cut(s)	439, 481
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	2 cut(s)	82, 110
HpaII	CCGG	1 cut(s)	428
HphI	GGTGA	2 cut(s)	91, 292
Hpy166II	GTNNAC	3 cut(s)	6, 439, 481
Hpy188I	TCNGA	2 cut(s)	93, 526
Hpy188III	TCNNGA	3 cut(s)	71, 206, 445
Hpy8I	GTNNAC	3 cut(s)	6, 439, 481
HpyAV	CCTTC	2 cut(s)	77, 461
HpyCH4IV	ACGT	1 cut(s)	50
HpyCH4V	TGCA	6 cut(s)	61, 213, 264, 290, 371, 396
HpyF10VI	GCNNNNNNNGC	7 cut(s)	28, 137, 146, 261, 270, 290, 470
HpySE526I	ACGT	1 cut(s)	50
Hsp92II	CATG	3 cut(s)	364, 448, 521
HspAI	GCGC	1 cut(s)	178
Kzo9I	GATC	3 cut(s)	154, 277, 377
LguI	GCTCTTC	1 cut(s)	21
LmnI	GCTCC	1 cut(s)	470
Lsp1109I	GCAGC	4 cut(s)	45, 302, 445, 448
MaeII	ACGT	1 cut(s)	50
MaeIII	GTNAC	2 cut(s)	79, 298
MalI	GATC	3 cut(s)	156, 279, 379
MboI	GATC	3 cut(s)	154, 277, 377
MboII	GAAGA	6 cut(s)	38, 51, 119, 133, 425, 460
MfeI	CAATTG	4 cut(s)	265, 294, 372, 544
MlsI	TGGCCA	2 cut(s)	140, 497
MluCI	AATT	8 cut(s)	86, 163, 242, 258, 265, 294, 372, 544
MluNI	TGGCCA	2 cut(s)	140, 497
MlyI	GAGTC	1 cut(s)	76
MnlI	CCTC	1 cut(s)	12
Mox20I	TGGCCA	2 cut(s)	140, 497
MroXI	GAANNNNTTC	1 cut(s)	201
MscI	TGGCCA	2 cut(s)	140, 497
Msp20I	TGGCCA	2 cut(s)	140, 497
MspI	CCGG	1 cut(s)	428
MunI	CAATTG	4 cut(s)	265, 294, 372, 544
MwoI	GCNNNNNNNGC	7 cut(s)	28, 137, 146, 261, 270, 290, 470
NdeII	GATC	3 cut(s)	154, 277, 377
NlaIII	CATG	3 cut(s)	364, 448, 521
NmuCI	GTSAC	2 cut(s)	79, 298
NspI	RCATGY	1 cut(s)	521
PagI	TCATGA	1 cut(s)	444
PciI	ACATGT	1 cut(s)	517
PciSI	GCTCTTC	1 cut(s)	21
PdmI	GAANNNNTTC	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	110
PkrI	GCNGC	4 cut(s)	60, 292, 460, 463
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
PscI	ACATGT	1 cut(s)	517
RsaI	GTAC	2 cut(s)	49, 97
RsaNI	GTAC	2 cut(s)	48, 96
SapI	GCTCTTC	1 cut(s)	21
SatI	GCNGC	4 cut(s)	59, 291, 459, 462
Sau3AI	GATC	3 cut(s)	154, 277, 377
ScaI	AGTACT	1 cut(s)	97
SchI	GAGTC	1 cut(s)	76
SetI	ASST	6 cut(s)	53, 69, 173, 186, 237, 554
Sse9I	AATT	8 cut(s)	86, 163, 242, 258, 265, 294, 372, 544
SsiI	CCGC	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	498
TaiI	ACGT	1 cut(s)	53
TasI	AATT	8 cut(s)	86, 163, 242, 258, 265, 294, 372, 544
TatI	WGTACW	1 cut(s)	95
TfiI	GAWTC	1 cut(s)	110
TscAI	CASTG	1 cut(s)	109
TseFI	GTSAC	2 cut(s)	79, 298
TseI	GCWGC	4 cut(s)	58, 290, 458, 461
Tsp45I	GTSAC	2 cut(s)	79, 298
TspDTI	ATGAA	4 cut(s)	377, 437, 461, 546
TspRI	CASTG	1 cut(s)	109
XapI	RAATTY	2 cut(s)	242, 258
XceI	RCATGY	1 cut(s)	521
XcmI	CCANNNNNNNNNTGG	1 cut(s)	505
XmnI	GAANNNNTTC	1 cut(s)	201
ZrmI	AGTACT	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.