Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0006127

Physical Location & Seq

Genomic Coordinates Reverse (-)

20212826 .. 20216578

Gene Structure 3753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G011510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGAAGAAACTGCCCACAATGAGAGAGGTCACGAAAGAGTTGGAGGCCATGCACATGTTTGGAGAAAAGACCTCTTATTATTGACTGAGCGTTTGCAGAACTCTGCATTTTCGATAGGATTGCAAGAATTGCAATCCCAGTCTGTTCTCTTGTTTAACAACCTCTTCAACATCGTTATTCCACCATTCTCCTGTGCCATTTTCAAAAGAACAATGCTCAATGTGGTGGAACTTTTTCTGGACTGGATAACAAAACCAAATGAGAAGCTTGTGGAATTTGGGGTAGGTGGGATCTGCAAATGTTGCCCGGTATGGTGGGATCCCCTTATTATTCAATGTTTATCAAGCCCAGTTAGAAACACTGTGAATTATGCAATTGGGTCACTATACTATCTTTGCAACGCATCAAACAAGGAAGAGATTATGAAGCCAGAAGTGGTCGATGTCATGAAGAGATATGCTGCTGCAGCAAGTGTCAGCAGCTTCAGTAATCTAGCCAAGCCATTTTTTGGAGAATATGTTTCTGAAAATGAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0016020 GO:0016342 GO:0019897 GO:0019898 GO:0019899 GO:0019902 GO:0019903 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045294 GO:0045296 GO:0050839 GO:0071944 GO:0098796 GO:0098797

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

179

Amino Acids

20.32

Weight (kDa)

5.82

Isoelectric Point (pI)

