Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006127

Physical Location & Seq

Genomic Coordinates Reverse (-)

15025959 .. 15028460

Gene Structure 2502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0180100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2502 bp

ATGGATATCCTTAGTTGGAATTGCAGGGGGATCTGCAATGACACAACAAGGAGGGCGTTGAAGGATTTAATCGTTCAGAATCGTCCTCAGATCGTCTTTCTCTGTGAGACAAAAAGCAGTAGCGTTTCTGGCTTCCGTGATCTACATCATGCGCTAGGATTTCCACACTCAAAGGAGGTGTTGAGTGTTGGGCAATCAGGAGGGTTAGGGATGTTCTGGAATGATGAAGTTAATGTGCAGGTTCGTACTTTTTCTGCCCACCATATTGATCTGGAGATTGGTGGTGGTCCGGGAGATCCGAGATGGAGGCTAACTGGGTTTTATAGGTATCCTACAACGGCGGAGAGAGATAAGTCTTGGAAATTGCTCAGAGACCTCCGTGATCTGGATTCCTTGCCTTGGGTTGTTATTGGGGATTTCAATGAAATTCTTAATAATAGTGAGAAGTTGGATGGACCTCCAAGAGCAGAGCGACAAATGCGTGGGTTTCGTGAAGCCCTAGGATATGGGGACCTTCTTGATCTAGGGTTTCAAGGAGTGATGTCTACGTGGTGGAATTCTGAGACAAGACTCAGACTGGATCGTGCGGTCTGCACCCTTTGTTGGTACGATATCTTTGGTTGTGCTCGAGTCCGACATTTACCGCCGAGTGATTCAGATCACGTCCCAATATTGCTGCAGGCTAGTGCAGTTCAGTTGCCCCAGCAATCACGTCGGCATTGCTTCAAATTCGAAGCGTTTTGGCTTCAGCATGGTGAGTGTGATGGGGTAGTGAAGAGTGCATGGGCTACTGACGTTGTTGGTAGCTCTATGTATTCTGTTGTTAAGAAAATTGAGCACACTCGCCTGCGACTCAATGTCTGGCAGAGGCAGACTTTTAAGGCTCGTCAGCAGGAGATGCTAGGCATAAGGGAACGTCTAGAGGAGTTGTTAGGGGTACCGTTTACGATGGGTGCTCAACATGAGAAGAAAGATTTGATGGGTCGTCTACAGTCACTTCTGTCACAGGAAGAGTTGTTTTGGCGACAAAGATCAAAGGTTTCTTGGTTAAAGGAGGGGGATAGGAATACTAGCTATTTCCACCGAAAAGCTGCAAATCGAAGGAGGAAGAATTCGATTCCGGGTTTGTATGATGAACAAGGTCAATGGTGTGATGACGATGATGGAATGGAAAAGGTTGTCACTAACTACTTCACAAAAATGTTTACTGCATCAAACATTGATCTGGAAGCTGTAGAAACTACTCTTGCAGCTATACAGCCTTGTGTCACGCATGGTATGAATGAGAAGCTTTGTGCGTCGTATTCTCAAGAGGAAGTGAAGAATGCATTATTCCAGATGTATCCTACTAAATCTCCGGGACCGGATGGCATGCCTCCCATTTTTTTCCAACACTATTGGGAAACTATTGGAGCAGATGTTACAGAGGCAGTTCAGGATTTTCTGCATTCAGGTCAACTACTTCCTCAAATCAACTTTACTCATATTTGCTTGATTCCCAAAGTAAATAATCCGGAACACATGTCGGATTTGAGGCCAATTGCTCTCTGTAATGTGATTTACAAAATTTGTTCAAAGGTAATTGCTAACAGGTTGAAGCAGGTTCTACCCTCTCTGATTTTCCCTTATCAGAGTGCTTTTGTTCCTGGGAGGTTGATCACTGATAACATTCTGGTAGCTAATGAGATTGCCCACTTTGTTCATAATAAGAGAGAGGGAGGGGAAGGTTTTATGGCATTGAAGCTCGATCTCAGTAAAGCATATGATCGAATCGAATGGACTTTTCTAAGAAAGGTTCTGGACCGGTTTGGTTTTAATCATGGTTGGATTGAGATGGTGATGCAGTGCATTAGTTCAGTGAGATACTCTTTTTTGGTGCGTGGAAAACCCCGAGGTTTAGTTATTCCAAGTAGAGGATTGAGACAAGGGGATCCACTATCCCCTTATCTATTTCTACTTGGCGTTGAAGGTTTTTCTGCTTTGCTAAGACAGAAACAGGAGATGGGTTTTCTCCCAGGTATTGAGGTATTTCATGATGCTCCAGCCGTAAATCATCTTTTATTCGCGGATGATAGTATGTTATATGCTCATGCTTCTTTGGAGGACTGTTACCAGATTCAGGATGTTATTGAAACTTATGGGAGAGCTTCTGGACAACTTGTTAATTTTGATAAGAGTTCAGTGGTTTTCAGTAAGAATGTGTCAGACTTTATGCAAGATGAAGTGTCGAGTCTACTAGGTGTTGAGGTGGTTGAATCTCATGAACGTTATCTAGGGCTGCCTACTTATGTGGGGAGGAAGAAAACAGCTACCTTTCAATTTATTAAGGACAATCTAGCTAAGAAGCTTTCTTGTTGGCAAGGGAAGATGTTGAGCGGAGCAGGAAAAGATATATTGATCAGAGTAGTGGTGCAAACTTTACCTACCTATGCAATGAGTGTGTTTCAGTTAACAAAGAACTTTTGTCTGGATCTTGAGCAGATGTGTGCCCGATTTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0016020 GO:0016342 GO:0019897 GO:0019898 GO:0019899 GO:0019902 GO:0019903 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045294 GO:0045296 GO:0050839 GO:0071944 GO:0098796 GO:0098797

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

833

Amino Acids

95.19

Weight (kDa)

7.8

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos	PF03372	4 - 200	1.2e-17	Endonuclease/Exonuclease/phosphatase family
RVT_1	PF00078	499 - 739	3.3e-30	Reverse transcriptase (RNA-dependent DNA polymerase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37290 AT5G37290 AT5G37290
fragaria_vesca	FvH4_5g26310 FvH4_5g27560 FvH4_5g27560
malus_domestica	MD09G1253300.v1.1
prunus_persica	Prupe.3G143200_v2.0.a1 Prupe.3G143200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0218931
rosa_laevigata	RLG00000000573 RLG00000002316 RLG00000014261
rosa_multiflora	Rmu_sc0003823.1_g000009
rosa_roxburghii	Rroxscaffold_3G00240300
rosa_rugosa	Rorug07G0179900 Rorug07G0180000 Rorug07G0180100 Rorug07G0344700
rosa_samantha	Rh7AG323200 Rh7AG499200 Rh7BG314200 Rh7CG339900 Rh7DG320300
rosa_wichuraiana	Rw6G011510 Rw7G027390 Rw7G042180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	229, 1591
Acc65I	GGTACC	1 cut(s)	937
AccB1I	GGYRCC	1 cut(s)	937
AccBSI	CCGCTC	1 cut(s)	2376
AccI	GTMKAC	3 cut(s)	545, 988, 2233
AccII	CGCG	1 cut(s)	2066
AccIII	TCCGGA	1 cut(s)	1513
AciI	CCGC	5 cut(s)	341, 587, 644, 2066, 2376
AclI	AACGTT	1 cut(s)	2266
AclWI	GGATC	6 cut(s)	38, 290, 588, 1925, 1938, 2478
AcsI	RAATTY	5 cut(s)	426, 556, 728, 1111, 1566
AcuI	CTGAAG	1 cut(s)	731
AfaI	GTAC	3 cut(s)	247, 608, 939
AfiI	CCNNNNNNNGG	6 cut(s)	385, 399, 603, 1913, 2119, 2496
AflIII	ACRYGT	1 cut(s)	1521
AgeI	ACCGGT	1 cut(s)	1803
AhdI	GACNNNNNGTC	1 cut(s)	857
AjiI	CACGTC	2 cut(s)	664, 713
AjnI	CCWGG	2 cut(s)	1645, 2014
Alw21I	GWGCWC	3 cut(s)	628, 840, 958
Alw26I	GTCTC	4 cut(s)	101, 366, 557, 1915
AlwI	GGATC	6 cut(s)	38, 290, 588, 1925, 1938, 2478
Ama87I	CYCGRG	2 cut(s)	627, 1890
Aor13HI	TCCGGA	1 cut(s)	1513
AoxI	GGCC	1 cut(s)	1535
ApeKI	GCWGC	4 cut(s)	676, 1091, 1250, 2278
ApoI	RAATTY	5 cut(s)	426, 556, 728, 1111, 1566
AsiGI	ACCGGT	1 cut(s)	1803
Asp718I	GGTACC	1 cut(s)	937
AspA2I	CCTAGG	1 cut(s)	499
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	5 cut(s)	287, 455, 511, 1361, 1801
AsuC2I	CCSGG	3 cut(s)	291, 1122, 1359
AsuHPI	GGTGA	2 cut(s)	767, 1849
AsuII	TTCGAA	1 cut(s)	732
AvaI	CYCGRG	2 cut(s)	627, 1890
AvaII	GGWCC	5 cut(s)	287, 455, 511, 1361, 1801
AvrII	CCTAGG	1 cut(s)	499
BaeGI	GKGCMC	1 cut(s)	2491
BamHI	GGATCC	1 cut(s)	1930
BanI	GGYRCC	1 cut(s)	937
Bbv12I	GWGCWC	3 cut(s)	628, 840, 958
BbvI	GCAGC	4 cut(s)	663, 1078, 1262, 2265
BccI	CCATC	9 cut(s)	297, 446, 758, 943, 973, 1157, 1361, 1828, 1996
BceAI	ACGGC	2 cut(s)	354, 2030
BcgI	CGANNNNNNTGC	2 cut(s)	695, 729
BciT130I	CCWGG	2 cut(s)	1647, 2016
BciVI	GTATCC	2 cut(s)	339, 1353
BclI	TGATCA	2 cut(s)	1656, 2397
BcnI	CCSGG	3 cut(s)	291, 1122, 1359
BcoDI	GTCTC	4 cut(s)	101, 366, 557, 1915
BfmI	CTRYAG	3 cut(s)	677, 989, 1233
BfuAI	ACCTGC	2 cut(s)	229, 1591
BfuI	GTATCC	2 cut(s)	339, 1353
BisI	GCNGC	4 cut(s)	677, 1092, 1251, 2279
BlnI	CCTAGG	1 cut(s)	499
BlsI	GCNGC	4 cut(s)	678, 1093, 1252, 2280
Bme1390I	CCNGG	5 cut(s)	291, 1122, 1359, 1647, 2016
Bme18I	GGWCC	5 cut(s)	287, 455, 511, 1361, 1801
BmeRI	GACNNNNNGTC	1 cut(s)	857
BmeT110I	CYCGRG	2 cut(s)	627, 1890
BmgBI	CACGTC	2 cut(s)	664, 713
BmgT120I	GGNCC	5 cut(s)	287, 455, 511, 1361, 1801
BmiI	GGNNCC	4 cut(s)	512, 939, 1362, 1932
BmrFI	CCNGG	5 cut(s)	291, 1122, 1359, 1647, 2016
BmrI	ACTGGG	1 cut(s)	324
BmsI	GCATC	4 cut(s)	888, 1220, 1830, 2026
BmuI	ACTGGG	1 cut(s)	324
BpmI	CTGGAG	2 cut(s)	293, 2025
Bpu14I	TTCGAA	1 cut(s)	732
BpuEI	CTTGAG	2 cut(s)	1293, 2495
BpuMI	CCSGG	3 cut(s)	291, 1122, 1359
BsaAI	YACGTR	1 cut(s)	549
BsaBI	GATNNNNATC	2 cut(s)	144, 657
BsaI	GGTCTC	1 cut(s)	366
BsaJI	CCNNGG	5 cut(s)	398, 499, 1646, 1891, 2014
BsaWI	WCCGGW	3 cut(s)	1363, 1513, 1803
BsaXI	ACNNNNNCTCC	4 cut(s)	1339, 1369, 1404, 1434