49.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37290 AT5G37290 AT5G37290
fragaria_vesca	FvH4_5g26310 FvH4_5g27560 FvH4_5g27560
malus_domestica	MD09G1253300.v1.1
prunus_persica	Prupe.3G143200_v2.0.a1 Prupe.3G143200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0218931
rosa_laevigata	RLG00000000573 RLG00000002316 RLG00000014261
rosa_multiflora	Rmu_sc0003823.1_g000009
rosa_roxburghii	Rroxscaffold_3G00240300
rosa_rugosa	Rorug07G0179900 Rorug07G0180000 Rorug07G0180100 Rorug07G0344700
rosa_samantha	Rh7AG323200 Rh7AG499200 Rh7BG314200 Rh7CG339900 Rh7DG320300
rosa_wichuraiana	Rw6G011510 Rw7G027390 Rw7G042180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	509
AclWI	GGATC	3 cut(s)	299, 314, 327
AcsI	RAATTY	2 cut(s)	275, 533
AcuI	CTGAAG	1 cut(s)	469
AfiI	CCNNNNNNNGG	1 cut(s)	509
AflIII	ACRYGT	1 cut(s)	55
AgsI	TTSAA	3 cut(s)	169, 205, 335
AluBI	AGCT	2 cut(s)	268, 483
AluI	AGCT	2 cut(s)	268, 483
AlwI	GGATC	3 cut(s)	299, 314, 327
AoxI	GGCC	1 cut(s)	46
ApeKI	GCWGC	4 cut(s)	461, 464, 467, 480
ApoI	RAATTY	2 cut(s)	275, 533
ArsI	GACNNNNNNTTYG	2 cut(s)	76, 108
Asp700I	GAANNNNTTC	1 cut(s)	234
AsuC2I	CCSGG	1 cut(s)	308
BamHI	GGATCC	1 cut(s)	319
BbvI	GCAGC	4 cut(s)	448, 451, 479, 492
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BcnI	CCSGG	1 cut(s)	308
BfaI	CTAG	1 cut(s)	494
BfmI	CTRYAG	1 cut(s)	465
BisI	GCNGC	4 cut(s)	462, 465, 468, 481
BlsI	GCNGC	4 cut(s)	463, 466, 469, 482
Bme1390I	CCNGG	1 cut(s)	308
BmiI	GGNNCC	1 cut(s)	321
BmrFI	CCNGG	1 cut(s)	308
BmrI	ACTGGG	2 cut(s)	133, 344
BmsI	GCATC	1 cut(s)	413
BmuI	ACTGGG	2 cut(s)	133, 344
BpuMI	CCSGG	1 cut(s)	308
BsaXI	ACNNNNNCTCC	2 cut(s)	504, 534
Bsc4I	CCNNNNNNNGG	1 cut(s)	509
Bse1I	ACTGG	3 cut(s)	139, 248, 350
BseLI	CCNNNNNNNGG	1 cut(s)	509
BseMII	CTCAG	1 cut(s)	78
BseNI	ACTGG	3 cut(s)	139, 248, 350
BseXI	GCAGC	4 cut(s)	448, 451, 479, 492
BshFI	GGCC	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	308
BslI	CCNNNNNNNGG	1 cut(s)	509
BsnI	GGCC	1 cut(s)	48
Bsp143I	GATC	2 cut(s)	291, 319
BspANI	GGCC	1 cut(s)	48
BspCNI	CTCAG	1 cut(s)	79
BspHI	TCATGA	1 cut(s)	447
BspLI	GGNNCC	1 cut(s)	321
BspMAI	CTGCAG	1 cut(s)	469
BspPI	GGATC	3 cut(s)	299, 314, 327
BsrI	ACTGG	3 cut(s)	139, 248, 350
BssMI	GATC	2 cut(s)	291, 319
Bst4CI	ACNGT	1 cut(s)	364
Bst6I	CTCTTC	3 cut(s)	170, 411, 446
BstAPI	GCANNNNNTGC	2 cut(s)	130, 303
BstDEI	CTNAG	1 cut(s)	87
BstKTI	GATC	2 cut(s)	294, 322
BstMBI	GATC	2 cut(s)	291, 319
BstMWI	GCNNNNNNNGC	3 cut(s)	130, 303, 467
BstNSI	RCATGY	1 cut(s)	59
BstSCI	CCNGG	1 cut(s)	306
BstSFI	CTRYAG	1 cut(s)	465
BstV1I	GCAGC	4 cut(s)	448, 451, 479, 492
BstX2I	RGATCY	2 cut(s)	291, 319
BstYI	RGATCY	2 cut(s)	291, 319
BsuRI	GGCC	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	360
CciI	TCATGA	1 cut(s)	447
CviAII	CATG	3 cut(s)	50, 56, 448
CviJI	RGCY	7 cut(s)	48, 268, 348, 430, 483, 497, 502
CviKI_1	RGCY	7 cut(s)	48, 268, 348, 430, 483, 497, 502
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	2 cut(s)	293, 321
DpnII	GATC	2 cut(s)	291, 319
Eam1104I	CTCTTC	3 cut(s)	170, 411, 446
EarI	CTCTTC	3 cut(s)	170, 411, 446
Eco57I	CTGAAG	1 cut(s)	469
FaeI	CATG	3 cut(s)	53, 59, 451
FaiI	YATR	9 cut(s)	51, 57, 313, 372, 388, 425, 449, 459, 519
FatI	CATG	3 cut(s)	49, 55, 447
Fnu4HI	GCNGC	4 cut(s)	462, 465, 468, 481
Fsp4HI	GCNGC	4 cut(s)	462, 465, 468, 481
FspBI	CTAG	1 cut(s)	494
GluI	GCNGC	4 cut(s)	462, 465, 468, 481
HaeIII	GGCC	1 cut(s)	48
HapII	CCGG	1 cut(s)	308
Hin1II	CATG	3 cut(s)	53, 59, 451
HindIII	AAGCTT	1 cut(s)	266
HpaII	CCGG	1 cut(s)	308
Hpy188I	TCNGA	1 cut(s)	526
Hpy188III	TCNNGA	3 cut(s)	32, 239, 448
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4V	TGCA	9 cut(s)	53, 97, 107, 124, 133, 297, 374, 399, 467
HpyF10VI	GCNNNNNNNGC	3 cut(s)	130, 303, 467
HpyF3I	CTNAG	1 cut(s)	87
Hsp92II	CATG	3 cut(s)	53, 59, 451
Kzo9I	GATC	2 cut(s)	291, 319
LpnPI	CCDG	7 cut(s)	152, 205, 224, 229, 321, 363, 444
Lsp1109I	GCAGC	4 cut(s)	448, 451, 479, 492
LweI	GCATC	1 cut(s)	413
MaeI	CTAG	1 cut(s)	494
MaeIII	GTNAC	2 cut(s)	29, 381
MalI	GATC	2 cut(s)	293, 321
MboI	GATC	2 cut(s)	291, 319
MboII	GAAGA	4 cut(s)	17, 157, 428, 463
MfeI	CAATTG	1 cut(s)	375
MflI	RGATCY	2 cut(s)	291, 319
MluCI	AATT	5 cut(s)	128, 275, 367, 375, 533
MmeI	TCCRAC	1 cut(s)	22
MnlI	CCTC	4 cut(s)	20, 38, 83, 173
MroXI	GAANNNNTTC	1 cut(s)	234
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	1 cut(s)	54
MspI	CCGG	1 cut(s)	308
MspR9I	CCNGG	1 cut(s)	308
MunI	CAATTG	1 cut(s)	375
MwoI	GCNNNNNNNGC	3 cut(s)	130, 303, 467
NciI	CCSGG	1 cut(s)	308
NdeII	GATC	2 cut(s)	291, 319
NlaIII	CATG	3 cut(s)	53, 59, 451
NlaIV	GGNNCC	1 cut(s)	321
NmuCI	GTSAC	2 cut(s)	29, 381
NspI	RCATGY	1 cut(s)	59
PagI	TCATGA	1 cut(s)	447
PciI	ACATGT	1 cut(s)	55
PdmI	GAANNNNTTC	1 cut(s)	234
PflMI	CCANNNNNTGG	1 cut(s)	509
PkrI	GCNGC	4 cut(s)	463, 466, 469, 482
PscI	ACATGT	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	321
PstI	CTGCAG	1 cut(s)	469
PsuI	RGATCY	2 cut(s)	291, 319
RseI	CAYNNNNRTG	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	4 cut(s)	462, 465, 468, 481
Sau3AI	GATC	2 cut(s)	291, 319
ScrFI	CCNGG	1 cut(s)	308
SetI	ASST	6 cut(s)	31, 75, 165, 270, 289, 485
SfaNI	GCATC	1 cut(s)	413
SfcI	CTRYAG	1 cut(s)	465
SmiMI	CAYNNNNRTG	1 cut(s)	54
Sse9I	AATT	5 cut(s)	128, 275, 367, 375, 533
SspMI	CTAG	1 cut(s)	494
StyD4I	CCNGG	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	364
TaqI	TCGA	2 cut(s)	113, 441
TasI	AATT	5 cut(s)	128, 275, 367, 375, 533
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	1 cut(s)	367
TseFI	GTSAC	2 cut(s)	29, 381
TseI	GCWGC	4 cut(s)	461, 464, 467, 480
Tsp45I	GTSAC	2 cut(s)	29, 381
TspDTI	ATGAA	2 cut(s)	440, 464
TspRI	CASTG	1 cut(s)	367
Van91I	CCANNNNNTGG	1 cut(s)	509
XapI	RAATTY	2 cut(s)	275, 533
XceI	RCATGY	1 cut(s)	59
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.