Bsc4I	CCNNNNNNNGG	6 cut(s)	385, 399, 603, 1913, 2119, 2496
Bse118I	RCCGGY	1 cut(s)	1803
Bse1I	ACTGG	2 cut(s)	319, 582
Bse3DI	GCAATG	3 cut(s)	43, 718, 2439
Bse8I	GATNNNNATC	2 cut(s)	144, 657
BseAI	TCCGGA	1 cut(s)	1513
BseBI	CCWGG	2 cut(s)	1647, 2016
BseDI	CCNNGG	5 cut(s)	398, 499, 1646, 1891, 2014
BseGI	GGATG	5 cut(s)	216, 457, 1372, 2074, 2128
BseJI	GATNNNNATC	2 cut(s)	144, 657
BseLI	CCNNNNNNNGG	6 cut(s)	385, 399, 603, 1913, 2119, 2496
BseMI	GCAATG	3 cut(s)	43, 718, 2439
BseMII	CTCAG	5 cut(s)	101, 382, 552, 586, 1765
BseNI	ACTGG	2 cut(s)	319, 582
BseRI	GAGGAG	1 cut(s)	938
BseSI	GKGCMC	1 cut(s)	2491
BseXI	GCAGC	4 cut(s)	663, 1078, 1262, 2265
BseYI	CCCAGC	1 cut(s)	702
BsgI	GTGCAG	3 cut(s)	257, 577, 708
Bsh1236I	CGCG	1 cut(s)	2066
BshFI	GGCC	1 cut(s)	1537
BshNI	GGYRCC	1 cut(s)	937
BshTI	ACCGGT	1 cut(s)	1803
BsiHKAI	GWGCWC	3 cut(s)	628, 840, 958
BsiHKCI	CYCGRG	2 cut(s)	627, 1890
BsiSI	CCGG	6 cut(s)	290, 1121, 1358, 1364, 1514, 1804
BslFI	GGGAC	3 cut(s)	524, 650, 1374
BslI	CCNNNNNNNGG	6 cut(s)	385, 399, 603, 1913, 2119, 2496
BsmAI	GTCTC	4 cut(s)	101, 366, 557, 1915
BsmFI	GGGAC	3 cut(s)	524, 650, 1374
BsmI	GAATGC	2 cut(s)	1330, 1447
BsnI	GGCC	1 cut(s)	1537
Bso31I	GGTCTC	1 cut(s)	366
BsoBI	CYCGRG	2 cut(s)	627, 1890
Bsp119I	TTCGAA	1 cut(s)	732
Bsp1286I	GDGCHC	4 cut(s)	628, 840, 958, 2491
Bsp13I	TCCGGA	1 cut(s)	1513
BspACI	CCGC	5 cut(s)	341, 587, 644, 2066, 2376
BspANI	GGCC	1 cut(s)	1537
BspCNI	CTCAG	5 cut(s)	100, 381, 553, 585, 1764
BspEI	TCCGGA	1 cut(s)	1513
BspFNI	CGCG	1 cut(s)	2066
BspHI	TCATGA	2 cut(s)	2032, 2260
BspLI	GGNNCC	4 cut(s)	512, 939, 1362, 1932
BspMAI	CTGCAG	1 cut(s)	681
BspMI	ACCTGC	2 cut(s)	229, 1591
BspPI	GGATC	6 cut(s)	38, 290, 588, 1925, 1938, 2478
BspT104I	TTCGAA	1 cut(s)	732
BspT107I	GGYRCC	1 cut(s)	937
BspTNI	GGTCTC	1 cut(s)	366
BsrBI	CCGCTC	1 cut(s)	2376
BsrDI	GCAATG	3 cut(s)	43, 718, 2439
BsrFI	RCCGGY	1 cut(s)	1803
BsrI	ACTGG	2 cut(s)	319, 582
BssAI	RCCGGY	1 cut(s)	1803
BssECI	CCNNGG	5 cut(s)	398, 499, 1646, 1891, 2014
BssT1I	CCWWGG	2 cut(s)	398, 499
Bst2UI	CCWGG	2 cut(s)	1647, 2016
Bst4CI	ACNGT	3 cut(s)	942, 993, 2108
Bst6I	CTCTTC	2 cut(s)	770, 1005
BstAPI	GCANNNNNTGC	1 cut(s)	898
BstBAI	YACGTR	1 cut(s)	549
BstBI	TTCGAA	1 cut(s)	732
BstC8I	GCNNGC	3 cut(s)	681, 848, 1373
BstDEI	CTNAG	9 cut(s)	11, 87, 368, 561, 572, 1751, 1787, 1985, 2340
BstF5I	GGATG	5 cut(s)	216, 457, 1372, 2074, 2128
BstFNI	CGCG	1 cut(s)	2066
BstHHI	GCGC	1 cut(s)	154
BstMAI	GTCTC	4 cut(s)	101, 366, 557, 1915
BstMWI	GCNNNNNNNGC	3 cut(s)	129, 478, 898
BstNI	CCWGG	2 cut(s)	1647, 2016
BstNSI	RCATGY	2 cut(s)	1375, 1525
BstSCI	CCNGG	5 cut(s)	289, 1120, 1357, 1645, 2014
BstSFI	CTRYAG	3 cut(s)	677, 989, 1233
BstSLI	GKGCMC	1 cut(s)	2491
BstUI	CGCG	1 cut(s)	2066
BstV1I	GCAGC	4 cut(s)	663, 1078, 1262, 2265
BstX2I	RGATCY	4 cut(s)	30, 295, 1930, 2470
BstYI	RGATCY	4 cut(s)	30, 295, 1930, 2470
BsuI	GTATCC	2 cut(s)	339, 1353
BsuRI	GGCC	1 cut(s)	1537
BtrI	CACGTC	2 cut(s)	664, 713
BtsCI	GGATG	5 cut(s)	216, 457, 1372, 2074, 2128
BtsI	GCAGTG	1 cut(s)	1850
BtsIMutI	CAGTG	4 cut(s)	1659, 1850, 1863, 2187
BveI	ACCTGC	2 cut(s)	229, 1591
Cac8I	GCNNGC	3 cut(s)	681, 848, 1373
CciI	TCATGA	2 cut(s)	2032, 2260
CfoI	GCGC	1 cut(s)	154
Cfr10I	RCCGGY	1 cut(s)	1803
Cfr13I	GGNCC	5 cut(s)	287, 455, 511, 1361, 1801
CseI	GACGC	1 cut(s)	1287
Csp6I	GTAC	3 cut(s)	246, 607, 938
CspAI	ACCGGT	1 cut(s)	1803
CviQI	GTAC	3 cut(s)	246, 607, 938
DdeI	CTNAG	9 cut(s)	11, 87, 368, 561, 572, 1751, 1787, 1985, 2340
DriI	GACNNNNNGTC	1 cut(s)	857
Eam1104I	CTCTTC	2 cut(s)	770, 1005
Eam1105I	GACNNNNNGTC	1 cut(s)	857
EarI	CTCTTC	2 cut(s)	770, 1005
EciI	GGCGGA	1 cut(s)	356
Eco130I	CCWWGG	2 cut(s)	398, 499
Eco31I	GGTCTC	1 cut(s)	366
Eco32I	GATATC	2 cut(s)	7, 613
Eco47I	GGWCC	5 cut(s)	287, 455, 511, 1361, 1801
Eco57I	CTGAAG	1 cut(s)	731
Eco88I	CYCGRG	2 cut(s)	627, 1890
EcoO109I	RGGNCCY	1 cut(s)	511
EcoRI	GAATTC	2 cut(s)	556, 1111
EcoRII	CCWGG	2 cut(s)	1645, 2014
EcoRV	GATATC	2 cut(s)	7, 613
EcoT14I	CCWWGG	2 cut(s)	398, 499
EcoT22I	ATGCAT	1 cut(s)	1330
ErhI	CCWWGG	2 cut(s)	398, 499
FaqI	GGGAC	3 cut(s)	524, 650, 1374
FauNDI	CATATG	1 cut(s)	1762
FbaI	TGATCA	2 cut(s)	1656, 2397
FblI	GTMKAC	3 cut(s)	545, 988, 2233
Fnu4HI	GCNGC	4 cut(s)	677, 1092, 1251, 2279
FokI	GGATG	5 cut(s)	223, 464, 1379, 2081, 2135
Fsp4HI	GCNGC	4 cut(s)	677, 1092, 1251, 2279
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	4 cut(s)	677, 1092, 1251, 2279
GsaI	CCCAGC	1 cut(s)	706
GsuI	CTGGAG	2 cut(s)	293, 2025
HaeIII	GGCC	1 cut(s)	1537
HapII	CCGG	6 cut(s)	290, 1121, 1358, 1364, 1514, 1804
HgaI	GACGC	1 cut(s)	1287
HhaI	GCGC	1 cut(s)	154
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HincII	GTYRAC	2 cut(s)	1457, 2451
HindII	GTYRAC	2 cut(s)	1457, 2451
HindIII	AAGCTT	2 cut(s)	1289, 2345
HpaI	GTTAAC	1 cut(s)	2451
HpaII	CCGG	6 cut(s)	290, 1121, 1358, 1364, 1514, 1804
HphI	GGTGA	2 cut(s)	767, 1849
Hpy166II	GTNNAC	7 cut(s)	546, 945, 989, 1206, 1457, 2234, 2451
Hpy8I	GTNNAC	7 cut(s)	546, 945, 989, 1206, 1457, 2234, 2451
Hpy99I	CGWCG	2 cut(s)	717, 1303
HpyAV	CCTTC	5 cut(s)	55, 524, 1095, 1718, 1961
HpyCH4III	ACNGT	3 cut(s)	942, 993, 2108
HpyCH4IV	ACGT	6 cut(s)	548, 663, 712, 795, 916, 2266
HpyF10VI	GCNNNNNNNGC	3 cut(s)	129, 478, 898
HpyF3I	CTNAG	9 cut(s)	11, 87, 368, 561, 572, 1751, 1787, 1985, 2340
HpySE526I	ACGT	6 cut(s)	548, 663, 712, 795, 916, 2266
HspAI	GCGC	1 cut(s)	152
Kpn2I	TCCGGA	1 cut(s)	1513
KpnI	GGTACC	1 cut(s)	941
Ksp22I	TGATCA	2 cut(s)	1656, 2397
KspAI	GTTAAC	1 cut(s)	2451
LmnI	GCTCC	3 cut(s)	1412, 2044, 2378
Lsp1109I	GCAGC	4 cut(s)	663, 1078, 1262, 2265
LweI	GCATC	4 cut(s)	888, 1220, 1830, 2026
MaeII	ACGT	6 cut(s)	548, 663, 712, 795, 916, 2266
MaeIII	GTNAC	6 cut(s)	993, 1002, 1180, 1267, 1420, 2108
MbiI	CCGCTC	1 cut(s)	2376
MboII	GAAGA	7 cut(s)	787, 979, 1022, 1120, 1333, 2311, 2377
MfeI	CAATTG	1 cut(s)	1539
MflI	RGATCY	4 cut(s)	30, 295, 1930, 2470
MhlI	GDGCHC	4 cut(s)	628, 840, 958, 2491
MlyI	GAGTC	4 cut(s)	564, 639, 846, 2239
MmeI	TCCRAC	5 cut(s)	429, 658, 1414, 1506, 1805
Mph1103I	ATGCAT	1 cut(s)	1330
MroI	TCCGGA	1 cut(s)	1513
MslI	CAYNNNNRTG	1 cut(s)	1199
MspI	CCGG	6 cut(s)	290, 1121, 1358, 1364, 1514, 1804
MspR9I	CCNGG	5 cut(s)	291, 1122, 1359, 1647, 2016
MunI	CAATTG	1 cut(s)	1539
Mva1269I	GAATGC	2 cut(s)	1330, 1447
MvaI	CCWGG	2 cut(s)	1647, 2016
MvnI	CGCG	1 cut(s)	2066
MwoI	GCNNNNNNNGC	3 cut(s)	129, 478, 898
NciI	CCSGG	3 cut(s)	291, 1122, 1359
NdeI	CATATG	1 cut(s)	1762
NlaIV	GGNNCC	4 cut(s)	512, 939, 1362, 1932
NmeAIII	GCCGAG	1 cut(s)	672
NmuCI	GTSAC	4 cut(s)	993, 1002, 1180, 1267
NsiI	ATGCAT	1 cut(s)	1330
NspI	RCATGY	2 cut(s)	1375, 1525
NspV	TTCGAA	1 cut(s)	732
PaeI	GCATGC	1 cut(s)	1375
PaeR7I	CTCGAG	1 cut(s)	627
PagI	TCATGA	2 cut(s)	2032, 2260
PciI	ACATGT	1 cut(s)	1521
PctI	GAATGC	2 cut(s)	1330, 1447
PfeI	GAWTC	8 cut(s)	79, 389, 653, 1117, 1495, 1770, 2116, 2255
PfoI	TCCNGGA	2 cut(s)	289, 1357
PinAI	ACCGGT	1 cut(s)	1803
PkrI	GCNGC	4 cut(s)	678, 1093, 1252, 2280
PleI	GAGTC	4 cut(s)	564, 638, 846, 2238
PpsI	GAGTC	4 cut(s)	564, 638, 846, 2238
Ppu21I	YACGTR	1 cut(s)	549
PpuMI	RGGWCCY	1 cut(s)	511
PscI	ACATGT	1 cut(s)	1521
Psp1406I	AACGTT	1 cut(s)	2266
Psp5II	RGGWCCY	1 cut(s)	511
Psp6I	CCWGG	2 cut(s)	1645, 2014
PspFI	CCCAGC	1 cut(s)	702
PspGI	CCWGG	2 cut(s)	1645, 2014
PspN4I	GGNNCC	4 cut(s)	512, 939, 1362, 1932
PspPI	GGNCC	5 cut(s)	287, 455, 511, 1361, 1801
PspPPI	RGGWCCY	1 cut(s)	511
PspXI	VCTCGAGB	1 cut(s)	627
PstI	CTGCAG	1 cut(s)	681
PsuI	RGATCY	4 cut(s)	30, 295, 1930, 2470
RsaI	GTAC	3 cut(s)	247, 608, 939
RsaNI	GTAC	3 cut(s)	246, 607, 938
RseI	CAYNNNNRTG	1 cut(s)	1199
SatI	GCNGC	4 cut(s)	677, 1092, 1251, 2279
Sau96I	GGNCC	5 cut(s)	287, 455, 511, 1361, 1801
SchI	GAGTC	4 cut(s)	564, 639, 846, 2239
ScrFI	CCNGG	5 cut(s)	291, 1122, 1359, 1647, 2016
SduI	GDGCHC	4 cut(s)	628, 840, 958, 2491
SfaNI	GCATC	4 cut(s)	888, 1220, 1830, 2026
SfcI	CTRYAG	3 cut(s)	677, 989, 1233
Sfr274I	CTCGAG	1 cut(s)	627
SfuI	TTCGAA	1 cut(s)	732
SinI	GGWCC	5 cut(s)	287, 455, 511, 1361, 1801
SlaI	CTCGAG	1 cut(s)	627
SmiMI	CAYNNNNRTG	1 cut(s)	1199
SmlI	CTYRAG	3 cut(s)	627, 1308, 2474
SmoI	CTYRAG	3 cut(s)	627, 1308, 2474
SphI	GCATGC	1 cut(s)	1375
SsiI	CCGC	5 cut(s)	341, 587, 644, 2066, 2376
SspI	AATATT	1 cut(s)	672
StyD4I	CCNGG	5 cut(s)	289, 1120, 1357, 1645, 2014
StyI	CCWWGG	2 cut(s)	398, 499
TaaI	ACNGT	3 cut(s)	942, 993, 2108
TaiI	ACGT	6 cut(s)	551, 666, 715, 798, 919, 2269
TaqI	TCGA	8 cut(s)	628, 732, 1099, 1115, 1746, 1768, 1773, 2228
TfiI	GAWTC	8 cut(s)	79, 389, 653, 1117, 1495, 1770, 2116, 2255
TscAI	CASTG	4 cut(s)	1666, 1850, 1863, 2187
TseFI	GTSAC	4 cut(s)	993, 1002, 1180, 1267
TseI	GCWGC	4 cut(s)	676, 1091, 1250, 2278
Tsp45I	GTSAC	4 cut(s)	993, 1002, 1180, 1267
TspDTI	ATGAA	8 cut(s)	240, 438, 1149, 1295, 1691, 2021, 2235, 2277
TspGWI	ACGGA	2 cut(s)	125, 368
TspRI	CASTG	4 cut(s)	1666, 1850, 1863, 2187
VpaK11BI	GGWCC	5 cut(s)	287, 455, 511, 1361, 1801
XapI	RAATTY	5 cut(s)	426, 556, 728, 1111, 1566
XbaI	TCTAGA	1 cut(s)	919
XceI	RCATGY	2 cut(s)	1375, 1525
XhoI	CTCGAG	1 cut(s)	627
XmaJI	CCTAGG	1 cut(s)	499
XmiI	GTMKAC	3 cut(s)	545, 988, 2233
Zsp2I	ATGCAT	1 cut(s)	1330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.